Wall clock time and date at job start Tue Mar 31 2020 07:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.61535 * 2 1 4 4 O 1.43271 * 109.61186 * 120.35178 * 2 1 3 5 5 C 1.43077 * 113.03843 * 54.29714 * 4 2 1 6 6 C 1.50787 * 109.30295 * 48.58249 * 5 4 2 7 7 C 1.38255 * 119.65600 * 163.96306 * 6 5 4 8 8 C 1.38212 * 120.10723 * 179.79180 * 7 6 5 9 9 C 1.50697 * 119.95523 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47041 * 270.02349 * 9 8 7 11 11 C 1.46898 * 110.99769 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46906 * 179.97438 * 11 10 9 13 13 C 1.50708 * 109.47049 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99685 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99437 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00196 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46983 * 89.99772 * 17 15 13 19 19 H 1.48501 * 109.47223 * 210.00273 * 17 15 13 20 20 H 1.48507 * 109.46911 * 330.00173 * 17 15 13 21 21 C 1.38284 * 120.08335 * 0.02562 * 8 7 6 22 22 C 1.38092 * 120.03777 * 0.03779 * 21 8 7 23 23 C 1.38597 * 120.42899 * 344.13054 * 6 5 4 24 24 O 1.35975 * 120.53880 * 359.92585 * 23 6 5 25 25 H 1.08991 * 109.47121 * 299.64963 * 1 2 3 26 26 H 1.09006 * 109.46733 * 59.65378 * 1 2 3 27 27 H 1.09000 * 109.47208 * 179.64675 * 1 2 3 28 28 H 1.09000 * 109.46969 * 180.34852 * 3 2 1 29 29 H 1.08996 * 109.46981 * 300.35031 * 3 2 1 30 30 H 1.09000 * 109.46876 * 60.34995 * 3 2 1 31 31 H 1.08995 * 109.50229 * 288.63499 * 5 4 2 32 32 H 1.08998 * 109.49582 * 168.52443 * 5 4 2 33 33 H 1.08008 * 119.94503 * 359.82008 * 7 6 5 34 34 H 1.08998 * 109.47536 * 30.02653 * 9 8 7 35 35 H 1.08997 * 109.47172 * 150.02787 * 9 8 7 36 36 H 1.00896 * 110.99921 * 56.04728 * 10 9 8 37 37 H 1.08997 * 109.47660 * 300.00010 * 11 10 9 38 38 H 1.09001 * 109.47506 * 60.00079 * 11 10 9 39 39 H 1.08998 * 109.47137 * 299.99923 * 12 11 10 40 40 H 1.08999 * 109.47194 * 60.00509 * 12 11 10 41 41 H 0.97010 * 119.99330 * 179.97438 * 16 15 13 42 42 H 1.08001 * 119.98020 * 180.02562 * 21 8 7 43 43 H 1.08002 * 120.00366 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0436 1.4412 0.0000 4 8 2.0109 -0.6820 1.1646 5 6 1.4750 -2.0015 1.3021 6 6 1.6114 -2.7339 -0.0089 7 6 1.4768 -4.1095 -0.0412 8 6 1.5957 -4.7898 -1.2384 9 6 1.4490 -6.2893 -1.2696 10 7 2.7628 -6.9141 -1.0657 11 6 2.6584 -8.3792 -1.0906 12 6 4.0435 -8.9929 -0.8761 13 6 3.9363 -10.4959 -0.9010 14 1 2.9764 -10.9663 -1.0549 15 6 5.0639 -11.2704 -0.7283 16 7 6.2328 -10.6974 -0.5414 17 14 4.9312 -13.1334 -0.7600 18 1 5.1133 -13.6190 -2.1514 19 1 5.9821 -13.7194 0.1104 20 1 3.5926 -13.5428 -0.2640 21 6 1.8502 -4.0963 -2.4074 22 6 1.9867 -2.7224 -2.3804 23 6 1.8736 -2.0374 -1.1781 24 8 2.0102 -0.6846 -1.1607 25 1 -0.3633 0.5083 0.8930 26 1 -0.3633 0.5192 -0.8869 27 1 -0.3633 -1.0276 -0.0063 28 1 3.1336 1.4384 -0.0063 29 1 1.6765 1.9577 -0.8868 30 1 1.6867 1.9540 0.8931 31 1 0.4220 -1.9398 1.5765 32 1 2.0228 -2.5376 2.0770 33 1 1.2780 -4.6533 0.8705 34 1 0.7699 -6.6045 -0.4775 35 1 1.0473 -6.5950 -2.2356 36 1 3.1850 -6.5960 -0.2064 37 1 1.9876 -8.7093 -0.2975 38 1 2.2652 -8.6991 -2.0556 39 1 4.7140 -8.6628 -1.6695 40 1 4.4371 -8.6731 0.0888 41 1 7.0260 -11.2424 -0.4195 42 1 1.9424 -4.6296 -3.3421 43 1 2.1859 -2.1814 -3.2937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274463131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:18 Heat of formation + Delta-G solvation = -92.049848 kcal Electronic energy + Delta-G solvation = -22625.480405 eV Core-core repulsion = 19248.332863 eV Total energy + Delta-G solvation = -3377.147542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.22757 -39.62443 -37.62752 -37.18030 -35.12883 -33.87134 -32.56592 -32.21339 -30.23578 -28.65046 -27.07574 -26.82703 -24.98797 -23.92019 -22.70621 -22.44907 -20.42532 -19.83359 -18.50548 -17.92627 -17.22507 -16.80099 -16.56510 -16.40131 -16.10993 -15.70659 -15.47213 -15.26618 -15.14981 -14.60902 -14.33913 -14.18656 -13.77930 -13.71353 -13.53639 -13.32007 -13.14127 -13.12983 -12.92834 -12.82050 -12.78739 -12.46723 -12.31507 -12.13116 -11.91918 -11.66683 -11.39689 -11.24620 -11.12587 -10.56617 -9.83514 -9.36485 -9.10443 -8.20151 -6.31952 0.23226 0.32065 1.40735 1.42584 1.53473 2.05721 2.39898 2.42993 2.66026 3.13299 3.44685 3.55708 3.59520 3.70350 3.77451 3.87557 4.19032 4.25253 4.31223 4.40109 4.45388 4.52082 4.54274 4.59891 4.63036 4.66454 4.69608 4.72649 4.86044 4.97226 5.02450 5.07327 5.08427 5.19220 5.28992 5.44604 5.62766 5.65865 5.67147 5.77840 5.82750 6.13042 6.26689 6.36069 6.50713 6.85818 7.37491 8.92070 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.002447 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.913769 B =11437.772749 C =11590.020972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.252 3.748 3 C -0.128 4.128 4 O -0.395 6.395 5 C 0.100 3.900 6 C -0.209 4.209 7 C -0.072 4.072 8 C -0.114 4.114 9 C 0.104 3.896 10 N -0.695 5.695 11 C 0.084 3.916 12 C 0.031 3.969 13 C -0.544 4.544 14 H 0.063 0.937 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.261 1.261 21 C -0.066 4.066 22 C -0.156 4.156 23 C 0.118 3.882 24 O -0.338 6.338 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.337 0.663 37 H 0.023 0.977 38 H 0.061 0.939 39 H -0.008 1.008 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.140 0.860 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 24.179 1.735 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.177 3.823 3 C -0.185 4.185 4 O -0.315 6.315 5 C 0.024 3.976 6 C -0.211 4.211 7 C -0.091 4.091 8 C -0.115 4.115 9 C -0.024 4.024 10 N -0.326 5.326 11 C -0.044 4.044 12 C -0.007 4.007 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.186 1.186 21 C -0.085 4.085 22 C -0.174 4.174 23 C 0.073 3.927 24 O -0.255 6.255 25 H 0.120 0.880 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.011 0.989 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.158 0.842 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.683 24.409 1.097 28.506 hybrid contribution -0.060 -1.433 0.753 1.620 sum -14.743 22.976 1.850 27.362 Atomic orbital electron populations 1.22812 0.93034 1.03831 1.05699 1.23709 0.93333 0.91382 0.73849 1.21752 1.02697 0.88636 1.05419 1.88281 1.70453 1.28118 1.44659 1.21656 1.00987 0.81315 0.93616 1.20440 1.09199 0.95493 0.95926 1.20827 0.97633 0.92327 0.98269 1.19774 1.02836 0.95202 0.93650 1.20830 0.90115 0.89423 1.02017 1.60546 1.22613 1.06829 1.42590 1.21798 0.97415 0.85785 0.99440 1.18930 0.92633 0.94340 0.94777 1.21628 0.94373 0.92804 1.49408 0.91916 1.26015 0.94920 1.04361 0.94668 1.70124 0.99506 1.37483 1.50211 0.85396 0.78238 0.78802 0.78281 1.19762 1.20781 1.18556 1.21058 0.95756 0.92791 0.98889 1.20719 1.05969 0.94274 0.96472 1.18728 0.97506 0.82638 0.93844 1.86248 1.78833 1.16631 1.43783 0.88048 0.89172 0.92261 0.91651 0.88337 0.87676 0.89084 0.86119 0.84121 0.93716 0.89963 0.84544 0.95903 0.92023 0.98930 0.99182 0.92765 0.84229 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 8.23 71.98 0.59 -2.05 16 2 C 0.25 4.68 1.51 30.59 0.05 4.73 16 3 C -0.13 -1.64 9.24 71.98 0.67 -0.98 16 4 O -0.39 -8.57 10.48 -126.15 -1.32 -9.90 16 5 C 0.10 1.90 6.18 71.26 0.44 2.34 16 6 C -0.21 -4.93 5.24 -19.75 -0.10 -5.04 16 7 C -0.07 -1.69 9.37 22.27 0.21 -1.48 16 8 C -0.11 -2.95 5.39 -19.86 -0.11 -3.06 16 9 C 0.10 2.90 5.81 85.56 0.50 3.40 16 10 N -0.69 -24.90 6.49 -517.94 -3.36 -28.26 16 11 C 0.08 3.53 5.62 86.30 0.49 4.02 16 12 C 0.03 1.66 5.23 29.85 0.16 1.82 16 13 C -0.54 -31.27 9.11 25.60 0.23 -31.03 16 14 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 16 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 17 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 C -0.07 -1.68 9.69 22.25 0.22 -1.46 16 22 C -0.16 -3.86 9.97 22.38 0.22 -3.63 16 23 C 0.12 3.02 6.13 22.50 0.14 3.16 16 24 O -0.34 -8.26 9.87 -70.44 -0.70 -8.96 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.06 0.93 6.02 -2.39 -0.01 0.91 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.32 6.97 -2.39 -0.02 1.30 16 32 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 36 H 0.34 12.03 8.72 -89.70 -0.78 11.25 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 41 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -69.70 352.72 1.30 -68.40 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.21 Total: 18.62 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.15 Total: -28.92 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -3.08 Total: -85.77 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -2.02 Total: -18.85 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.70 1.30 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274463131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.651 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds