Wall clock time and date at job start Tue Mar 31 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38243 * 120.00297 * 2 1 4 4 C 1.38230 * 120.00092 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99865 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00326 * 359.97438 * 4 3 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 4 3 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.46811 * 340.00330 * 8 7 6 10 10 O 1.42903 * 109.47178 * 220.00200 * 8 7 6 11 11 C 1.52997 * 109.46856 * 100.00429 * 8 7 6 12 12 N 1.46504 * 109.47189 * 185.00552 * 11 8 7 13 13 C 1.34771 * 120.00122 * 180.02562 * 12 11 8 14 14 O 1.21275 * 120.00219 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99793 * 179.97438 * 13 12 11 16 16 C 1.53006 * 109.46745 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.46745 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99758 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00110 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99743 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00049 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47642 * 90.00096 * 21 19 17 23 23 H 1.48506 * 109.46886 * 209.99515 * 21 19 17 24 24 H 1.48502 * 109.47270 * 329.99435 * 21 19 17 25 25 C 1.38234 * 120.00085 * 179.97438 * 2 1 3 26 26 H 1.08994 * 109.47298 * 89.99386 * 1 2 3 27 27 H 1.09003 * 109.47259 * 209.99855 * 1 2 3 28 28 H 1.09009 * 109.46811 * 329.99497 * 1 2 3 29 29 H 1.08001 * 119.99557 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.46961 * 269.97678 * 5 4 3 31 31 H 1.08993 * 109.47341 * 29.98207 * 5 4 3 32 32 H 1.09001 * 109.46864 * 149.98291 * 5 4 3 33 33 H 1.08000 * 120.00616 * 179.72578 * 6 4 3 34 34 H 0.96697 * 114.00023 * 300.00041 * 10 8 7 35 35 H 1.09003 * 109.47187 * 304.99908 * 11 8 7 36 36 H 1.09000 * 109.47619 * 65.00052 * 11 8 7 37 37 H 0.96999 * 119.99805 * 359.97438 * 12 11 8 38 38 H 1.08996 * 109.47062 * 299.99335 * 15 13 12 39 39 H 1.08998 * 109.47238 * 59.99995 * 15 13 12 40 40 H 1.08996 * 109.46911 * 299.99567 * 16 15 13 41 41 H 1.08998 * 109.47143 * 60.00076 * 16 15 13 42 42 H 0.96998 * 119.99734 * 180.02562 * 20 19 17 43 43 H 1.08005 * 119.99822 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0011 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0027 8 6 4.3340 -2.5023 0.0033 9 1 5.3519 -2.3343 -0.3487 10 8 3.6780 -3.4314 -0.8619 11 6 4.3725 -3.0683 1.4242 12 7 5.2050 -4.2736 1.4474 13 6 5.3841 -4.9467 2.6012 14 8 4.8565 -4.5545 3.6203 15 6 6.2400 -6.1869 2.6249 16 6 6.2785 -6.7528 4.0459 17 6 7.1339 -7.9933 4.0695 18 1 7.6034 -8.3428 3.1618 19 6 7.3172 -8.6820 5.2498 20 7 6.7458 -8.2561 6.3551 21 14 8.3780 -10.2192 5.2791 22 1 9.7853 -9.8441 5.5687 23 1 7.8845 -11.1411 6.3336 24 1 8.3074 -10.8947 3.9585 25 6 2.1981 -1.1971 0.0005 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6582 2.1325 -0.0004 30 1 4.5164 2.8169 -1.0264 31 1 3.7447 3.2618 0.5146 32 1 5.2861 2.3718 0.5156 33 1 5.3517 -0.0001 -0.0025 34 1 2.7659 -3.6284 -0.6084 35 1 4.7923 -2.3237 2.1006 36 1 3.3608 -3.3192 1.7429 37 1 5.6266 -4.5875 0.6322 38 1 5.8200 -6.9311 1.9483 39 1 7.2518 -5.9362 2.3064 40 1 6.6988 -6.0083 4.7221 41 1 5.2668 -7.0034 4.3648 42 1 6.8750 -8.7404 7.1855 43 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291465833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:57 Heat of formation + Delta-G solvation = -92.703380 kcal Electronic energy + Delta-G solvation = -22116.717619 eV Core-core repulsion = 18739.541738 eV Total energy + Delta-G solvation = -3377.175881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30726 -39.08928 -37.46888 -34.11250 -33.81865 -33.41530 -32.65876 -31.00056 -28.71240 -27.53486 -27.03267 -25.64972 -23.67767 -21.47521 -21.23636 -20.86057 -19.52320 -17.49828 -16.91453 -16.49005 -16.36974 -15.68345 -15.30245 -15.16050 -14.52364 -14.42189 -14.41072 -14.30961 -13.74072 -13.55157 -13.26545 -13.04080 -12.91788 -12.87426 -12.33892 -12.24712 -12.14245 -11.90126 -11.75994 -11.40845 -11.19910 -11.13411 -10.91005 -10.59733 -10.43346 -9.92930 -9.64211 -9.17488 -9.04393 -8.88927 -8.86848 -8.77338 -8.29950 -5.94141 -3.98395 0.99318 1.05588 3.27531 3.29412 3.34851 3.40705 3.43495 3.56321 4.14058 4.35866 4.41206 4.45034 4.49953 4.68830 4.78854 4.89711 5.01149 5.01336 5.19510 5.21806 5.25434 5.29342 5.40731 5.46296 5.52188 5.54052 5.65273 5.78343 5.85178 5.88875 6.20707 6.21893 6.26596 6.28545 6.30238 6.68090 6.71641 6.92758 7.27678 7.76700 7.88881 7.92112 8.09557 8.41121 8.80795 9.10366 9.64994 11.16882 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.002397 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.627350 B =11680.201791 C =11793.506253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.105 4.105 8 C 0.139 3.861 9 H 0.114 0.886 10 O -0.550 6.550 11 C 0.094 3.906 12 N -0.740 5.740 13 C 0.509 3.491 14 O -0.536 6.536 15 C -0.129 4.129 16 C 0.037 3.963 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.376 0.624 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 20.553 -17.593 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.131 4.131 7 C -0.106 4.106 8 C 0.080 3.920 9 H 0.132 0.868 10 O -0.356 6.356 11 C -0.030 4.030 12 N -0.395 5.395 13 C 0.298 3.702 14 O -0.412 6.412 15 C -0.169 4.169 16 C -0.001 4.001 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.133 4.133 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.225 0.775 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.368 20.806 -16.933 28.414 hybrid contribution 0.223 -0.903 0.034 0.931 sum -9.145 19.902 -16.899 27.665 Atomic orbital electron populations 1.20807 0.91003 1.03017 1.02390 1.19864 0.96131 0.92927 0.99010 1.20935 0.93532 0.97576 1.01801 1.19894 0.93831 0.95297 0.99063 1.20804 1.00055 0.93944 1.02378 1.20863 0.99828 0.91256 1.01137 1.20345 0.94284 0.95379 1.00589 1.21050 0.96444 0.84952 0.89591 0.86837 1.86621 1.31099 1.63744 1.54178 1.21898 0.96584 0.88485 0.96062 1.46116 1.52980 1.28157 1.12206 1.21592 0.81071 0.85417 0.82164 1.90668 1.48961 1.68457 1.33097 1.21861 0.97952 0.92664 1.04456 1.18901 0.97913 0.95249 0.88021 1.21235 1.30417 1.10084 0.94730 0.92581 1.25033 0.95987 0.97728 0.95708 1.70003 1.43645 1.39825 0.99431 0.86583 0.80571 0.83037 0.77709 1.20682 1.21238 1.19879 1.20736 0.93322 0.97777 1.01452 0.91084 0.91313 0.91479 0.86097 0.91107 0.91488 0.91319 0.85800 0.77541 0.90819 0.91452 0.76471 0.90184 0.90237 0.95853 0.95847 0.92973 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.08 -0.68 5.88 -104.62 -0.62 -1.30 16 3 C -0.12 -1.02 9.36 -39.58 -0.37 -1.39 16 4 C -0.08 -0.70 5.88 -104.63 -0.62 -1.31 16 5 C -0.12 -0.72 10.01 36.01 0.36 -0.36 16 6 C -0.11 -1.04 9.33 -39.58 -0.37 -1.41 16 7 C -0.11 -1.02 4.97 -104.62 -0.52 -1.54 16 8 C 0.14 1.35 3.24 -27.88 -0.09 1.26 16 9 H 0.11 1.02 8.00 -51.93 -0.42 0.61 16 10 O -0.55 -5.44 13.13 -35.23 -0.46 -5.90 16 11 C 0.09 1.18 5.29 -4.04 -0.02 1.16 16 12 N -0.74 -10.62 5.50 -60.29 -0.33 -10.95 16 13 C 0.51 10.01 7.83 -10.99 -0.09 9.92 16 14 O -0.54 -12.92 15.98 5.56 0.09 -12.84 16 15 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 16 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 17 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 18 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.11 -1.05 8.98 -39.58 -0.36 -1.40 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.07 0.37 8.09 -51.92 -0.42 -0.05 16 29 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 34 H 0.38 2.77 7.50 45.56 0.34 3.12 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 4.77 8.47 -40.82 -0.35 4.42 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.12 0.89 6.79 -52.48 -0.36 0.54 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -35.64 364.31 -8.73 -44.37 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.22 Total: 2.55 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.01 Total: -12.56 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.40 Total: -37.97 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.37 Total: -18.74 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.64 -8.73 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291465833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.332 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds