Wall clock time and date at job start Tue Mar 31 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99788 * 2 1 4 4 C 1.38762 * 120.05769 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94722 * 179.72255 * 4 3 2 6 6 C 1.38289 * 120.05606 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94570 * 180.02562 * 6 5 4 8 8 C 1.38241 * 120.11016 * 0.02602 * 6 5 4 9 9 C 1.38169 * 120.05790 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02678 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.46809 * 212.76833 * 10 9 8 12 12 C 1.52998 * 109.46987 * 92.77216 * 10 9 8 13 13 N 1.46503 * 109.47617 * 332.76747 * 10 9 8 14 14 C 1.34773 * 120.00108 * 207.19007 * 13 10 9 15 15 O 1.21281 * 120.00004 * 0.02562 * 14 13 10 16 16 C 1.50702 * 119.99754 * 179.97438 * 14 13 10 17 17 C 1.53005 * 109.46680 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46680 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00323 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99772 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00254 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47366 * 60.00077 * 22 20 18 24 24 H 1.48496 * 109.47237 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47122 * 300.00585 * 22 20 18 26 26 H 1.08995 * 109.46897 * 299.99491 * 1 2 3 27 27 H 1.08994 * 109.47562 * 59.99797 * 1 2 3 28 28 H 1.08997 * 109.46714 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.02100 * 359.74581 * 4 3 2 30 30 H 1.08002 * 119.97658 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.46632 * 90.00092 * 7 6 5 32 32 H 1.08995 * 109.47079 * 210.00205 * 7 6 5 33 33 H 1.08996 * 109.47063 * 330.00296 * 7 6 5 34 34 H 1.08003 * 119.96906 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.47428 * 59.99687 * 12 10 9 36 36 H 1.09001 * 109.47250 * 179.97438 * 12 10 9 37 37 H 1.09006 * 109.47033 * 299.99479 * 12 10 9 38 38 H 0.96996 * 119.99473 * 27.19091 * 13 10 9 39 39 H 1.08993 * 109.47639 * 300.00148 * 16 14 13 40 40 H 1.08997 * 109.46536 * 60.00550 * 16 14 13 41 41 H 1.08993 * 109.47434 * 300.00553 * 17 16 14 42 42 H 1.09004 * 109.46926 * 60.00678 * 17 16 14 43 43 H 0.96999 * 120.00204 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9207 3.6048 0.0063 6 6 3.3017 3.6759 0.0121 7 6 3.9859 5.0187 0.0190 8 6 4.0558 2.5173 0.0116 9 6 3.4310 1.2849 0.0058 10 6 4.2538 0.0223 0.0058 11 1 3.7303 -0.7524 -0.5546 12 6 4.4679 -0.4468 1.4463 13 7 5.5519 0.2852 -0.6203 14 6 6.2224 -0.7143 -1.2267 15 8 5.7508 -1.8314 -1.2546 16 6 7.5575 -0.4437 -1.8712 17 6 8.1003 -1.7372 -2.4821 18 6 9.4351 -1.4664 -3.1272 19 1 9.8545 -0.4715 -3.1034 20 6 10.1210 -2.4890 -3.7477 21 7 9.6101 -3.7005 -3.7771 22 14 11.7758 -2.1536 -4.5467 23 1 12.7276 -1.6530 -3.5226 24 1 12.3021 -3.4086 -5.1408 25 1 11.6131 -1.1321 -5.6123 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 0.2127 2.3203 -0.0032 30 1 1.3338 4.5114 0.0063 31 1 4.1466 5.3391 1.0483 32 1 4.9458 4.9400 -0.4912 33 1 3.3599 5.7480 -0.4950 34 1 5.1343 2.5754 0.0157 35 1 3.5020 -0.6425 1.9121 36 1 5.0626 -1.3603 1.4463 37 1 4.9913 0.3279 2.0067 38 1 5.9288 1.1787 -0.5983 39 1 7.4381 0.3059 -2.6534 40 1 8.2559 -0.0763 -1.1194 41 1 8.2197 -2.4865 -1.6996 42 1 7.4019 -2.1050 -3.2339 43 1 10.0925 -4.4198 -4.2140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291009714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:51 Heat of formation + Delta-G solvation = -67.547850 kcal Electronic energy + Delta-G solvation = -22825.238115 eV Core-core repulsion = 19449.153060 eV Total energy + Delta-G solvation = -3376.085055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69826 -39.08453 -37.88617 -35.52126 -33.38930 -32.31767 -31.52482 -30.69092 -29.36691 -28.11028 -26.13344 -25.70609 -23.96948 -22.39590 -21.29997 -20.32323 -19.57617 -18.24144 -16.94356 -16.54885 -16.02277 -15.89871 -15.44689 -14.83642 -14.76654 -14.52398 -14.35362 -14.00651 -13.99512 -13.60502 -13.33949 -12.99357 -12.53150 -12.39531 -12.28028 -12.15341 -11.98640 -11.89648 -11.78177 -11.24763 -11.10881 -11.07698 -10.87581 -10.73138 -10.57689 -9.89417 -9.60525 -9.15988 -9.09948 -8.92280 -8.73904 -8.27560 -8.18615 -5.91752 -3.96054 1.08064 1.18750 3.07098 3.34294 3.37280 3.41473 3.43020 3.45646 3.64784 4.43189 4.51071 4.55431 4.64340 4.77768 4.89723 5.02047 5.10093 5.16757 5.25796 5.36610 5.39761 5.41278 5.42907 5.46825 5.63960 5.69557 5.79588 5.85734 5.94448 6.08143 6.24549 6.28426 6.31799 6.35306 6.37615 6.55100 6.87805 6.95760 7.17497 7.78911 7.92401 7.97460 8.12537 8.43727 8.87486 9.12731 9.67076 11.19194 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.003131 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.764023 B = 8941.428914 C = 9791.281982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.131 3.869 4 C -0.202 4.202 5 C -0.085 4.085 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.078 4.078 9 C -0.110 4.110 10 C 0.189 3.811 11 H 0.101 0.899 12 C -0.152 4.152 13 N -0.740 5.740 14 C 0.511 3.489 15 O -0.533 6.533 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.394 0.606 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.665 16.953 10.888 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.085 3.915 4 C -0.221 4.221 5 C -0.103 4.103 6 C -0.120 4.120 7 C -0.167 4.167 8 C -0.097 4.097 9 C -0.112 4.112 10 C 0.084 3.916 11 H 0.118 0.882 12 C -0.211 4.211 13 N -0.396 5.396 14 C 0.299 3.701 15 O -0.408 6.408 16 C -0.170 4.170 17 C 0.000 4.000 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.146 0.854 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.229 0.771 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.884 15.722 10.790 26.837 hybrid contribution 0.707 0.764 -0.438 1.130 sum -18.177 16.486 10.352 26.634 Atomic orbital electron populations 1.23064 0.78459 1.04115 1.01118 1.86138 1.21236 1.26516 1.88432 1.18735 0.91426 0.84455 0.96909 1.21177 0.99908 0.92200 1.08766 1.20789 0.93923 0.96933 0.98670 1.19787 0.93604 0.95438 1.03132 1.20731 1.00489 0.93276 1.02187 1.20652 0.99734 0.90544 0.98733 1.19373 0.90753 0.95678 1.05354 1.19493 0.83659 0.93809 0.94655 0.88153 1.22103 1.02053 1.01791 0.95144 1.46414 1.20927 1.12923 1.59299 1.21547 0.87459 0.84173 0.76885 1.90665 1.69022 1.22711 1.58374 1.21868 0.91186 1.04056 0.99901 1.18890 0.95096 0.89906 0.96124 1.21199 1.04181 0.95303 1.35872 0.92678 1.25024 0.97898 0.95131 0.96331 1.69987 1.38492 1.00642 1.43733 0.86656 0.84198 0.77451 0.79636 1.20266 1.21310 1.20271 0.92752 0.92706 0.88102 0.85399 0.85888 0.91381 0.91385 0.91727 0.85356 0.91881 0.91491 0.92711 0.77090 0.90311 0.90290 0.95804 0.95823 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.67 9.59 -19.42 -0.19 -3.86 16 3 C 0.13 1.55 6.66 -39.21 -0.26 1.29 16 4 C -0.20 -1.94 9.04 -39.43 -0.36 -2.29 16 5 C -0.09 -0.76 9.69 -39.61 -0.38 -1.14 16 6 C -0.12 -1.12 5.88 -104.60 -0.62 -1.74 16 7 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 8 C -0.08 -0.84 8.88 -39.61 -0.35 -1.19 16 9 C -0.11 -1.38 5.06 -104.48 -0.53 -1.91 16 10 C 0.19 2.76 2.56 -69.08 -0.18 2.59 16 11 H 0.10 1.75 6.99 -51.93 -0.36 1.39 16 12 C -0.15 -2.06 9.49 37.16 0.35 -1.70 16 13 N -0.74 -11.32 4.98 -54.93 -0.27 -11.59 16 14 C 0.51 10.28 7.81 -10.99 -0.09 10.20 16 15 O -0.53 -13.03 15.61 5.56 0.09 -12.94 16 16 C -0.13 -2.72 5.64 -27.88 -0.16 -2.88 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.21 9.11 -34.44 -0.31 -15.53 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 22 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 30 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.13 1.18 6.17 -52.48 -0.32 0.85 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.39 4.81 6.31 -40.82 -0.26 4.55 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -35.41 358.24 -7.68 -43.09 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.67 Total: 1.09 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.74 Total: -11.00 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.46 Total: -38.69 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.10 Total: -16.80 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.41 -7.68 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291009714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.458 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds