Wall clock time and date at job start Tue Mar 31 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00306 * 2 1 4 4 C 1.38752 * 120.05204 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94680 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05036 * 359.72376 * 5 4 3 7 7 C 1.50696 * 119.94284 * 180.29502 * 6 5 4 8 8 C 1.38244 * 120.11199 * 0.55704 * 6 5 4 9 9 C 1.38171 * 120.05436 * 359.44067 * 8 6 5 10 10 C 1.50699 * 120.02521 * 180.30143 * 9 8 6 11 11 H 1.09000 * 109.46874 * 145.00502 * 10 9 8 12 12 C 1.53003 * 109.47230 * 265.00014 * 10 9 8 13 13 N 1.46496 * 109.47430 * 25.00555 * 10 9 8 14 14 C 1.34773 * 120.00398 * 154.99936 * 13 10 9 15 15 O 1.21285 * 119.99551 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00270 * 179.97438 * 14 13 10 17 17 C 1.52998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47052 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00407 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99962 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99683 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00019 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46982 * 89.99933 * 22 20 18 24 24 H 1.48496 * 109.47084 * 210.00143 * 22 20 18 25 25 H 1.48500 * 109.47199 * 330.00149 * 22 20 18 26 26 H 1.09002 * 109.47042 * 299.99603 * 1 2 3 27 27 H 1.08996 * 109.47358 * 60.00240 * 1 2 3 28 28 H 1.09000 * 109.47471 * 180.02562 * 1 2 3 29 29 H 1.08006 * 120.02878 * 0.04060 * 4 3 2 30 30 H 1.07994 * 119.97734 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47547 * 270.25093 * 7 6 5 32 32 H 1.08996 * 109.47057 * 30.25908 * 7 6 5 33 33 H 1.09005 * 109.46844 * 150.25442 * 7 6 5 34 34 H 1.08002 * 119.97539 * 179.72689 * 8 6 5 35 35 H 1.09000 * 109.46794 * 60.00438 * 12 10 9 36 36 H 1.08998 * 109.47218 * 180.02562 * 12 10 9 37 37 H 1.09006 * 109.47087 * 300.00630 * 12 10 9 38 38 H 0.97003 * 119.99623 * 334.99517 * 13 10 9 39 39 H 1.09000 * 109.46495 * 299.99399 * 16 14 13 40 40 H 1.09000 * 109.47007 * 59.99885 * 16 14 13 41 41 H 1.09010 * 109.46897 * 299.99544 * 17 16 14 42 42 H 1.08999 * 109.47349 * 59.99414 * 17 16 14 43 43 H 0.97003 * 119.99504 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6757 0.0047 7 6 3.9861 5.0184 0.0108 8 6 4.0560 2.5171 -0.0006 9 6 3.4311 1.2848 0.0000 10 6 4.2537 0.0221 0.0010 11 1 3.7465 -0.7415 0.5907 12 6 4.4273 -0.4748 -1.4356 13 7 5.5689 0.2966 0.5851 14 6 6.2758 -0.7008 1.1525 15 8 5.8228 -1.8256 1.1800 16 6 7.6289 -0.4186 1.7528 17 6 8.2128 -1.7119 2.3249 18 6 9.5663 -1.4297 2.9247 19 1 9.9698 -0.4283 2.8999 20 6 10.2894 -2.4502 3.5051 21 7 11.4703 -2.2039 4.0289 22 14 9.5912 -4.1823 3.5486 23 1 10.0093 -4.9153 2.3266 24 1 10.1006 -4.8912 4.7498 25 1 8.1087 -4.1171 3.6037 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.2128 2.3203 -0.0003 30 1 1.3340 4.5113 -0.0011 31 1 4.1512 5.3469 -1.0154 32 1 3.3580 5.7438 0.5279 33 1 4.9440 4.9358 0.5244 34 1 5.1344 2.5751 -0.0005 35 1 4.9345 0.2888 -2.0253 36 1 5.0219 -1.3883 -1.4348 37 1 3.4487 -0.6790 -1.8702 38 1 5.9310 1.1962 0.5634 39 1 8.2943 -0.0297 0.9820 40 1 7.5263 0.3179 2.5498 41 1 7.5475 -2.1012 3.0956 42 1 8.3154 -2.4481 1.5277 43 1 11.9792 -2.9219 4.4368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291009712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:47 Heat of formation + Delta-G solvation = -87.418434 kcal Electronic energy + Delta-G solvation = -22891.180398 eV Core-core repulsion = 19514.233689 eV Total energy + Delta-G solvation = -3376.946708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60410 -40.56354 -38.69937 -36.80695 -35.51873 -33.59010 -32.97536 -32.19852 -30.50973 -28.75860 -27.97007 -26.76587 -25.05414 -23.60209 -22.43974 -21.42178 -21.03754 -19.36460 -18.91205 -17.79078 -17.42372 -16.83580 -16.71085 -16.46655 -16.19966 -15.66070 -15.36776 -14.97243 -14.86857 -14.71542 -14.66267 -14.40188 -14.37835 -13.81711 -13.39679 -13.30939 -13.00474 -12.96657 -12.90207 -12.72036 -12.59480 -12.13908 -12.10663 -11.96633 -11.76660 -11.73977 -11.61903 -11.39604 -10.78069 -10.77441 -10.21579 -9.84003 -8.96238 -8.31356 -6.33889 0.29710 0.42576 1.33123 1.34925 1.50593 1.68807 2.19730 2.35348 2.38575 2.72129 3.04367 3.52687 3.82796 3.96587 3.98119 4.16356 4.25681 4.29489 4.38761 4.39115 4.40661 4.45279 4.50410 4.56088 4.70129 4.72243 4.76809 4.87040 4.92461 5.00697 5.05636 5.16343 5.21829 5.30300 5.34422 5.35870 5.44940 5.57254 5.61501 5.68345 5.85345 6.23945 6.43089 6.57270 6.72271 7.30027 7.31484 8.84313 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.003336 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.409169 B = 8390.025517 C = 9293.121662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.114 3.886 4 C -0.201 4.201 5 C -0.083 4.083 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.087 4.087 9 C -0.133 4.133 10 C 0.194 3.806 11 H 0.067 0.933 12 C -0.145 4.145 13 N -0.716 5.716 14 C 0.515 3.485 15 O -0.584 6.584 16 C -0.116 4.116 17 C 0.005 3.995 18 C -0.528 4.528 19 H 0.052 0.948 20 C 0.014 3.986 21 N -0.943 5.943 22 Si 0.937 3.063 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.263 1.263 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.412 0.588 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.103 15.504 -12.320 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.068 3.932 4 C -0.220 4.220 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.167 4.167 8 C -0.106 4.106 9 C -0.134 4.134 10 C 0.089 3.911 11 H 0.085 0.915 12 C -0.203 4.203 13 N -0.371 5.371 14 C 0.304 3.696 15 O -0.464 6.464 16 C -0.156 4.156 17 C -0.033 4.033 18 C -0.566 4.566 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.584 5.584 22 Si 0.762 3.238 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.188 1.188 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.129 0.871 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.251 0.749 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.208 14.439 -12.212 31.513 hybrid contribution 0.077 -0.660 0.296 0.727 sum -25.131 13.779 -11.916 31.039 Atomic orbital electron populations 1.23320 0.76518 1.05289 1.02383 1.86094 1.23422 1.27068 1.88619 1.18932 0.91443 0.85233 0.97601 1.21467 1.01073 0.91649 1.07805 1.21199 0.94088 0.97759 0.97073 1.20113 0.94054 0.96014 1.02063 1.20789 1.00643 0.92149 1.03083 1.20823 1.00443 0.90409 0.98882 1.19230 0.91088 0.94984 1.08088 1.19400 0.82320 0.94410 0.94941 0.91484 1.22019 1.02429 1.01009 0.94883 1.46146 1.19032 1.12293 1.59608 1.21253 0.87448 0.84338 0.76565 1.90636 1.71952 1.24199 1.59576 1.21509 0.91669 1.00623 1.01771 1.19220 0.94235 0.94328 0.95498 1.21427 1.01885 0.96379 1.36924 0.93000 1.25786 0.94938 1.03064 0.94556 1.70020 1.13534 1.34399 1.40411 0.85845 0.79533 0.80254 0.78183 1.19321 1.20253 1.18792 0.91735 0.91100 0.87134 0.83132 0.83135 0.90362 0.90430 0.91160 0.84341 0.91020 0.93833 0.90954 0.74891 0.87660 0.87940 0.97334 0.97287 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.49 9.63 -92.41 -0.89 -8.38 16 3 C 0.11 2.45 6.66 22.50 0.15 2.60 16 4 C -0.20 -3.22 9.04 22.37 0.20 -3.02 16 5 C -0.08 -1.17 9.70 22.26 0.22 -0.96 16 6 C -0.12 -1.89 5.88 -19.85 -0.12 -2.00 16 7 C -0.11 -1.14 10.01 71.23 0.71 -0.43 16 8 C -0.09 -1.63 8.88 22.26 0.20 -1.44 16 9 C -0.13 -3.06 5.07 -19.77 -0.10 -3.16 16 10 C 0.19 5.41 2.51 44.25 0.11 5.52 16 11 H 0.07 2.32 7.13 -2.39 -0.02 2.30 16 12 C -0.15 -3.73 9.47 71.98 0.68 -3.05 16 13 N -0.72 -20.27 5.00 -446.10 -2.23 -22.50 16 14 C 0.52 19.48 7.79 87.66 0.68 20.16 16 15 O -0.58 -27.28 15.64 -3.05 -0.05 -27.32 16 16 C -0.12 -4.53 5.64 29.85 0.17 -4.37 16 17 C 0.01 0.26 3.33 29.85 0.10 0.36 16 18 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 19 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 20 C 0.01 0.86 5.47 84.66 0.46 1.32 16 21 N -0.94 -59.65 13.96 21.45 0.30 -59.35 16 22 Si 0.94 47.67 27.47 68.60 1.88 49.56 16 23 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.26 -13.44 6.54 99.48 0.65 -12.79 16 26 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 27 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.15 1.61 6.30 -2.91 -0.02 1.59 16 30 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.07 0.71 8.08 -2.38 -0.02 0.69 16 34 H 0.14 2.14 6.07 -2.91 -0.02 2.13 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 38 H 0.41 8.86 6.21 -92.71 -0.58 8.28 16 39 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 41 H 0.01 0.45 7.16 -2.38 -0.02 0.43 16 42 H 0.01 0.46 7.53 -2.39 -0.02 0.45 16 43 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -77.35 354.61 4.22 -73.13 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.37 Total: 12.68 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.83 Total: -17.82 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.93 Total: -81.85 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.94 Total: -35.70 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.88 Total: 49.56 kcal Total: -77.35 4.22 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291009712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.287 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds