Wall clock time and date at job start Tue Mar 31 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99788 * 2 1 4 4 C 1.38762 * 120.05769 * 0.02562 * 3 2 1 5 5 C 1.38115 * 119.94722 * 179.72255 * 4 3 2 6 6 C 1.38289 * 120.05606 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94570 * 180.02562 * 6 5 4 8 8 C 1.38241 * 120.11016 * 0.02602 * 6 5 4 9 9 C 1.38169 * 120.05790 * 359.97438 * 8 6 5 10 10 C 1.50697 * 120.02678 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.46809 * 212.76833 * 10 9 8 12 12 C 1.52998 * 109.46987 * 92.77216 * 10 9 8 13 13 N 1.46503 * 109.47617 * 332.76747 * 10 9 8 14 14 C 1.34773 * 120.00108 * 207.19007 * 13 10 9 15 15 O 1.21281 * 120.00004 * 0.02562 * 14 13 10 16 16 C 1.50702 * 119.99754 * 179.97438 * 14 13 10 17 17 C 1.53005 * 109.46680 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46680 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00323 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99772 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00254 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99902 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47366 * 60.00077 * 22 20 18 24 24 H 1.48496 * 109.47237 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47122 * 300.00585 * 22 20 18 26 26 H 1.08995 * 109.46897 * 299.99491 * 1 2 3 27 27 H 1.08994 * 109.47562 * 59.99797 * 1 2 3 28 28 H 1.08997 * 109.46714 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.02100 * 359.74581 * 4 3 2 30 30 H 1.08002 * 119.97658 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.46632 * 90.00092 * 7 6 5 32 32 H 1.08995 * 109.47079 * 210.00205 * 7 6 5 33 33 H 1.08996 * 109.47063 * 330.00296 * 7 6 5 34 34 H 1.08003 * 119.96906 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.47428 * 59.99687 * 12 10 9 36 36 H 1.09001 * 109.47250 * 179.97438 * 12 10 9 37 37 H 1.09006 * 109.47033 * 299.99479 * 12 10 9 38 38 H 0.96996 * 119.99473 * 27.19091 * 13 10 9 39 39 H 1.08993 * 109.47639 * 300.00148 * 16 14 13 40 40 H 1.08997 * 109.46536 * 60.00550 * 16 14 13 41 41 H 1.08993 * 109.47434 * 300.00553 * 17 16 14 42 42 H 1.09004 * 109.46926 * 60.00678 * 17 16 14 43 43 H 0.96999 * 120.00204 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3754 0.0005 5 6 1.9207 3.6048 0.0063 6 6 3.3017 3.6759 0.0121 7 6 3.9859 5.0187 0.0190 8 6 4.0558 2.5173 0.0116 9 6 3.4310 1.2849 0.0058 10 6 4.2538 0.0223 0.0058 11 1 3.7303 -0.7524 -0.5546 12 6 4.4679 -0.4468 1.4463 13 7 5.5519 0.2852 -0.6203 14 6 6.2224 -0.7143 -1.2267 15 8 5.7508 -1.8314 -1.2546 16 6 7.5575 -0.4437 -1.8712 17 6 8.1003 -1.7372 -2.4821 18 6 9.4351 -1.4664 -3.1272 19 1 9.8545 -0.4715 -3.1034 20 6 10.1210 -2.4890 -3.7477 21 7 9.6101 -3.7005 -3.7771 22 14 11.7758 -2.1536 -4.5467 23 1 12.7276 -1.6530 -3.5226 24 1 12.3021 -3.4086 -5.1408 25 1 11.6131 -1.1321 -5.6123 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 0.2127 2.3203 -0.0032 30 1 1.3338 4.5114 0.0063 31 1 4.1466 5.3391 1.0483 32 1 4.9458 4.9400 -0.4912 33 1 3.3599 5.7480 -0.4950 34 1 5.1343 2.5754 0.0157 35 1 3.5020 -0.6425 1.9121 36 1 5.0626 -1.3603 1.4463 37 1 4.9913 0.3279 2.0067 38 1 5.9288 1.1787 -0.5983 39 1 7.4381 0.3059 -2.6534 40 1 8.2559 -0.0763 -1.1194 41 1 8.2197 -2.4865 -1.6996 42 1 7.4019 -2.1050 -3.2339 43 1 10.0925 -4.4198 -4.2140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291009714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:50 Heat of formation + Delta-G solvation = -90.801180 kcal Electronic energy + Delta-G solvation = -22826.246455 eV Core-core repulsion = 19449.153060 eV Total energy + Delta-G solvation = -3377.093395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59242 -40.53992 -38.69708 -36.79097 -35.53386 -33.48665 -32.81549 -32.11133 -30.46303 -28.74626 -27.70161 -26.76347 -25.11784 -23.84226 -22.54740 -21.42583 -21.03439 -19.17416 -18.70428 -17.69967 -17.39194 -16.82502 -16.70476 -16.48060 -16.33784 -15.64278 -15.33664 -14.93886 -14.83027 -14.69144 -14.40337 -14.37920 -14.17700 -13.75928 -13.31556 -13.21801 -12.99931 -12.95780 -12.77636 -12.71595 -12.59531 -12.49817 -12.12751 -11.90203 -11.74091 -11.66885 -11.58721 -11.31319 -10.73934 -10.55453 -10.19299 -9.83991 -8.96011 -8.16715 -6.31164 0.30190 0.43044 1.42603 1.47606 1.55265 1.72025 2.20773 2.39057 2.45527 2.72970 3.15966 3.53567 3.83680 3.98300 4.01577 4.17102 4.26181 4.29656 4.38606 4.40673 4.43973 4.50955 4.56659 4.57052 4.70361 4.71657 4.76994 4.88021 4.93645 5.05847 5.07871 5.16277 5.23129 5.32625 5.35000 5.49674 5.58394 5.64003 5.68608 5.86230 5.86613 6.18474 6.43791 6.60119 6.87093 7.34608 7.39153 8.95916 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.003131 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.764023 B = 8941.428914 C = 9791.281982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.112 3.888 4 C -0.202 4.202 5 C -0.083 4.083 6 C -0.122 4.122 7 C -0.109 4.109 8 C -0.086 4.086 9 C -0.133 4.133 10 C 0.192 3.808 11 H 0.063 0.937 12 C -0.145 4.145 13 N -0.715 5.715 14 C 0.512 3.488 15 O -0.587 6.587 16 C -0.118 4.118 17 C 0.043 3.957 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.976 3.024 23 H -0.261 1.261 24 H -0.288 1.288 25 H -0.262 1.262 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.104 0.896 40 H 0.107 0.893 41 H -0.018 1.018 42 H -0.020 1.020 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 20.809 11.221 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.067 3.933 4 C -0.220 4.220 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.166 4.166 8 C -0.104 4.104 9 C -0.135 4.135 10 C 0.088 3.912 11 H 0.082 0.918 12 C -0.203 4.203 13 N -0.370 5.370 14 C 0.301 3.699 15 O -0.467 6.467 16 C -0.158 4.158 17 C 0.005 3.995 18 C -0.582 4.582 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.799 3.201 23 H -0.186 1.186 24 H -0.214 1.214 25 H -0.186 1.186 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.001 0.999 42 H -0.001 1.001 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.698 19.658 11.150 29.332 hybrid contribution 0.510 -0.399 -0.507 0.822 sum -18.188 19.259 10.643 28.548 Atomic orbital electron populations 1.23319 0.76504 1.05258 1.02413 1.86103 1.23466 1.27194 1.88631 1.18967 0.91503 0.85234 0.97623 1.21464 1.01053 0.91639 1.07852 1.21203 0.94130 0.97703 0.97037 1.20122 0.94025 0.96039 1.02042 1.20785 1.00654 0.92026 1.03109 1.20827 1.00497 0.90309 0.98771 1.19247 0.91077 0.95010 1.08125 1.19395 0.82889 0.94570 0.94384 0.91837 1.22019 1.02346 1.01069 0.94853 1.46115 1.20763 1.12685 1.57397 1.21401 0.87429 0.84136 0.76974 1.90652 1.70215 1.25100 1.60713 1.21649 0.91986 1.01006 1.01162 1.18682 0.94656 0.92129 0.94042 1.21695 1.04519 0.96349 1.35632 0.90471 1.26166 1.02730 0.94681 0.96956 1.70179 1.40689 1.02035 1.44947 0.85350 0.78349 0.77496 0.78904 1.18583 1.21373 1.18648 0.91000 0.91715 0.87232 0.83147 0.83041 0.90328 0.91072 0.90419 0.84233 0.90962 0.94142 0.90717 0.74860 0.87764 0.87489 0.99930 1.00114 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.19 9.59 -92.39 -0.89 -9.07 16 3 C 0.11 2.59 6.66 22.51 0.15 2.74 16 4 C -0.20 -3.42 9.04 22.37 0.20 -3.22 16 5 C -0.08 -1.21 9.69 22.25 0.22 -1.00 16 6 C -0.12 -1.93 5.88 -19.85 -0.12 -2.05 16 7 C -0.11 -1.12 10.01 71.24 0.71 -0.41 16 8 C -0.09 -1.67 8.88 22.25 0.20 -1.47 16 9 C -0.13 -3.27 5.06 -19.77 -0.10 -3.37 16 10 C 0.19 5.79 2.56 44.24 0.11 5.91 16 11 H 0.06 2.40 6.99 -2.38 -0.02 2.38 16 12 C -0.14 -3.99 9.49 71.98 0.68 -3.31 16 13 N -0.71 -21.82 4.98 -446.09 -2.22 -24.04 16 14 C 0.51 21.23 7.81 87.66 0.69 21.92 16 15 O -0.59 -30.71 15.61 -3.03 -0.05 -30.76 16 16 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 17 C 0.04 2.44 4.26 29.85 0.13 2.57 16 18 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 19 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 20 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 21 N -0.94 -60.71 13.29 21.45 0.28 -60.42 16 22 Si 0.98 44.87 29.54 68.60 2.03 46.90 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 26 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 27 H 0.06 0.75 7.66 -2.39 -0.02 0.74 16 28 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.15 1.75 6.30 -2.91 -0.02 1.73 16 30 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 33 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 34 H 0.14 2.22 6.17 -2.91 -0.02 2.20 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.41 9.40 6.31 -92.71 -0.59 8.82 16 39 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 42 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 43 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -81.69 358.24 4.42 -77.27 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.42 Total: 16.55 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.85 Total: -16.43 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.94 Total: -84.46 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.93 Total: -39.83 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -81.69 4.42 -77.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291009714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.534 kcal (2) G-P(sol) polarization free energy of solvation -81.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds