Wall clock time and date at job start Tue Mar 31 2020 07:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 110.27548 * 2 1 4 4 C 1.53992 * 110.30777 * 122.09067 * 2 1 3 5 5 N 1.47901 * 107.05690 * 120.14489 * 4 2 1 6 6 C 1.46906 * 110.99911 * 214.15455 * 5 4 2 7 7 C 1.50701 * 109.47181 * 169.99674 * 6 5 4 8 8 C 1.38305 * 119.92884 * 270.27442 * 7 6 5 9 9 C 1.38104 * 120.06272 * 180.23165 * 8 7 6 10 10 C 1.38874 * 119.93261 * 359.47791 * 9 8 7 11 11 O 1.35748 * 120.06919 * 180.25382 * 10 9 8 12 12 C 1.34830 * 117.00158 * 354.45958 * 11 10 9 13 13 H 1.08005 * 119.99657 * 5.05386 * 12 11 10 14 14 C 1.38652 * 120.00222 * 185.06116 * 12 11 10 15 15 N 1.31559 * 120.00021 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00107 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47288 * 89.99329 * 16 14 12 18 18 H 1.48495 * 109.47418 * 209.99891 * 16 14 12 19 19 H 1.48508 * 109.46909 * 329.99556 * 16 14 12 20 20 C 1.38882 * 119.86307 * 0.26829 * 10 9 8 21 21 C 1.38102 * 119.92770 * 0.02562 * 20 10 9 22 22 C 1.48534 * 105.81953 * 334.66335 * 5 4 2 23 23 C 1.54599 * 110.31225 * 237.80875 * 2 1 3 24 24 H 1.08999 * 110.72827 * 144.68384 * 23 2 1 25 25 O 1.42908 * 110.72184 * 21.57358 * 23 2 1 26 26 H 1.08998 * 109.47466 * 299.36529 * 1 2 3 27 27 H 1.09005 * 109.47329 * 59.36036 * 1 2 3 28 28 H 1.08993 * 109.47531 * 179.36114 * 1 2 3 29 29 H 1.09000 * 109.46912 * 180.63647 * 3 2 1 30 30 H 1.08998 * 109.46824 * 300.63743 * 3 2 1 31 31 H 1.08996 * 109.46806 * 60.63390 * 3 2 1 32 32 H 1.08998 * 109.91965 * 0.79014 * 4 2 1 33 33 H 1.08999 * 110.08148 * 239.58050 * 4 2 1 34 34 H 1.09002 * 109.47095 * 49.99657 * 6 5 4 35 35 H 1.09000 * 109.46974 * 289.99795 * 6 5 4 36 36 H 1.07999 * 119.96556 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.03238 * 179.74272 * 9 8 7 38 38 H 0.96996 * 119.99996 * 180.02562 * 15 14 12 39 39 H 1.07996 * 120.03759 * 180.02562 * 20 10 9 40 40 H 1.08006 * 119.96319 * 179.97438 * 21 20 10 41 41 H 1.09003 * 110.66488 * 157.64322 * 22 5 4 42 42 H 1.08995 * 110.67238 * 280.77289 * 22 5 4 43 43 H 0.96699 * 113.99778 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0644 -0.7672 1.2235 5 7 2.8809 -1.8884 0.7099 6 6 2.7668 -3.0653 1.5816 7 6 3.4044 -4.2531 0.9079 8 6 2.6479 -5.0687 0.0862 9 6 3.2283 -6.1607 -0.5287 10 6 4.5754 -6.4330 -0.3298 11 8 5.1499 -7.5026 -0.9370 12 6 4.3348 -8.3257 -1.6269 13 1 3.2908 -8.0762 -1.7464 14 6 4.8367 -9.4925 -2.1829 15 7 6.1085 -9.7963 -2.0376 16 14 3.7072 -10.6332 -3.1381 17 1 3.7076 -10.2441 -4.5712 18 1 4.1881 -12.0318 -3.0047 19 1 2.3278 -10.5304 -2.5977 20 6 5.3336 -5.6090 0.4917 21 6 4.7460 -4.5221 1.1086 22 6 2.3583 -2.1803 -0.6495 23 6 2.0666 -0.7724 -1.2270 24 1 2.9806 -0.3126 -1.6027 25 8 1.0764 -0.8390 -2.2553 26 1 -0.3634 0.5039 0.8956 27 1 -0.3634 0.5238 -0.8842 28 1 -0.3634 -1.0275 -0.0115 29 1 3.1500 1.4199 -0.0114 30 1 1.6948 1.9575 -0.8842 31 1 1.7133 1.9506 0.8956 32 1 1.2323 -1.1532 1.8124 33 1 2.6804 -0.1102 1.8375 34 1 1.7144 -3.2767 1.7708 35 1 3.2734 -2.8682 2.5263 36 1 1.6015 -4.8534 -0.0720 37 1 2.6360 -6.7996 -1.1669 38 1 6.4597 -10.6124 -2.4269 39 1 6.3816 -5.8180 0.6480 40 1 5.3350 -3.8812 1.7480 41 1 3.1104 -2.6935 -1.2488 42 1 1.4433 -2.7696 -0.5917 43 1 1.3632 -1.3140 -3.0472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279854883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:22 Heat of formation + Delta-G solvation = -72.340853 kcal Electronic energy + Delta-G solvation = -23287.932151 eV Core-core repulsion = 19911.639255 eV Total energy + Delta-G solvation = -3376.292895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17965 -40.50038 -38.48558 -36.75462 -35.06394 -34.23289 -31.82816 -31.46657 -29.53995 -28.20275 -27.70136 -26.64864 -24.89641 -23.65836 -22.68687 -21.65696 -20.02137 -19.80146 -18.79910 -18.28514 -16.94026 -16.54978 -16.46012 -16.17354 -15.65719 -15.50888 -15.29004 -15.14179 -14.95967 -14.64681 -14.37993 -14.30928 -13.93655 -13.60562 -13.46755 -13.17554 -12.99511 -12.96520 -12.84576 -12.52737 -12.48838 -12.28157 -12.14901 -12.00419 -11.83925 -11.61401 -11.25225 -11.18779 -10.83991 -10.80095 -9.78543 -9.42702 -8.90066 -8.48236 -6.16543 0.58393 0.65298 1.34083 1.43117 1.51535 2.16678 2.71297 2.96158 3.18147 3.49096 3.51272 3.55520 3.69358 3.95166 4.01154 4.06101 4.18357 4.25808 4.30912 4.40065 4.47225 4.58520 4.67140 4.69858 4.78604 4.81680 4.85559 4.89886 4.95424 5.05263 5.07115 5.09525 5.13709 5.23453 5.28975 5.37092 5.46899 5.55199 5.69737 5.76186 5.92272 6.01798 6.05302 6.21495 6.82590 6.96484 7.77329 8.75031 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.003354 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.143385 B = 8347.469844 C = 8975.585057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.069 4.069 3 C -0.132 4.132 4 C 0.043 3.957 5 N -0.515 5.515 6 C 0.107 3.893 7 C -0.158 4.158 8 C -0.060 4.060 9 C -0.242 4.242 10 C 0.116 3.884 11 O -0.232 6.232 12 C -0.414 4.414 13 H 0.101 0.899 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.254 1.254 20 C -0.205 4.205 21 C -0.046 4.046 22 C 0.014 3.986 23 C 0.107 3.893 24 H 0.070 0.930 25 O -0.569 6.569 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.273 0.727 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 19.903 4.806 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.069 4.069 3 C -0.189 4.189 4 C -0.085 4.085 5 N -0.240 5.240 6 C -0.020 4.020 7 C -0.159 4.159 8 C -0.078 4.078 9 C -0.261 4.261 10 C 0.066 3.934 11 O -0.139 6.139 12 C -0.490 4.490 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.837 3.163 17 H -0.187 1.187 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.224 4.224 21 C -0.065 4.065 22 C -0.115 4.115 23 C 0.047 3.953 24 H 0.088 0.912 25 O -0.375 6.375 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.164 0.836 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.653 20.154 5.181 23.378 hybrid contribution -0.478 -1.713 -1.018 2.049 sum -11.131 18.441 4.162 21.939 Atomic orbital electron populations 1.21568 0.93164 1.01182 1.01837 1.21445 0.96668 0.96217 0.92599 1.21824 1.01007 0.93509 1.02561 1.23145 0.96026 0.92949 0.96368 1.64835 1.50982 1.06164 1.01977 1.21043 0.98569 0.86708 0.95721 1.19549 0.94246 0.98969 1.03167 1.20868 0.99304 0.92822 0.94832 1.21183 0.94845 1.02365 1.07691 1.19922 0.92836 0.88577 0.92067 1.83944 1.37125 1.32831 1.59982 1.21806 0.93498 1.02020 1.31682 0.88207 1.26581 0.98479 0.98275 0.98638 1.70183 1.14963 1.25956 1.44774 0.84599 0.77391 0.76350 0.77955 1.18731 1.19550 1.17724 1.20471 1.00096 0.98885 1.02977 1.20844 0.94409 0.94186 0.97046 1.23774 0.98375 0.97708 0.91633 1.22766 0.90576 0.93668 0.88278 0.91188 1.86453 1.42211 1.79717 1.29155 0.91603 0.92435 0.94092 0.92194 0.92518 0.90950 0.92807 0.88785 0.93601 0.88549 0.85402 0.86550 0.91811 0.86916 0.83578 0.91745 0.93557 0.75940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 7.55 71.98 0.54 -1.52 16 2 C -0.07 -1.19 0.95 -51.30 -0.05 -1.24 16 3 C -0.13 -1.87 8.23 71.98 0.59 -1.27 16 4 C 0.04 0.76 6.02 86.45 0.52 1.28 16 5 N -0.51 -11.68 5.39 -887.56 -4.78 -16.46 16 6 C 0.11 2.51 5.18 85.56 0.44 2.95 16 7 C -0.16 -4.92 4.61 -19.84 -0.09 -5.01 16 8 C -0.06 -2.06 8.32 22.25 0.19 -1.88 16 9 C -0.24 -10.55 9.17 22.39 0.21 -10.34 16 10 C 0.12 5.83 6.65 22.58 0.15 5.98 16 11 O -0.23 -14.09 9.76 -22.72 -0.22 -14.31 16 12 C -0.41 -24.25 9.49 67.92 0.64 -23.60 16 13 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 14 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 15 N -0.92 -56.76 13.67 21.61 0.30 -56.47 16 16 Si 1.02 42.94 29.55 68.60 2.03 44.96 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 20 C -0.21 -8.79 9.99 22.39 0.22 -8.57 16 21 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 22 C 0.01 0.33 4.69 86.65 0.41 0.73 16 23 C 0.11 2.15 3.84 31.80 0.12 2.28 16 24 H 0.07 1.41 7.86 -2.39 -0.02 1.39 16 25 O -0.57 -11.16 11.90 -148.98 -1.77 -12.93 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.06 7.65 -2.38 -0.02 1.05 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.91 7.11 -2.39 -0.02 0.89 16 33 H 0.09 1.46 7.69 -2.39 -0.02 1.44 16 34 H 0.05 1.02 7.76 -2.39 -0.02 1.00 16 35 H 0.10 1.98 8.08 -2.39 -0.02 1.96 16 36 H 0.13 3.75 7.36 -2.91 -0.02 3.73 16 37 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 40 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.06 1.82 7.73 -2.39 -0.02 1.80 16 42 H 0.05 1.16 7.07 -2.39 -0.02 1.15 16 43 H 0.39 5.31 9.12 -74.06 -0.68 4.63 16 Total: -1.00 -70.32 344.86 0.45 -69.87 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.33 Total: 27.72 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 4.58 Total: -42.38 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -4.49 Total: -72.93 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -2.00 Total: -27.24 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.32 0.45 -69.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279854883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.473 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds