Wall clock time and date at job start Tue Mar 31 2020 07:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 110.27548 * 2 1 4 4 C 1.53992 * 110.30777 * 122.09067 * 2 1 3 5 5 N 1.47901 * 107.05690 * 120.14489 * 4 2 1 6 6 C 1.46906 * 110.99911 * 214.15455 * 5 4 2 7 7 C 1.50701 * 109.47181 * 169.99674 * 6 5 4 8 8 C 1.38305 * 119.92884 * 270.27442 * 7 6 5 9 9 C 1.38104 * 120.06272 * 180.23165 * 8 7 6 10 10 C 1.38874 * 119.93261 * 359.47791 * 9 8 7 11 11 O 1.35748 * 120.06919 * 180.25382 * 10 9 8 12 12 C 1.34830 * 117.00158 * 354.45958 * 11 10 9 13 13 H 1.08005 * 119.99657 * 5.05386 * 12 11 10 14 14 C 1.38652 * 120.00222 * 185.06116 * 12 11 10 15 15 N 1.31559 * 120.00021 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00107 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47288 * 89.99329 * 16 14 12 18 18 H 1.48495 * 109.47418 * 209.99891 * 16 14 12 19 19 H 1.48508 * 109.46909 * 329.99556 * 16 14 12 20 20 C 1.38882 * 119.86307 * 0.26829 * 10 9 8 21 21 C 1.38102 * 119.92770 * 0.02562 * 20 10 9 22 22 C 1.48534 * 105.81953 * 334.66335 * 5 4 2 23 23 C 1.54599 * 110.31225 * 237.80875 * 2 1 3 24 24 H 1.08999 * 110.72827 * 144.68384 * 23 2 1 25 25 O 1.42908 * 110.72184 * 21.57358 * 23 2 1 26 26 H 1.08998 * 109.47466 * 299.36529 * 1 2 3 27 27 H 1.09005 * 109.47329 * 59.36036 * 1 2 3 28 28 H 1.08993 * 109.47531 * 179.36114 * 1 2 3 29 29 H 1.09000 * 109.46912 * 180.63647 * 3 2 1 30 30 H 1.08998 * 109.46824 * 300.63743 * 3 2 1 31 31 H 1.08996 * 109.46806 * 60.63390 * 3 2 1 32 32 H 1.08998 * 109.91965 * 0.79014 * 4 2 1 33 33 H 1.08999 * 110.08148 * 239.58050 * 4 2 1 34 34 H 1.09002 * 109.47095 * 49.99657 * 6 5 4 35 35 H 1.09000 * 109.46974 * 289.99795 * 6 5 4 36 36 H 1.07999 * 119.96556 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.03238 * 179.74272 * 9 8 7 38 38 H 0.96996 * 119.99996 * 180.02562 * 15 14 12 39 39 H 1.07996 * 120.03759 * 180.02562 * 20 10 9 40 40 H 1.08006 * 119.96319 * 179.97438 * 21 20 10 41 41 H 1.09003 * 110.66488 * 157.64322 * 22 5 4 42 42 H 1.08995 * 110.67238 * 280.77289 * 22 5 4 43 43 H 0.96699 * 113.99778 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0644 -0.7672 1.2235 5 7 2.8809 -1.8884 0.7099 6 6 2.7668 -3.0653 1.5816 7 6 3.4044 -4.2531 0.9079 8 6 2.6479 -5.0687 0.0862 9 6 3.2283 -6.1607 -0.5287 10 6 4.5754 -6.4330 -0.3298 11 8 5.1499 -7.5026 -0.9370 12 6 4.3348 -8.3257 -1.6269 13 1 3.2908 -8.0762 -1.7464 14 6 4.8367 -9.4925 -2.1829 15 7 6.1085 -9.7963 -2.0376 16 14 3.7072 -10.6332 -3.1381 17 1 3.7076 -10.2441 -4.5712 18 1 4.1881 -12.0318 -3.0047 19 1 2.3278 -10.5304 -2.5977 20 6 5.3336 -5.6090 0.4917 21 6 4.7460 -4.5221 1.1086 22 6 2.3583 -2.1803 -0.6495 23 6 2.0666 -0.7724 -1.2270 24 1 2.9806 -0.3126 -1.6027 25 8 1.0764 -0.8390 -2.2553 26 1 -0.3634 0.5039 0.8956 27 1 -0.3634 0.5238 -0.8842 28 1 -0.3634 -1.0275 -0.0115 29 1 3.1500 1.4199 -0.0114 30 1 1.6948 1.9575 -0.8842 31 1 1.7133 1.9506 0.8956 32 1 1.2323 -1.1532 1.8124 33 1 2.6804 -0.1102 1.8375 34 1 1.7144 -3.2767 1.7708 35 1 3.2734 -2.8682 2.5263 36 1 1.6015 -4.8534 -0.0720 37 1 2.6360 -6.7996 -1.1669 38 1 6.4597 -10.6124 -2.4269 39 1 6.3816 -5.8180 0.6480 40 1 5.3350 -3.8812 1.7480 41 1 3.1104 -2.6935 -1.2488 42 1 1.4433 -2.7696 -0.5917 43 1 1.3632 -1.3140 -3.0472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279854883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:22 Heat of formation + Delta-G solvation = -50.518117 kcal Electronic energy + Delta-G solvation = -23286.985846 eV Core-core repulsion = 19911.639255 eV Total energy + Delta-G solvation = -3375.346591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07878 -38.93951 -36.91546 -35.73464 -34.02944 -32.29552 -30.21317 -30.10724 -28.46489 -27.48032 -26.12877 -25.14136 -23.82300 -22.04165 -21.45209 -20.26986 -19.13044 -17.98794 -17.41571 -16.92253 -15.97119 -15.24877 -14.86334 -14.59150 -14.53789 -14.23774 -13.91225 -13.87554 -13.58127 -13.45527 -13.22737 -12.78441 -12.60061 -12.48171 -12.28130 -12.13059 -11.88068 -11.71150 -11.50378 -11.36564 -11.08027 -11.05901 -10.71937 -10.64362 -10.46295 -10.44169 -10.39250 -9.95621 -9.34914 -8.85768 -8.38203 -8.18480 -7.19143 -6.47011 -4.05999 2.20596 2.26013 3.10797 3.12062 3.16819 3.80953 3.94861 4.31852 4.35721 4.52710 4.68007 4.79785 5.07035 5.08053 5.18272 5.25703 5.29368 5.33169 5.36303 5.45488 5.54548 5.60210 5.66104 5.77721 5.79804 5.81034 5.84825 5.86000 5.99206 6.07136 6.09262 6.19850 6.25377 6.41038 6.68998 6.84339 6.88217 7.05737 7.07290 7.25491 7.37692 7.42620 7.53921 7.81082 7.97971 8.98619 9.68824 10.70996 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.003354 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.143385 B = 8347.469844 C = 8975.585057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.068 4.068 3 C -0.135 4.135 4 C 0.041 3.959 5 N -0.507 5.507 6 C 0.105 3.895 7 C -0.185 4.185 8 C -0.064 4.064 9 C -0.235 4.235 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.195 4.195 21 C -0.052 4.052 22 C 0.012 3.988 23 C 0.104 3.896 24 H 0.070 0.930 25 O -0.561 6.561 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.126 0.874 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 17.418 3.694 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.069 4.069 3 C -0.193 4.193 4 C -0.087 4.087 5 N -0.232 5.232 6 C -0.022 4.022 7 C -0.187 4.187 8 C -0.083 4.083 9 C -0.254 4.254 10 C 0.103 3.897 11 O -0.081 6.081 12 C -0.469 4.469 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.497 5.497 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.192 1.192 20 C -0.214 4.214 21 C -0.071 4.071 22 C -0.116 4.116 23 C 0.044 3.956 24 H 0.088 0.912 25 O -0.366 6.366 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.423 17.612 4.049 19.938 hybrid contribution -1.086 -1.273 -0.837 1.871 sum -9.509 16.339 3.212 19.176 Atomic orbital electron populations 1.21614 0.93369 1.01916 1.01331 1.21401 0.96546 0.95494 0.93460 1.21854 1.01100 0.94524 1.01806 1.23076 0.95855 0.93712 0.96068 1.64866 1.50043 1.06068 1.02183 1.20996 0.97970 0.87891 0.95327 1.19075 0.94795 0.99030 1.05753 1.20601 0.97929 0.94127 0.95647 1.21111 0.95746 1.01245 1.07289 1.19400 0.91211 0.88553 0.90585 1.83980 1.35722 1.30820 1.57562 1.21320 0.92878 1.01375 1.31286 0.89111 1.25288 0.96729 0.96796 0.97675 1.70038 1.12586 1.24828 1.42261 0.85720 0.79332 0.78991 0.79441 1.19862 1.20225 1.19206 1.20224 1.00060 0.98170 1.02951 1.20467 0.93659 0.95266 0.97732 1.23848 0.99539 0.96700 0.91504 1.22799 0.90303 0.94760 0.87718 0.91212 1.86474 1.42053 1.79468 1.28567 0.93191 0.91807 0.92824 0.92135 0.92453 0.92435 0.93518 0.90163 0.94817 0.90550 0.88079 0.85670 0.91996 0.86545 0.86978 0.89478 0.92916 0.77372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 7.55 37.15 0.28 -0.97 16 2 C -0.07 -0.70 0.95 -153.15 -0.15 -0.85 16 3 C -0.14 -1.18 8.23 37.16 0.31 -0.88 16 4 C 0.04 0.44 6.02 -2.76 -0.02 0.43 16 5 N -0.51 -6.63 5.39 -231.89 -1.25 -7.88 16 6 C 0.11 1.45 5.18 -4.97 -0.03 1.43 16 7 C -0.19 -3.13 4.61 -104.58 -0.48 -3.61 16 8 C -0.06 -1.16 8.32 -39.61 -0.33 -1.49 16 9 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 O -0.18 -5.06 9.76 0.06 0.00 -5.06 16 12 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 13 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 15 N -0.86 -25.23 13.67 55.48 0.76 -24.48 16 16 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 21 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 22 C 0.01 0.16 4.69 -1.90 -0.01 0.15 16 23 C 0.10 1.16 3.84 -24.87 -0.10 1.06 16 24 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 25 O -0.56 -6.01 11.90 -35.23 -0.42 -6.43 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.50 7.11 -51.93 -0.37 0.13 16 33 H 0.08 0.81 7.69 -51.93 -0.40 0.41 16 34 H 0.03 0.45 7.76 -51.93 -0.40 0.05 16 35 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.10 1.62 7.36 -52.49 -0.39 1.23 16 37 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.09 1.28 7.73 -51.93 -0.40 0.88 16 42 H 0.05 0.72 7.07 -51.93 -0.37 0.36 16 43 H 0.38 2.83 9.12 45.56 0.42 3.25 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -30.62 344.86 -8.25 -38.87 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.80 Total: 6.48 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.72 Total: -22.10 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: -0.49 Total: -32.36 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.42 Total: -11.49 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.62 -8.25 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279854883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.644 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds