Wall clock time and date at job start Tue Mar 31 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38281 * 119.93443 * 2 1 4 4 C 1.38112 * 120.07235 * 180.28090 * 3 2 1 5 5 C 1.38879 * 119.92627 * 359.46202 * 4 3 2 6 6 N 1.39922 * 120.06767 * 180.30019 * 5 4 3 7 7 C 1.46504 * 119.99850 * 238.14644 * 6 5 4 8 8 C 1.50701 * 109.46974 * 90.00577 * 7 6 5 9 9 H 1.08006 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00194 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00086 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47160 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47141 * 120.00031 * 12 10 8 15 15 H 1.48503 * 109.46836 * 239.99744 * 12 10 8 16 16 C 1.34775 * 119.99807 * 58.15304 * 6 5 4 17 17 O 1.21286 * 120.00079 * 5.22864 * 16 6 5 18 18 C 1.50701 * 119.99834 * 185.23483 * 16 6 5 19 19 C 1.52999 * 109.47201 * 185.82126 * 18 16 6 20 20 C 1.53001 * 109.47175 * 63.48676 * 19 18 16 21 21 C 1.53002 * 109.47049 * 183.48921 * 19 18 16 22 22 O 1.42898 * 109.46886 * 303.48404 * 19 18 16 23 23 C 1.38877 * 119.85991 * 0.28513 * 5 4 3 24 24 C 1.38116 * 119.92880 * 359.97438 * 23 5 4 25 25 H 1.09002 * 109.47690 * 270.23725 * 1 2 3 26 26 H 1.09002 * 109.47111 * 30.23002 * 1 2 3 27 27 H 1.08999 * 109.47653 * 150.23108 * 1 2 3 28 28 H 1.07997 * 119.96333 * 0.04283 * 3 2 1 29 29 H 1.07996 * 120.03684 * 179.73857 * 4 3 2 30 30 H 1.08998 * 109.46857 * 210.00026 * 7 6 5 31 31 H 1.08995 * 109.46969 * 330.00165 * 7 6 5 32 32 H 0.97001 * 120.00334 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.47424 * 305.82051 * 18 16 6 34 34 H 1.09001 * 109.47644 * 65.81771 * 18 16 6 35 35 H 1.08995 * 109.46860 * 60.00313 * 20 19 18 36 36 H 1.08999 * 109.46886 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46974 * 300.00003 * 20 19 18 38 38 H 1.08990 * 109.47251 * 64.91625 * 21 19 18 39 39 H 1.09001 * 109.46918 * 184.91803 * 21 19 18 40 40 H 1.09002 * 109.47008 * 304.91438 * 21 19 18 41 41 H 0.96706 * 114.00085 * 180.02562 * 22 19 18 42 42 H 1.07992 * 120.03450 * 180.02562 * 23 5 4 43 43 H 1.07994 * 119.96577 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 -0.0059 5 6 4.2739 -0.0002 -0.0005 6 7 5.6731 -0.0003 0.0000 7 6 6.4059 -0.6746 -1.0746 8 6 6.6575 0.2979 -2.1980 9 1 6.3063 1.3163 -2.1196 10 6 7.3352 -0.1126 -3.3264 11 7 7.7624 -1.3527 -3.4221 12 14 7.6477 1.0930 -4.7186 13 1 7.0706 2.4154 -4.3671 14 1 9.1104 1.2321 -4.9340 15 1 7.0100 0.5897 -5.9617 16 6 6.3466 0.6198 0.9890 17 8 5.7437 1.0957 1.9277 18 6 7.8490 0.7221 0.9285 19 6 8.3711 1.3360 2.2290 20 6 8.0431 0.4067 3.3994 21 6 9.8870 1.5202 2.1334 22 8 7.7495 2.6053 2.4398 23 6 3.5779 -1.2020 0.0048 24 6 2.1968 -1.1985 0.0052 25 1 -0.3634 0.0043 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3634 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1379 -0.0101 30 1 7.3581 -1.0406 -0.6908 31 1 5.8169 -1.5134 -1.4452 32 1 8.2394 -1.6415 -4.2158 33 1 8.2760 -0.2723 0.7991 34 1 8.1367 1.3532 0.0877 35 1 8.5173 -0.5614 3.2385 36 1 8.4147 0.8443 4.3259 37 1 6.9631 0.2755 3.4675 38 1 10.1161 2.2494 1.3565 39 1 10.2709 1.8754 3.0898 40 1 10.3540 0.5668 1.8860 41 1 8.0343 3.0534 3.2481 42 1 4.1161 -2.1383 0.0095 43 1 1.6550 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279519340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:16 Heat of formation + Delta-G solvation = -71.147821 kcal Electronic energy + Delta-G solvation = -23969.060005 eV Core-core repulsion = 20592.818843 eV Total energy + Delta-G solvation = -3376.241162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97398 -38.54023 -37.09139 -35.03271 -32.87598 -32.34808 -31.33446 -30.47172 -28.15730 -27.40537 -27.07988 -25.51220 -23.21988 -21.97347 -21.56709 -20.09877 -18.59127 -16.78897 -16.64415 -16.36065 -15.69935 -15.10614 -14.92244 -14.67762 -14.43597 -14.25858 -13.58495 -13.48452 -13.33507 -12.99891 -12.97078 -12.51369 -12.30337 -12.11075 -11.95690 -11.70131 -11.64082 -11.47904 -11.39220 -11.24394 -11.08549 -10.95186 -10.77589 -10.61369 -10.42747 -10.19171 -9.80980 -9.67991 -8.94949 -8.57878 -8.52162 -8.42598 -7.36483 -6.20349 -4.27451 1.80202 1.91643 3.21128 3.29701 3.34093 3.43915 3.85373 4.25050 4.34822 4.55362 5.02701 5.11612 5.15039 5.22194 5.24061 5.27499 5.46263 5.60737 5.67877 5.72699 5.76194 5.81707 5.89716 5.95559 5.96183 6.03949 6.14877 6.20392 6.23312 6.26660 6.42051 6.51504 6.64602 6.70814 6.88900 7.00599 7.01766 7.16529 7.31943 7.70462 7.79760 8.01660 8.05395 8.27113 8.77875 9.05788 9.40333 10.86233 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009089 B = 0.007371 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.905075 B = 3797.873453 C = 6065.998654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.112 4.112 3 C -0.110 4.110 4 C -0.107 4.107 5 C 0.178 3.822 6 N -0.564 5.564 7 C 0.238 3.762 8 C -0.535 4.535 9 H 0.062 0.938 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.896 3.104 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.524 3.476 17 O -0.536 6.536 18 C -0.120 4.120 19 C 0.141 3.859 20 C -0.182 4.182 21 C -0.178 4.178 22 O -0.541 6.541 23 C -0.128 4.128 24 C -0.110 4.110 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.364 0.636 42 H 0.121 0.879 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 1.619 9.121 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.113 4.113 3 C -0.129 4.129 4 C -0.127 4.127 5 C 0.086 3.914 6 N -0.291 5.291 7 C 0.119 3.881 8 C -0.573 4.573 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.313 3.687 17 O -0.414 6.414 18 C -0.160 4.160 19 C 0.100 3.900 20 C -0.240 4.240 21 C -0.235 4.235 22 O -0.345 6.345 23 C -0.148 4.148 24 C -0.129 4.129 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.209 0.791 42 H 0.139 0.861 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.738 1.570 8.916 9.795 hybrid contribution 0.756 0.588 -0.615 1.138 sum -2.982 2.157 8.302 9.081 Atomic orbital electron populations 1.20691 0.91758 1.02196 1.01638 1.19750 0.95572 0.93246 1.02691 1.20776 0.93572 0.97200 1.01334 1.21128 0.93953 0.97610 0.99978 1.17613 0.83702 0.92915 0.97204 1.46047 1.03242 1.54026 1.25832 1.19565 0.91797 0.92995 0.83717 1.21494 1.36711 0.97640 1.01496 0.91963 1.24916 0.95210 0.95331 0.98243 1.69923 1.38025 1.15974 1.29108 0.86462 0.78008 0.81344 0.81865 1.19580 1.20758 1.20808 1.20424 0.89954 0.76952 0.81335 1.90620 1.70355 1.46965 1.33452 1.21693 0.92966 1.03132 0.98188 1.20898 0.90509 0.84319 0.94236 1.22597 1.04445 0.99463 0.97447 1.22508 0.96064 1.02897 1.02070 1.86737 1.69235 1.32277 1.46223 1.21099 0.94141 0.97380 1.02165 1.20736 0.93463 0.97186 1.01518 0.91828 0.92013 0.91993 0.86522 0.86343 0.94082 0.94311 0.92541 0.87999 0.87307 0.92421 0.93098 0.89994 0.91644 0.92589 0.91500 0.79066 0.86078 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.11 -1.75 5.88 -104.59 -0.62 -2.36 16 3 C -0.11 -1.87 9.69 -39.61 -0.38 -2.25 16 4 C -0.11 -2.15 9.02 -39.39 -0.36 -2.51 16 5 C 0.18 3.77 5.11 -83.69 -0.43 3.34 16 6 N -0.56 -12.46 2.55 -114.73 -0.29 -12.76 16 7 C 0.24 5.70 4.85 -5.19 -0.03 5.68 16 8 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 9 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -24.42 13.29 55.43 0.74 -23.69 16 12 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.52 11.16 6.95 -10.99 -0.08 11.08 16 17 O -0.54 -12.17 12.63 -15.32 -0.19 -12.36 16 18 C -0.12 -2.22 3.82 -27.88 -0.11 -2.32 16 19 C 0.14 2.18 0.98 -90.62 -0.09 2.09 16 20 C -0.18 -2.62 8.54 37.16 0.32 -2.30 16 21 C -0.18 -2.22 8.82 37.16 0.33 -1.89 16 22 O -0.54 -8.98 11.50 -56.10 -0.64 -9.62 16 23 C -0.13 -2.42 9.34 -39.39 -0.37 -2.79 16 24 C -0.11 -1.79 9.69 -39.61 -0.38 -2.17 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 30 H 0.04 0.98 6.33 -51.93 -0.33 0.65 16 31 H 0.04 0.98 7.44 -51.93 -0.39 0.60 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 33 H 0.10 1.77 6.93 -51.93 -0.36 1.41 16 34 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.42 6.03 -51.93 -0.31 1.11 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.36 4.38 9.05 45.56 0.41 4.79 16 42 H 0.12 2.18 7.90 -52.49 -0.41 1.77 16 43 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -30.59 355.51 -8.31 -38.89 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.00 Total: 8.47 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.25 Total: -10.00 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.44 Total: -36.45 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.84 Total: -21.99 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.59 -8.31 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279519340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.253 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds