Wall clock time and date at job start Tue Mar 31 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38281 * 119.93443 * 2 1 4 4 C 1.38112 * 120.07235 * 180.28090 * 3 2 1 5 5 C 1.38879 * 119.92627 * 359.46202 * 4 3 2 6 6 N 1.39922 * 120.06767 * 180.30019 * 5 4 3 7 7 C 1.46504 * 119.99850 * 238.14644 * 6 5 4 8 8 C 1.50701 * 109.46974 * 90.00577 * 7 6 5 9 9 H 1.08006 * 119.99925 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00194 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99761 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00086 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47160 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47141 * 120.00031 * 12 10 8 15 15 H 1.48503 * 109.46836 * 239.99744 * 12 10 8 16 16 C 1.34775 * 119.99807 * 58.15304 * 6 5 4 17 17 O 1.21286 * 120.00079 * 5.22864 * 16 6 5 18 18 C 1.50701 * 119.99834 * 185.23483 * 16 6 5 19 19 C 1.52999 * 109.47201 * 185.82126 * 18 16 6 20 20 C 1.53001 * 109.47175 * 63.48676 * 19 18 16 21 21 C 1.53002 * 109.47049 * 183.48921 * 19 18 16 22 22 O 1.42898 * 109.46886 * 303.48404 * 19 18 16 23 23 C 1.38877 * 119.85991 * 0.28513 * 5 4 3 24 24 C 1.38116 * 119.92880 * 359.97438 * 23 5 4 25 25 H 1.09002 * 109.47690 * 270.23725 * 1 2 3 26 26 H 1.09002 * 109.47111 * 30.23002 * 1 2 3 27 27 H 1.08999 * 109.47653 * 150.23108 * 1 2 3 28 28 H 1.07997 * 119.96333 * 0.04283 * 3 2 1 29 29 H 1.07996 * 120.03684 * 179.73857 * 4 3 2 30 30 H 1.08998 * 109.46857 * 210.00026 * 7 6 5 31 31 H 1.08995 * 109.46969 * 330.00165 * 7 6 5 32 32 H 0.97001 * 120.00334 * 180.02562 * 11 10 8 33 33 H 1.08999 * 109.47424 * 305.82051 * 18 16 6 34 34 H 1.09001 * 109.47644 * 65.81771 * 18 16 6 35 35 H 1.08995 * 109.46860 * 60.00313 * 20 19 18 36 36 H 1.08999 * 109.46886 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46974 * 300.00003 * 20 19 18 38 38 H 1.08990 * 109.47251 * 64.91625 * 21 19 18 39 39 H 1.09001 * 109.46918 * 184.91803 * 21 19 18 40 40 H 1.09002 * 109.47008 * 304.91438 * 21 19 18 41 41 H 0.96706 * 114.00085 * 180.02562 * 22 19 18 42 42 H 1.07992 * 120.03450 * 180.02562 * 23 5 4 43 43 H 1.07994 * 119.96577 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 -0.0059 5 6 4.2739 -0.0002 -0.0005 6 7 5.6731 -0.0003 0.0000 7 6 6.4059 -0.6746 -1.0746 8 6 6.6575 0.2979 -2.1980 9 1 6.3063 1.3163 -2.1196 10 6 7.3352 -0.1126 -3.3264 11 7 7.7624 -1.3527 -3.4221 12 14 7.6477 1.0930 -4.7186 13 1 7.0706 2.4154 -4.3671 14 1 9.1104 1.2321 -4.9340 15 1 7.0100 0.5897 -5.9617 16 6 6.3466 0.6198 0.9890 17 8 5.7437 1.0957 1.9277 18 6 7.8490 0.7221 0.9285 19 6 8.3711 1.3360 2.2290 20 6 8.0431 0.4067 3.3994 21 6 9.8870 1.5202 2.1334 22 8 7.7495 2.6053 2.4398 23 6 3.5779 -1.2020 0.0048 24 6 2.1968 -1.1985 0.0052 25 1 -0.3634 0.0043 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3634 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1379 -0.0101 30 1 7.3581 -1.0406 -0.6908 31 1 5.8169 -1.5134 -1.4452 32 1 8.2394 -1.6415 -4.2158 33 1 8.2760 -0.2723 0.7991 34 1 8.1367 1.3532 0.0877 35 1 8.5173 -0.5614 3.2385 36 1 8.4147 0.8443 4.3259 37 1 6.9631 0.2755 3.4675 38 1 10.1161 2.2494 1.3565 39 1 10.2709 1.8754 3.0898 40 1 10.3540 0.5668 1.8860 41 1 8.0343 3.0534 3.2481 42 1 4.1161 -2.1383 0.0095 43 1 1.6550 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279519340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:16 Heat of formation + Delta-G solvation = -88.447052 kcal Electronic energy + Delta-G solvation = -23969.810156 eV Core-core repulsion = 20592.818843 eV Total energy + Delta-G solvation = -3376.991313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54620 -39.90843 -38.45074 -36.75074 -34.74697 -33.72299 -32.70898 -31.87729 -29.48787 -29.29936 -28.16383 -26.83463 -25.09190 -23.47612 -22.92989 -21.40145 -20.13058 -18.71833 -18.27146 -17.88366 -17.24224 -16.56877 -16.41584 -16.25115 -15.90422 -15.73855 -14.96009 -14.74052 -14.48817 -14.42333 -14.36372 -14.11775 -13.91677 -13.49277 -13.29148 -13.01563 -12.97219 -12.85711 -12.79660 -12.64311 -12.59470 -12.46530 -12.37556 -12.11561 -11.98738 -11.73157 -11.68328 -10.96313 -10.68352 -10.48509 -10.11150 -9.84758 -8.95510 -8.23745 -6.39242 0.38069 0.49431 1.36341 1.39309 1.50251 1.77210 2.22816 2.39810 2.84630 3.05087 3.35917 3.75060 3.83154 3.95786 4.06461 4.08806 4.10348 4.30221 4.49604 4.51847 4.54648 4.59104 4.70492 4.79072 4.84558 4.88986 4.91383 4.93415 4.95569 5.06224 5.15813 5.19513 5.21340 5.21840 5.42240 5.46276 5.54997 5.67039 5.69094 5.84935 6.00032 6.20605 6.50389 6.74113 7.03719 7.28396 7.40790 8.80962 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.009089 B = 0.007371 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.905075 B = 3797.873453 C = 6065.998654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.131 4.131 5 C 0.136 3.864 6 N -0.568 5.568 7 C 0.255 3.745 8 C -0.545 4.545 9 H 0.044 0.956 10 C 0.026 3.974 11 N -0.916 5.916 12 Si 0.954 3.046 13 H -0.276 1.276 14 H -0.270 1.270 15 H -0.277 1.277 16 C 0.516 3.484 17 O -0.554 6.554 18 C -0.119 4.119 19 C 0.141 3.859 20 C -0.175 4.175 21 C -0.169 4.169 22 O -0.567 6.567 23 C -0.143 4.143 24 C -0.107 4.107 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.095 0.905 30 H 0.038 0.962 31 H 0.021 0.979 32 H 0.270 0.730 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.383 0.617 42 H 0.120 0.880 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 1.665 9.425 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C -0.130 4.130 4 C -0.151 4.151 5 C 0.044 3.956 6 N -0.295 5.295 7 C 0.135 3.865 8 C -0.584 4.584 9 H 0.063 0.937 10 C -0.175 4.175 11 N -0.555 5.555 12 Si 0.780 3.220 13 H -0.201 1.201 14 H -0.195 1.195 15 H -0.202 1.202 16 C 0.307 3.693 17 O -0.432 6.432 18 C -0.159 4.159 19 C 0.101 3.899 20 C -0.232 4.232 21 C -0.227 4.227 22 O -0.375 6.375 23 C -0.163 4.163 24 C -0.125 4.125 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.161 0.839 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.231 0.769 42 H 0.138 0.862 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.610 1.619 9.237 10.450 hybrid contribution 0.900 0.568 -0.674 1.260 sum -3.710 2.188 8.563 9.586 Atomic orbital electron populations 1.20778 0.88159 1.03831 1.03214 1.20278 0.98051 0.92187 0.99885 1.21116 0.92294 0.99277 1.00335 1.21133 0.95566 0.96391 1.02013 1.17993 0.83411 0.94274 0.99891 1.46013 1.04008 1.54053 1.25428 1.19194 0.91419 0.92057 0.83792 1.21583 1.36954 0.97165 1.02668 0.93738 1.25583 0.94858 0.96825 1.00185 1.69993 1.38424 1.17192 1.29928 0.85561 0.78357 0.79017 0.79115 1.20091 1.19539 1.20215 1.20939 0.91089 0.76442 0.80849 1.90587 1.71040 1.47661 1.33941 1.21754 0.91079 1.03420 0.99644 1.20940 0.92148 0.84051 0.92799 1.22504 1.02333 1.00112 0.98294 1.22424 0.93485 1.03299 1.03468 1.86681 1.70112 1.32909 1.47749 1.21275 0.95648 0.96534 1.02860 1.21171 0.92376 0.99161 0.99794 0.90080 0.90652 0.90203 0.83892 0.88630 0.94384 0.96128 0.92101 0.87407 0.89230 0.91269 0.90286 0.93348 0.92371 0.89744 0.90704 0.76857 0.86179 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 10.01 71.23 0.71 -1.26 16 2 C -0.10 -3.00 5.88 -19.84 -0.12 -3.11 16 3 C -0.11 -3.72 9.69 22.25 0.22 -3.50 16 4 C -0.13 -5.50 9.02 22.39 0.20 -5.30 16 5 C 0.14 6.02 5.11 38.16 0.20 6.21 16 6 N -0.57 -26.53 2.55 -635.30 -1.62 -28.16 16 7 C 0.26 12.84 4.85 85.63 0.42 13.25 16 8 C -0.55 -29.73 9.39 25.60 0.24 -29.49 16 9 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 10 C 0.03 1.41 5.46 84.66 0.46 1.87 16 11 N -0.92 -50.73 13.29 21.45 0.28 -50.45 16 12 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 C 0.52 23.18 6.95 87.66 0.61 23.79 16 17 O -0.55 -26.34 12.63 16.91 0.21 -26.12 16 18 C -0.12 -4.58 3.82 29.85 0.11 -4.47 16 19 C 0.14 4.34 0.98 -10.79 -0.01 4.33 16 20 C -0.18 -4.91 8.54 71.98 0.61 -4.30 16 21 C -0.17 -3.97 8.82 71.98 0.63 -3.33 16 22 O -0.57 -18.95 11.50 -129.02 -1.48 -20.43 16 23 C -0.14 -5.53 9.34 22.39 0.21 -5.32 16 24 C -0.11 -3.29 9.69 22.25 0.22 -3.08 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 27 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 28 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 29 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.04 1.91 6.33 -2.39 -0.02 1.90 16 31 H 0.02 1.10 7.44 -2.39 -0.02 1.08 16 32 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.11 3.90 6.93 -2.39 -0.02 3.89 16 34 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 1.70 6.03 -2.39 -0.01 1.68 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.38 8.91 9.05 -74.05 -0.67 8.24 16 42 H 0.12 4.49 7.90 -2.91 -0.02 4.47 16 43 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -68.29 355.51 4.46 -63.83 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.33 Total: 30.13 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 4.71 Total: -13.70 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.34 Total: -78.60 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.27 Total: -46.55 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.29 4.46 -63.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279519340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.620 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds