Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00306 * 2 1 4 4 C 1.38752 * 120.05204 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94680 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05036 * 359.72376 * 5 4 3 7 7 C 1.50696 * 119.94284 * 180.29502 * 6 5 4 8 8 C 1.38244 * 120.11199 * 0.55704 * 6 5 4 9 9 C 1.38171 * 120.05436 * 359.44067 * 8 6 5 10 10 C 1.50699 * 120.02521 * 180.30143 * 9 8 6 11 11 H 1.09000 * 109.46874 * 145.00502 * 10 9 8 12 12 C 1.53003 * 109.47230 * 265.00014 * 10 9 8 13 13 N 1.46496 * 109.47430 * 25.00555 * 10 9 8 14 14 C 1.34773 * 120.00398 * 154.99936 * 13 10 9 15 15 O 1.21285 * 119.99551 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00270 * 179.97438 * 14 13 10 17 17 C 1.52998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47052 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00407 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99962 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99683 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00019 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46982 * 89.99933 * 22 20 18 24 24 H 1.48496 * 109.47084 * 210.00143 * 22 20 18 25 25 H 1.48500 * 109.47199 * 330.00149 * 22 20 18 26 26 H 1.09002 * 109.47042 * 299.99603 * 1 2 3 27 27 H 1.08996 * 109.47358 * 60.00240 * 1 2 3 28 28 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.02878 * 0.04060 * 4 3 2 30 30 H 1.07994 * 119.97734 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47547 * 270.25093 * 7 6 5 32 32 H 1.08996 * 109.47057 * 30.25908 * 7 6 5 33 33 H 1.09005 * 109.46844 * 150.25442 * 7 6 5 34 34 H 1.08002 * 119.97539 * 179.72689 * 8 6 5 35 35 H 1.09000 * 109.46794 * 60.00438 * 12 10 9 36 36 H 1.08998 * 109.47218 * 180.02562 * 12 10 9 37 37 H 1.09006 * 109.47087 * 300.00630 * 12 10 9 38 38 H 0.97003 * 119.99623 * 334.99517 * 13 10 9 39 39 H 1.09000 * 109.46495 * 299.99399 * 16 14 13 40 40 H 1.09000 * 109.47007 * 59.99885 * 16 14 13 41 41 H 1.09010 * 109.46897 * 299.99544 * 17 16 14 42 42 H 1.08999 * 109.47349 * 59.99414 * 17 16 14 43 43 H 0.97003 * 119.99504 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6757 0.0047 7 6 3.9861 5.0184 0.0108 8 6 4.0560 2.5171 -0.0006 9 6 3.4311 1.2848 0.0000 10 6 4.2537 0.0221 0.0010 11 1 3.7465 -0.7415 0.5907 12 6 4.4273 -0.4748 -1.4356 13 7 5.5689 0.2966 0.5851 14 6 6.2758 -0.7008 1.1525 15 8 5.8228 -1.8256 1.1800 16 6 7.6289 -0.4186 1.7528 17 6 8.2128 -1.7119 2.3249 18 6 9.5663 -1.4297 2.9247 19 1 9.9698 -0.4283 2.8999 20 6 10.2894 -2.4502 3.5051 21 7 11.4703 -2.2039 4.0289 22 14 9.5912 -4.1823 3.5486 23 1 10.0093 -4.9153 2.3266 24 1 10.1006 -4.8912 4.7498 25 1 8.1087 -4.1171 3.6037 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2128 2.3203 -0.0003 30 1 1.3340 4.5113 -0.0011 31 1 4.1512 5.3469 -1.0154 32 1 3.3580 5.7438 0.5279 33 1 4.9440 4.9358 0.5244 34 1 5.1344 2.5751 -0.0005 35 1 4.9345 0.2888 -2.0253 36 1 5.0219 -1.3883 -1.4348 37 1 3.4487 -0.6790 -1.8702 38 1 5.9310 1.1962 0.5634 39 1 8.2943 -0.0297 0.9820 40 1 7.5263 0.3179 2.5498 41 1 7.5475 -2.1012 3.0956 42 1 8.3154 -2.4481 1.5277 43 1 11.9792 -2.9219 4.4368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291009712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -64.387636 kcal Electronic energy + Delta-G solvation = -22890.181707 eV Core-core repulsion = 19514.233689 eV Total energy + Delta-G solvation = -3375.948018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.75728 -39.21470 -37.94050 -35.62082 -33.42480 -32.37702 -31.61599 -30.96399 -29.49843 -28.15879 -26.16999 -26.08115 -24.01044 -22.34552 -21.13265 -20.33165 -19.63761 -18.31434 -17.19758 -16.69314 -16.11580 -15.98581 -15.66531 -14.96988 -14.84240 -14.52980 -14.13032 -14.06440 -13.99144 -13.61793 -13.46738 -13.10458 -12.62513 -12.51873 -12.42839 -12.31770 -12.13068 -11.98584 -11.84187 -11.36709 -11.31619 -11.12122 -10.91947 -10.78686 -10.11109 -9.99419 -9.74136 -9.22848 -9.15311 -9.07997 -8.83726 -8.47042 -8.23078 -5.99638 -3.97984 1.03576 1.14499 3.01857 3.20326 3.39304 3.41201 3.47450 3.54690 3.59337 4.37765 4.50848 4.54588 4.60569 4.73362 4.85015 4.97981 5.06278 5.12000 5.20732 5.32271 5.33887 5.36074 5.37761 5.40195 5.53223 5.66992 5.73224 5.80185 5.89415 6.03753 6.11375 6.15077 6.20976 6.27462 6.33479 6.50595 6.74279 6.77823 7.12337 7.41778 7.48884 7.81125 7.86434 8.54310 8.73519 9.03794 9.63721 11.13246 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.003336 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.409169 B = 8390.025517 C = 9293.121662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.130 3.870 4 C -0.201 4.201 5 C -0.085 4.085 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.079 4.079 9 C -0.111 4.111 10 C 0.190 3.810 11 H 0.099 0.901 12 C -0.153 4.153 13 N -0.738 5.738 14 C 0.511 3.489 15 O -0.539 6.539 16 C -0.122 4.122 17 C 0.002 3.998 18 C -0.524 4.524 19 H 0.072 0.928 20 C 0.068 3.932 21 N -0.905 5.905 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.395 0.605 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.019 0.981 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.311 13.810 -11.461 29.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.084 3.916 4 C -0.220 4.220 5 C -0.103 4.103 6 C -0.118 4.118 7 C -0.167 4.167 8 C -0.097 4.097 9 C -0.112 4.112 10 C 0.085 3.915 11 H 0.117 0.883 12 C -0.211 4.211 13 N -0.394 5.394 14 C 0.300 3.700 15 O -0.415 6.415 16 C -0.162 4.162 17 C -0.036 4.036 18 C -0.562 4.562 19 H 0.090 0.910 20 C -0.133 4.133 21 N -0.544 5.544 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.402 12.689 -11.333 28.933 hybrid contribution -0.418 -0.259 0.044 0.494 sum -23.820 12.431 -11.289 29.144 Atomic orbital electron populations 1.23065 0.78440 1.04099 1.01160 1.86128 1.21252 1.26544 1.88464 1.18717 0.91385 0.84457 0.97003 1.21181 0.99922 0.92193 1.08711 1.20803 0.93934 0.96955 0.98584 1.19796 0.93597 0.95466 1.02963 1.20740 1.00529 0.93239 1.02242 1.20656 0.99753 0.90542 0.98766 1.19337 0.90741 0.95593 1.05556 1.19491 0.83074 0.93690 0.95233 0.88299 1.22101 1.02172 1.01723 0.95123 1.46395 1.19158 1.12431 1.61388 1.21522 0.87640 0.84340 0.76504 1.90650 1.71036 1.22279 1.57488 1.21670 0.90821 1.03065 1.00674 1.19367 0.96144 0.91804 0.96325 1.21127 1.00516 0.97252 1.37284 0.90951 1.24974 0.94595 0.99059 0.94647 1.69916 1.12243 1.32965 1.39231 0.86795 0.80566 0.84685 0.77514 1.20250 1.21482 1.18490 0.92692 0.92721 0.88125 0.85377 0.85840 0.91334 0.91687 0.91323 0.85306 0.92639 0.91501 0.91802 0.76864 0.89649 0.89648 0.95817 0.96253 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.49 9.63 -19.42 -0.19 -3.68 16 3 C 0.13 1.47 6.66 -39.22 -0.26 1.21 16 4 C -0.20 -1.85 9.04 -39.43 -0.36 -2.21 16 5 C -0.08 -0.73 9.70 -39.60 -0.38 -1.11 16 6 C -0.12 -1.07 5.88 -104.60 -0.62 -1.69 16 7 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 8 C -0.08 -0.81 8.88 -39.60 -0.35 -1.16 16 9 C -0.11 -1.33 5.07 -104.47 -0.53 -1.86 16 10 C 0.19 2.65 2.51 -69.08 -0.17 2.47 16 11 H 0.10 1.64 7.13 -51.93 -0.37 1.27 16 12 C -0.15 -1.97 9.47 37.16 0.35 -1.62 16 13 N -0.74 -10.70 5.00 -54.93 -0.27 -10.98 16 14 C 0.51 9.70 7.79 -10.99 -0.09 9.61 16 15 O -0.54 -12.33 15.64 5.55 0.09 -12.25 16 16 C -0.12 -2.44 5.64 -27.88 -0.16 -2.59 16 17 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 18 C -0.52 -15.21 9.66 -34.44 -0.33 -15.55 16 19 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 22 Si 0.88 22.95 27.47 -169.99 -4.67 18.28 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.13 0.88 6.30 -52.48 -0.33 0.55 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.13 1.13 6.07 -52.49 -0.32 0.81 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.40 4.58 6.21 -40.82 -0.25 4.32 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 41 H 0.02 0.63 7.16 -51.92 -0.37 0.26 16 42 H 0.02 0.51 7.53 -51.93 -0.39 0.11 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -35.36 354.61 -7.30 -42.66 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.64 Total: -0.01 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -1.73 Total: -11.79 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.50 Total: -38.56 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.10 Total: -15.93 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.36 -7.30 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291009712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.729 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds