Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34236 * 117.00036 * 2 1 4 4 O 1.20825 * 119.99534 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99767 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47014 * 299.99346 * 5 3 2 7 7 C 1.52995 * 109.47602 * 59.99897 * 5 3 2 8 8 C 1.50700 * 109.47635 * 184.99945 * 7 5 3 9 9 C 1.38235 * 120.00273 * 89.99495 * 8 7 5 10 10 C 1.38234 * 120.00220 * 179.97438 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.50693 * 120.00207 * 179.72405 * 11 10 9 13 13 C 1.38238 * 119.99747 * 359.50225 * 11 10 9 14 14 C 1.38234 * 120.00083 * 0.44989 * 13 11 10 15 15 N 1.46907 * 109.47002 * 179.97438 * 5 3 2 16 16 C 1.46896 * 110.99903 * 84.99620 * 15 5 3 17 17 C 1.52998 * 109.47418 * 180.02562 * 16 15 5 18 18 C 1.50694 * 109.47700 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99642 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00267 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99914 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47286 * 60.00085 * 22 20 18 24 24 H 1.48498 * 109.47018 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47311 * 299.99763 * 22 20 18 26 26 H 1.09000 * 109.47402 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47365 * 299.99952 * 1 2 3 28 28 H 1.08996 * 109.47627 * 59.99798 * 1 2 3 29 29 H 1.08999 * 109.47580 * 64.99563 * 7 5 3 30 30 H 1.09009 * 109.47230 * 304.99949 * 7 5 3 31 31 H 1.07999 * 119.99770 * 359.97438 * 9 8 7 32 32 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47363 * 89.99511 * 12 11 10 34 34 H 1.09000 * 109.47097 * 209.99342 * 12 11 10 35 35 H 1.09001 * 109.47081 * 329.99847 * 12 11 10 36 36 H 1.07999 * 119.99927 * 180.28388 * 13 11 10 37 37 H 1.08002 * 120.00281 * 179.83134 * 14 13 11 38 38 H 1.00897 * 111.00027 * 208.95356 * 15 5 3 39 39 H 1.08997 * 109.47607 * 300.00128 * 16 15 5 40 40 H 1.09006 * 109.47398 * 60.00228 * 16 15 5 41 41 H 1.09006 * 109.47034 * 300.00518 * 17 16 15 42 42 H 1.09006 * 109.46659 * 59.99765 * 17 16 15 43 43 H 0.96998 * 119.99938 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9563 0.7806 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6184 0.5521 -1.1904 9 6 6.2659 -0.5154 -0.5969 10 6 7.6469 -0.5427 -0.5426 11 6 8.3803 0.5004 -1.0764 12 6 9.8856 0.4736 -1.0117 13 6 7.7330 1.5658 -1.6738 14 6 6.3520 1.5926 -1.7290 15 7 3.9828 2.6836 -0.0011 16 6 4.0179 3.2227 1.3650 17 6 4.4543 4.6885 1.3238 18 6 4.4910 5.2414 2.7252 19 1 4.2295 4.6102 3.5616 20 6 4.8593 6.5526 2.9396 21 7 5.1781 7.3210 1.9211 22 14 4.9053 7.2377 4.6768 23 1 5.8700 6.4563 5.4917 24 1 5.3288 8.6604 4.6368 25 1 3.5530 7.1412 5.2831 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.7951 1.1287 -2.1377 30 1 3.7311 -0.4385 -1.2961 31 1 5.6927 -1.3281 -0.1757 32 1 8.1527 -1.3769 -0.0792 33 1 10.2789 -0.0177 -1.9016 34 1 10.2653 1.4942 -0.9624 35 1 10.2014 -0.0749 -0.1243 36 1 8.3061 2.3785 -2.0950 37 1 5.8462 2.4262 -2.1933 38 1 4.8756 2.7965 -0.4574 39 1 3.0250 3.1520 1.8091 40 1 4.7255 2.6492 1.9639 41 1 5.4472 4.7596 0.8795 42 1 3.7464 5.2616 0.7250 43 1 5.4369 8.2436 2.0719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281045440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -95.005193 kcal Electronic energy + Delta-G solvation = -23056.520442 eV Core-core repulsion = 19679.244747 eV Total energy + Delta-G solvation = -3377.275695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63994 -40.40644 -38.18941 -37.12934 -35.63211 -34.28811 -32.38484 -31.81412 -30.03852 -29.00673 -27.32067 -25.82338 -24.60252 -23.62366 -22.55356 -21.73732 -21.33741 -18.74263 -18.57476 -17.77797 -17.35664 -16.75065 -16.69948 -16.50924 -16.28125 -15.86048 -15.52828 -15.09537 -14.62422 -14.49132 -14.32852 -14.24999 -14.13417 -13.59407 -13.45615 -13.20387 -13.18841 -12.95284 -12.82835 -12.67253 -12.53896 -12.37303 -12.06595 -11.97643 -11.78163 -11.75312 -11.54040 -11.32849 -11.28581 -10.57851 -9.81974 -9.47202 -9.38802 -8.21481 -6.33456 0.37692 0.52199 1.21681 1.38294 1.42485 1.50260 1.66093 2.39324 2.82515 3.11605 3.19140 3.65215 3.87778 3.92141 4.02700 4.08911 4.18486 4.20053 4.33700 4.34756 4.37194 4.43636 4.50848 4.60625 4.71340 4.71899 4.84698 4.87234 4.91060 4.99177 5.02727 5.22171 5.31204 5.35492 5.37787 5.53374 5.60151 5.68154 5.73232 5.74174 5.97805 6.15235 6.17577 6.39030 6.81812 6.83462 7.35340 8.90776 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008979 B = 0.005222 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.617091 B = 5360.735514 C = 7906.471848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.521 6.521 5 C 0.104 3.896 6 H 0.091 0.909 7 C -0.065 4.065 8 C -0.104 4.104 9 C -0.112 4.112 10 C -0.126 4.126 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.132 4.132 14 C -0.127 4.127 15 N -0.683 5.683 16 C 0.088 3.912 17 C 0.037 3.963 18 C -0.547 4.547 19 H 0.059 0.941 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.968 3.032 23 H -0.264 1.264 24 H -0.280 1.280 25 H -0.269 1.269 26 H 0.139 0.861 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.355 0.645 39 H 0.046 0.954 40 H 0.027 0.973 41 H -0.005 1.005 42 H -0.011 1.011 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -21.758 -7.227 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.304 3.696 4 O -0.408 6.408 5 C -0.008 4.008 6 H 0.109 0.891 7 C -0.103 4.103 8 C -0.105 4.105 9 C -0.129 4.129 10 C -0.144 4.144 11 C -0.097 4.097 12 C -0.170 4.170 13 C -0.151 4.151 14 C -0.145 4.145 15 N -0.320 5.320 16 C -0.041 4.041 17 C 0.000 4.000 18 C -0.585 4.585 19 H 0.077 0.923 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.792 3.208 23 H -0.188 1.188 24 H -0.205 1.205 25 H -0.194 1.194 26 H 0.157 0.843 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.179 0.821 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.014 0.986 42 H 0.008 0.992 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.670 -21.054 -7.416 22.384 hybrid contribution 0.382 0.817 0.975 1.328 sum 2.051 -20.237 -6.441 21.336 Atomic orbital electron populations 1.23531 0.75069 1.05763 1.02143 1.86466 1.24696 1.32222 1.84074 1.24095 0.92319 0.81322 0.71883 1.90685 1.67368 1.37790 1.44951 1.21075 0.87084 0.90790 1.01812 0.89108 1.20654 0.91428 1.02769 0.95422 1.19789 0.94744 0.95625 1.00297 1.21326 0.94903 0.98238 0.98463 1.21337 0.93997 0.98915 1.00171 1.20291 0.97498 0.94393 0.97482 1.20837 0.89750 1.03124 1.03323 1.21267 0.94468 0.98924 1.00394 1.21272 0.94642 0.98317 1.00293 1.60029 1.36847 1.15327 1.19760 1.21809 0.98670 0.96195 0.87408 1.18843 0.94403 0.91037 0.95748 1.21527 1.46215 0.97156 0.93629 0.92314 1.25976 0.94539 0.97286 1.01761 1.70104 1.46543 1.07632 1.32705 0.85463 0.78963 0.77334 0.79049 1.18819 1.20512 1.19433 0.84271 0.92861 0.92209 0.89848 0.86430 0.83661 0.83824 0.89920 0.91627 0.90534 0.85453 0.86092 0.82051 0.93530 0.95511 0.98649 0.99237 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -8.96 10.37 -51.47 -0.53 -9.49 16 3 C 0.46 14.97 7.13 71.23 0.51 15.48 16 4 O -0.52 -21.63 15.67 21.97 0.34 -21.28 16 5 C 0.10 3.11 2.55 44.16 0.11 3.22 16 6 H 0.09 2.54 7.80 -2.39 -0.02 2.52 16 7 C -0.07 -1.47 4.94 29.85 0.15 -1.33 16 8 C -0.10 -2.43 4.84 -19.87 -0.10 -2.52 16 9 C -0.11 -2.23 9.70 22.27 0.22 -2.02 16 10 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 11 C -0.10 -2.06 5.88 -19.87 -0.12 -2.18 16 12 C -0.11 -1.82 10.01 71.23 0.71 -1.10 16 13 C -0.13 -3.22 9.70 22.27 0.22 -3.00 16 14 C -0.13 -3.26 8.04 22.27 0.18 -3.09 16 15 N -0.68 -26.41 5.84 -495.46 -2.89 -29.31 16 16 C 0.09 4.04 5.32 86.30 0.46 4.50 16 17 C 0.04 2.11 5.23 29.85 0.16 2.27 16 18 C -0.55 -32.73 9.11 25.60 0.23 -32.50 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 20 C 0.00 0.15 5.46 84.66 0.46 0.62 16 21 N -0.93 -58.44 13.29 21.45 0.28 -58.15 16 22 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 28 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 29 H 0.08 1.95 8.09 -2.39 -0.02 1.93 16 30 H 0.12 2.02 7.94 -2.38 -0.02 2.00 16 31 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 35 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 36 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.12 3.18 7.53 -2.91 -0.02 3.15 16 38 H 0.36 13.07 5.49 -89.70 -0.49 12.57 16 39 H 0.05 2.26 7.62 -2.39 -0.02 2.24 16 40 H 0.03 1.17 8.06 -2.38 -0.02 1.15 16 41 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 42 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -75.27 361.97 4.32 -70.95 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.49 Total: 21.85 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.60 Total: -22.15 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -2.61 Total: -87.46 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.19 Total: -30.77 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.27 4.32 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281045440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.054 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds