Wall clock time and date at job start Tue Mar 31 2020 07:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.61535 * 2 1 4 4 O 1.43271 * 109.61186 * 120.35178 * 2 1 3 5 5 C 1.43077 * 113.03843 * 54.29714 * 4 2 1 6 6 C 1.50787 * 109.30295 * 48.58249 * 5 4 2 7 7 C 1.38255 * 119.65600 * 163.96306 * 6 5 4 8 8 C 1.38212 * 120.10723 * 179.79180 * 7 6 5 9 9 C 1.50697 * 119.95523 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47041 * 270.02349 * 9 8 7 11 11 C 1.46898 * 110.99769 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46906 * 179.97438 * 11 10 9 13 13 C 1.50708 * 109.47049 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99685 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99437 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00196 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46983 * 89.99772 * 17 15 13 19 19 H 1.48501 * 109.47223 * 210.00273 * 17 15 13 20 20 H 1.48507 * 109.46911 * 330.00173 * 17 15 13 21 21 C 1.38284 * 120.08335 * 0.02562 * 8 7 6 22 22 C 1.38092 * 120.03777 * 0.03779 * 21 8 7 23 23 C 1.38597 * 120.42899 * 344.13054 * 6 5 4 24 24 O 1.35975 * 120.53880 * 359.92585 * 23 6 5 25 25 H 1.08991 * 109.47121 * 299.64963 * 1 2 3 26 26 H 1.09006 * 109.46733 * 59.65378 * 1 2 3 27 27 H 1.09000 * 109.47208 * 179.64675 * 1 2 3 28 28 H 1.09000 * 109.46969 * 180.34852 * 3 2 1 29 29 H 1.08996 * 109.46981 * 300.35031 * 3 2 1 30 30 H 1.09000 * 109.46876 * 60.34995 * 3 2 1 31 31 H 1.08995 * 109.50229 * 288.63499 * 5 4 2 32 32 H 1.08998 * 109.49582 * 168.52443 * 5 4 2 33 33 H 1.08008 * 119.94503 * 359.82008 * 7 6 5 34 34 H 1.08998 * 109.47536 * 30.02653 * 9 8 7 35 35 H 1.08997 * 109.47172 * 150.02787 * 9 8 7 36 36 H 1.00896 * 110.99921 * 56.04728 * 10 9 8 37 37 H 1.08997 * 109.47660 * 300.00010 * 11 10 9 38 38 H 1.09001 * 109.47506 * 60.00079 * 11 10 9 39 39 H 1.08998 * 109.47137 * 299.99923 * 12 11 10 40 40 H 1.08999 * 109.47194 * 60.00509 * 12 11 10 41 41 H 0.97010 * 119.99330 * 179.97438 * 16 15 13 42 42 H 1.08001 * 119.98020 * 180.02562 * 21 8 7 43 43 H 1.08002 * 120.00366 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0436 1.4412 0.0000 4 8 2.0109 -0.6820 1.1646 5 6 1.4750 -2.0015 1.3021 6 6 1.6114 -2.7339 -0.0089 7 6 1.4768 -4.1095 -0.0412 8 6 1.5957 -4.7898 -1.2384 9 6 1.4490 -6.2893 -1.2696 10 7 2.7628 -6.9141 -1.0657 11 6 2.6584 -8.3792 -1.0906 12 6 4.0435 -8.9929 -0.8761 13 6 3.9363 -10.4959 -0.9010 14 1 2.9764 -10.9663 -1.0549 15 6 5.0639 -11.2704 -0.7283 16 7 6.2328 -10.6974 -0.5414 17 14 4.9312 -13.1334 -0.7600 18 1 5.1133 -13.6190 -2.1514 19 1 5.9821 -13.7194 0.1104 20 1 3.5926 -13.5428 -0.2640 21 6 1.8502 -4.0963 -2.4074 22 6 1.9867 -2.7224 -2.3804 23 6 1.8736 -2.0374 -1.1781 24 8 2.0102 -0.6846 -1.1607 25 1 -0.3633 0.5083 0.8930 26 1 -0.3633 0.5192 -0.8869 27 1 -0.3633 -1.0276 -0.0063 28 1 3.1336 1.4384 -0.0063 29 1 1.6765 1.9577 -0.8868 30 1 1.6867 1.9540 0.8931 31 1 0.4220 -1.9398 1.5765 32 1 2.0228 -2.5376 2.0770 33 1 1.2780 -4.6533 0.8705 34 1 0.7699 -6.6045 -0.4775 35 1 1.0473 -6.5950 -2.2356 36 1 3.1850 -6.5960 -0.2064 37 1 1.9876 -8.7093 -0.2975 38 1 2.2652 -8.6991 -2.0556 39 1 4.7140 -8.6628 -1.6695 40 1 4.4371 -8.6731 0.0888 41 1 7.0260 -11.2424 -0.4195 42 1 1.9424 -4.6296 -3.3421 43 1 2.1859 -2.1814 -3.2937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274463131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:19 Heat of formation + Delta-G solvation = -71.944708 kcal Electronic energy + Delta-G solvation = -22624.608581 eV Core-core repulsion = 19248.332863 eV Total energy + Delta-G solvation = -3376.275717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38222 -38.66748 -36.68832 -35.78283 -33.40732 -32.70454 -31.67549 -30.83597 -28.73364 -27.95485 -26.25947 -25.26861 -23.40871 -23.03627 -21.72016 -20.59068 -19.50986 -18.99426 -17.02908 -16.35971 -16.30938 -15.90441 -15.23416 -15.21307 -14.84869 -14.46561 -14.26475 -14.14505 -13.98459 -13.55294 -13.23837 -12.99591 -12.75234 -12.64041 -12.60898 -12.38260 -12.23230 -12.02767 -11.96210 -11.36432 -11.18211 -11.05491 -10.90479 -10.83642 -10.52855 -10.31658 -9.99668 -9.40282 -9.15650 -8.90509 -8.35044 -8.22933 -7.80047 -5.99007 -4.01817 1.18360 1.30209 2.86859 3.16849 3.32579 3.38560 3.41536 3.61896 4.21430 4.30590 4.41553 4.45312 4.60923 4.81646 4.95563 5.01912 5.05320 5.11262 5.15104 5.17995 5.20604 5.27397 5.36829 5.41826 5.54920 5.59855 5.63132 5.68876 5.82957 5.97621 6.11454 6.19433 6.32818 6.37807 6.49304 6.64246 6.71076 6.97341 7.24129 7.46430 7.73099 7.82140 7.94856 8.09041 8.43721 9.05525 9.61897 11.12395 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.002447 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.913769 B =11437.772749 C =11590.020972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.267 3.733 3 C -0.129 4.129 4 O -0.378 6.378 5 C 0.103 3.897 6 C -0.205 4.205 7 C -0.071 4.071 8 C -0.101 4.101 9 C 0.099 3.901 10 N -0.687 5.687 11 C 0.065 3.935 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.059 4.059 22 C -0.147 4.147 23 C 0.131 3.869 24 O -0.324 6.324 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.337 0.663 37 H 0.016 0.984 38 H 0.059 0.941 39 H 0.026 0.974 40 H 0.013 0.987 41 H 0.261 0.739 42 H 0.133 0.867 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 23.979 1.329 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.192 3.808 3 C -0.186 4.186 4 O -0.299 6.299 5 C 0.027 3.973 6 C -0.206 4.206 7 C -0.089 4.089 8 C -0.101 4.101 9 C -0.030 4.030 10 N -0.318 5.318 11 C -0.062 4.062 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.078 4.078 22 C -0.166 4.166 23 C 0.086 3.914 24 O -0.240 6.240 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.155 0.845 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.003 24.188 0.695 27.471 hybrid contribution -0.589 -1.499 0.873 1.832 sum -13.592 22.689 1.567 26.495 Atomic orbital electron populations 1.22840 0.94819 1.04081 1.04247 1.23158 0.91844 0.90821 0.74993 1.21655 1.03372 0.89930 1.03677 1.88302 1.69773 1.27694 1.44093 1.21492 0.99533 0.81739 0.94499 1.20178 1.09844 0.95370 0.95174 1.20642 0.98184 0.92114 0.98010 1.19819 1.01489 0.95901 0.92932 1.20838 0.91956 0.88898 1.01325 1.60643 1.20054 1.08624 1.42430 1.22188 1.00884 0.83987 0.99191 1.19071 0.90229 0.94554 0.97388 1.21175 0.93855 0.91530 1.49520 0.92750 1.25013 0.95401 0.98687 0.95319 1.69981 0.98604 1.35309 1.49309 0.86580 0.77701 0.85663 0.77955 1.20618 1.21221 1.19941 1.20919 0.95750 0.92502 0.98597 1.20535 1.05960 0.94215 0.95866 1.18479 0.97472 0.82058 0.93354 1.86261 1.78500 1.16893 1.42361 0.89989 0.90139 0.91221 0.90509 0.89871 0.89640 0.91240 0.86980 0.85707 0.95031 0.90482 0.84547 0.96619 0.92257 0.95610 0.96815 0.92976 0.84901 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 8.23 37.16 0.31 -1.26 16 2 C 0.27 2.66 1.51 -26.73 -0.04 2.62 16 3 C -0.13 -0.93 9.24 37.16 0.34 -0.59 16 4 O -0.38 -4.34 10.48 -59.11 -0.62 -4.96 16 5 C 0.10 1.06 6.18 36.05 0.22 1.28 16 6 C -0.20 -2.50 5.24 -104.44 -0.55 -3.05 16 7 C -0.07 -0.87 9.37 -39.58 -0.37 -1.24 16 8 C -0.10 -1.35 5.39 -104.62 -0.56 -1.91 16 9 C 0.10 1.43 5.81 -4.98 -0.03 1.40 16 10 N -0.69 -12.40 6.49 -115.06 -0.75 -13.14 16 11 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 12 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 13 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 17 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 C -0.06 -0.76 9.69 -39.62 -0.38 -1.14 16 22 C -0.15 -1.85 9.97 -39.41 -0.39 -2.24 16 23 C 0.13 1.71 6.13 -39.23 -0.24 1.47 16 24 O -0.32 -4.05 9.87 -43.54 -0.43 -4.48 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.60 6.02 -51.93 -0.31 0.29 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.58 6.97 -51.93 -0.36 0.21 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.34 6.01 8.72 -39.29 -0.34 5.66 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -32.33 352.72 -9.94 -42.27 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.89 Total: 1.16 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -2.28 Total: -16.46 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.01 Total: -39.61 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.05 Total: -9.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.33 -9.94 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274463131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.679 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds