Wall clock time and date at job start Tue Mar 31 2020 07:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47057 * 2 1 4 4 C 1.38230 * 120.00365 * 89.99644 * 3 2 1 5 5 C 1.38235 * 120.00326 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00196 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46818 * 25.00639 * 7 6 5 9 9 O 1.42899 * 109.46823 * 145.00426 * 7 6 5 10 10 C 1.52994 * 109.47165 * 265.00399 * 7 6 5 11 11 N 1.46505 * 109.47107 * 180.02562 * 10 7 6 12 12 C 1.34773 * 120.00199 * 180.02562 * 11 10 7 13 13 O 1.21284 * 119.99909 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00255 * 179.97438 * 12 11 10 15 15 C 1.52994 * 109.47163 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47165 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99718 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00239 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46921 * 59.99605 * 20 18 16 22 22 H 1.48495 * 109.46903 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46743 * 299.99516 * 20 18 16 24 24 C 1.38239 * 120.00062 * 0.02871 * 6 5 4 25 25 C 1.38234 * 119.99750 * 270.02378 * 3 2 1 26 26 H 1.08998 * 109.47200 * 60.00502 * 1 2 3 27 27 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47026 * 300.00180 * 1 2 3 29 29 H 1.08997 * 109.47026 * 239.99820 * 2 1 3 30 30 H 1.08998 * 109.47200 * 119.99498 * 2 1 3 31 31 H 1.08000 * 120.00356 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00616 * 179.70664 * 5 4 3 33 33 H 0.96693 * 114.00661 * 60.00513 * 9 7 6 34 34 H 1.09001 * 109.47449 * 299.99854 * 10 7 6 35 35 H 1.09004 * 109.47262 * 59.99654 * 10 7 6 36 36 H 0.97000 * 119.99873 * 359.97438 * 11 10 7 37 37 H 1.08997 * 109.46897 * 299.99413 * 14 12 11 38 38 H 1.09004 * 109.47310 * 59.99363 * 14 12 11 39 39 H 1.09001 * 109.47449 * 299.99859 * 15 14 12 40 40 H 1.09000 * 109.47514 * 60.00110 * 15 14 12 41 41 H 0.96999 * 120.00594 * 180.02562 * 19 18 16 42 42 H 1.08005 * 120.00103 * 179.97438 * 24 6 5 43 43 H 1.08000 * 120.00029 * 359.97337 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9533 4.0276 -0.0001 7 6 3.4546 5.4488 -0.0002 8 1 3.9847 5.6472 0.9313 9 8 4.3422 5.6407 -1.1036 10 6 2.2691 6.4077 -0.1266 11 7 2.7564 7.7893 -0.1273 12 6 1.8841 8.8115 -0.2292 13 8 0.6956 8.5877 -0.3208 14 6 2.3853 10.2327 -0.2294 15 6 1.1998 11.1916 -0.3559 16 6 1.7011 12.6128 -0.3567 17 1 2.7594 12.8121 -0.2747 18 6 0.8087 13.6586 -0.4610 19 7 -0.4800 13.4158 -0.5603 20 14 1.4300 15.4202 -0.4613 21 1 2.3521 15.6197 -1.6080 22 1 0.2794 16.3508 -0.5842 23 1 2.1524 15.6904 0.8077 24 6 2.7230 3.3759 -1.1973 25 6 2.2622 2.0725 -1.1972 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.0830 1.5634 2.1324 32 1 2.8984 3.8868 2.1323 33 1 3.9369 5.4811 -1.9668 34 1 1.7390 6.2093 -1.0582 35 1 1.5920 6.2612 0.7150 36 1 3.7069 7.9683 -0.0537 37 1 2.9156 10.4310 0.7020 38 1 3.0622 10.3792 -1.0711 39 1 0.6698 10.9932 -1.2875 40 1 0.5227 11.0453 0.4857 41 1 -1.1080 14.1515 -0.6341 42 1 2.9026 3.8851 -2.1327 43 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291522191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:20 Heat of formation + Delta-G solvation = -91.290015 kcal Electronic energy + Delta-G solvation = -21966.206413 eV Core-core repulsion = 18589.091820 eV Total energy + Delta-G solvation = -3377.114593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24504 -39.08188 -37.53632 -34.37016 -34.06068 -33.41511 -31.32747 -31.10133 -30.52823 -28.03494 -25.69880 -24.28698 -23.16762 -22.52571 -21.42403 -20.84105 -19.58413 -17.81824 -16.96036 -16.44471 -16.07293 -15.71129 -15.33135 -15.24904 -14.94440 -14.51908 -14.38838 -14.21086 -13.95755 -13.59439 -13.46687 -13.15456 -12.89856 -12.85905 -12.23318 -12.12367 -11.87991 -11.67686 -11.53404 -11.29753 -11.14307 -11.13145 -10.89067 -10.61970 -10.45546 -9.92529 -9.64303 -9.22816 -9.17734 -9.03370 -8.82682 -8.78281 -8.29669 -5.93895 -3.98303 0.95709 1.10022 3.27733 3.30706 3.36136 3.40526 3.42379 3.57719 4.13660 4.33392 4.41753 4.48778 4.53004 4.64825 4.69841 4.75693 4.96246 4.97828 5.11163 5.17953 5.25038 5.40760 5.50855 5.51471 5.54300 5.63081 5.66793 5.78562 5.83685 5.85815 6.08360 6.24765 6.26711 6.28393 6.29562 6.66247 6.71055 6.92728 7.27091 7.76385 7.88777 7.92435 8.09566 8.41119 8.80692 9.10222 9.64992 11.17032 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002287 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.664093 B =12240.833650 C =12643.265721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.118 4.118 7 C 0.139 3.861 8 H 0.114 0.886 9 O -0.551 6.551 10 C 0.094 3.906 11 N -0.740 5.740 12 C 0.509 3.491 13 O -0.537 6.537 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.105 4.105 25 C -0.115 4.115 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.376 0.624 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.122 0.878 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -27.732 1.251 28.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.134 4.134 5 C -0.122 4.122 6 C -0.119 4.119 7 C 0.080 3.920 8 H 0.132 0.868 9 O -0.357 6.357 10 C -0.031 4.031 11 N -0.395 5.395 12 C 0.298 3.702 13 O -0.412 6.412 14 C -0.169 4.169 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.225 0.775 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.139 0.861 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.718 -27.651 1.638 28.754 hybrid contribution 0.268 0.875 -0.367 0.986 sum 7.986 -26.776 1.271 27.970 Atomic orbital electron populations 1.21757 0.94536 1.01773 1.02465 1.20557 0.96338 0.92559 1.02840 1.19945 0.98651 0.96348 0.93232 1.21013 0.99912 0.94823 0.97643 1.20990 0.98956 0.94745 0.97463 1.20376 1.01042 0.96468 0.93995 1.21044 0.90298 0.89245 0.91451 0.86843 1.86615 1.40020 1.92230 1.16823 1.21892 0.95948 0.82196 1.03050 1.46107 1.10835 1.05026 1.77489 1.21592 0.86272 0.87945 0.74430 1.90671 1.16610 1.85724 1.48210 1.21860 1.02914 0.89616 1.02558 1.18894 0.91233 0.91420 0.98495 1.21198 0.93211 0.91185 1.50963 0.92626 1.25034 0.94873 0.99204 0.95340 1.69989 1.01305 1.31830 1.49769 0.86637 0.78200 0.84472 0.78529 1.20253 1.21312 1.20252 1.20863 0.99013 0.95020 0.97412 1.20982 0.99893 0.94743 0.97658 0.92430 0.92353 0.92439 0.91032 0.91030 0.85952 0.85702 0.77515 0.91492 0.90823 0.76399 0.90229 0.90187 0.95866 0.95860 0.92912 0.86059 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.09 -0.52 6.06 -27.88 -0.17 -0.69 16 3 C -0.08 -0.66 5.13 -104.63 -0.54 -1.20 16 4 C -0.12 -0.96 9.70 -39.59 -0.38 -1.34 16 5 C -0.10 -0.91 9.68 -39.58 -0.38 -1.30 16 6 C -0.12 -1.10 5.00 -104.62 -0.52 -1.62 16 7 C 0.14 1.32 3.30 -27.88 -0.09 1.23 16 8 H 0.11 1.00 8.05 -51.93 -0.42 0.58 16 9 O -0.55 -5.31 12.88 -35.23 -0.45 -5.77 16 10 C 0.09 1.16 5.32 -4.04 -0.02 1.14 16 11 N -0.74 -10.55 5.45 -60.29 -0.33 -10.88 16 12 C 0.51 9.98 7.83 -10.99 -0.09 9.89 16 13 O -0.54 -12.91 15.98 5.55 0.09 -12.82 16 14 C -0.13 -2.68 5.64 -27.89 -0.16 -2.84 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.73 13.29 55.43 0.74 -27.00 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.11 -0.91 9.33 -39.58 -0.37 -1.28 16 25 C -0.11 -0.94 9.70 -39.58 -0.38 -1.33 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.38 2.70 7.39 45.56 0.34 3.04 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 4.77 8.35 -40.82 -0.34 4.43 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.12 0.83 6.62 -52.48 -0.35 0.49 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -35.39 363.87 -8.98 -44.38 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.22 Total: 2.58 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.27 Total: -12.83 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.41 Total: -37.88 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.36 Total: -18.59 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.39 -8.98 -44.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291522191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.913 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds