Wall clock time and date at job start Tue Mar 31 2020 07:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47057 * 2 1 4 4 C 1.38230 * 120.00365 * 89.99644 * 3 2 1 5 5 C 1.38235 * 120.00326 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99814 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00196 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46818 * 25.00639 * 7 6 5 9 9 O 1.42899 * 109.46823 * 145.00426 * 7 6 5 10 10 C 1.52994 * 109.47165 * 265.00399 * 7 6 5 11 11 N 1.46505 * 109.47107 * 180.02562 * 10 7 6 12 12 C 1.34773 * 120.00199 * 180.02562 * 11 10 7 13 13 O 1.21284 * 119.99909 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00255 * 179.97438 * 12 11 10 15 15 C 1.52994 * 109.47163 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47165 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99718 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00239 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46921 * 59.99605 * 20 18 16 22 22 H 1.48495 * 109.46903 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46743 * 299.99516 * 20 18 16 24 24 C 1.38239 * 120.00062 * 0.02871 * 6 5 4 25 25 C 1.38234 * 119.99750 * 270.02378 * 3 2 1 26 26 H 1.08998 * 109.47200 * 60.00502 * 1 2 3 27 27 H 1.09002 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47026 * 300.00180 * 1 2 3 29 29 H 1.08997 * 109.47026 * 239.99820 * 2 1 3 30 30 H 1.08998 * 109.47200 * 119.99498 * 2 1 3 31 31 H 1.08000 * 120.00356 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.00616 * 179.70664 * 5 4 3 33 33 H 0.96693 * 114.00661 * 60.00513 * 9 7 6 34 34 H 1.09001 * 109.47449 * 299.99854 * 10 7 6 35 35 H 1.09004 * 109.47262 * 59.99654 * 10 7 6 36 36 H 0.97000 * 119.99873 * 359.97438 * 11 10 7 37 37 H 1.08997 * 109.46897 * 299.99413 * 14 12 11 38 38 H 1.09004 * 109.47310 * 59.99363 * 14 12 11 39 39 H 1.09001 * 109.47449 * 299.99859 * 15 14 12 40 40 H 1.09000 * 109.47514 * 60.00110 * 15 14 12 41 41 H 0.96999 * 120.00594 * 180.02562 * 19 18 16 42 42 H 1.08005 * 120.00103 * 179.97438 * 24 6 5 43 43 H 1.08000 * 120.00029 * 359.97337 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7229 3.3760 1.1971 6 6 2.9533 4.0276 -0.0001 7 6 3.4546 5.4488 -0.0002 8 1 3.9847 5.6472 0.9313 9 8 4.3422 5.6407 -1.1036 10 6 2.2691 6.4077 -0.1266 11 7 2.7564 7.7893 -0.1273 12 6 1.8841 8.8115 -0.2292 13 8 0.6956 8.5877 -0.3208 14 6 2.3853 10.2327 -0.2294 15 6 1.1998 11.1916 -0.3559 16 6 1.7011 12.6128 -0.3567 17 1 2.7594 12.8121 -0.2747 18 6 0.8087 13.6586 -0.4610 19 7 -0.4800 13.4158 -0.5603 20 14 1.4300 15.4202 -0.4613 21 1 2.3521 15.6197 -1.6080 22 1 0.2794 16.3508 -0.5842 23 1 2.1524 15.6904 0.8077 24 6 2.7230 3.3759 -1.1973 25 6 2.2622 2.0725 -1.1972 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.0830 1.5634 2.1324 32 1 2.8984 3.8868 2.1323 33 1 3.9369 5.4811 -1.9668 34 1 1.7390 6.2093 -1.0582 35 1 1.5920 6.2612 0.7150 36 1 3.7069 7.9683 -0.0537 37 1 2.9156 10.4310 0.7020 38 1 3.0622 10.3792 -1.0711 39 1 0.6698 10.9932 -1.2875 40 1 0.5227 11.0453 0.4857 41 1 -1.1080 14.1515 -0.6341 42 1 2.9026 3.8851 -2.1327 43 1 2.0823 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291522191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:19 Heat of formation + Delta-G solvation = -115.876995 kcal Electronic energy + Delta-G solvation = -21967.272584 eV Core-core repulsion = 18589.091820 eV Total energy + Delta-G solvation = -3378.180764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07569 -40.40742 -38.39138 -35.61609 -35.28852 -34.93962 -33.04432 -31.90431 -31.38875 -29.11425 -27.43317 -25.24956 -23.81555 -23.57470 -22.95223 -21.57569 -21.04758 -18.84167 -18.59139 -17.58991 -17.25339 -16.89244 -16.48839 -16.43538 -16.17384 -15.82351 -15.56659 -14.98106 -14.63167 -14.56926 -14.36446 -14.20885 -14.11368 -14.03949 -13.61456 -13.34628 -13.23230 -12.77113 -12.76240 -12.50877 -12.29672 -12.11725 -11.90729 -11.90188 -11.67441 -11.64191 -11.32303 -11.28326 -10.72672 -10.56039 -10.12054 -9.84819 -9.50599 -8.17559 -6.31815 0.30931 0.47419 1.42389 1.47174 1.54859 1.70420 2.19848 2.44727 2.77252 3.15067 3.39659 3.63493 3.78591 3.84529 3.94500 4.05362 4.11542 4.12913 4.30320 4.49134 4.51176 4.53689 4.55247 4.59084 4.68165 4.71030 4.86284 5.01853 5.05972 5.08543 5.09038 5.19529 5.36254 5.40772 5.47450 5.51339 5.59132 5.63398 5.70643 5.85629 6.06671 6.17988 6.57574 6.64719 6.86477 7.33664 7.38475 8.94910 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002287 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.664093 B =12240.833650 C =12643.265721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.133 4.133 7 C 0.157 3.843 8 H 0.125 0.875 9 O -0.557 6.557 10 C 0.095 3.905 11 N -0.713 5.713 12 C 0.511 3.489 13 O -0.591 6.591 14 C -0.119 4.119 15 C 0.042 3.958 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.262 1.262 24 C -0.116 4.116 25 C -0.126 4.126 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.387 0.613 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.418 0.582 37 H 0.105 0.895 38 H 0.104 0.896 39 H -0.018 1.018 40 H -0.018 1.018 41 H 0.263 0.737 42 H 0.135 0.865 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.795 -28.184 1.425 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.132 4.132 6 C -0.134 4.134 7 C 0.097 3.903 8 H 0.142 0.858 9 O -0.365 6.365 10 C -0.030 4.030 11 N -0.367 5.367 12 C 0.299 3.701 13 O -0.471 6.471 14 C -0.159 4.159 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.187 1.187 24 C -0.133 4.133 25 C -0.144 4.144 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.237 0.763 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.000 1.000 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.153 0.847 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.214 -28.142 1.812 29.993 hybrid contribution -0.504 0.902 -0.434 1.120 sum 9.710 -27.240 1.378 28.952 Atomic orbital electron populations 1.21748 0.94554 1.02398 1.01737 1.20594 0.96211 0.91540 1.03779 1.20255 0.98037 0.97302 0.93170 1.21276 0.99819 0.94855 0.98508 1.21233 0.98907 0.95213 0.97883 1.20401 1.02128 0.96335 0.94535 1.20854 0.88917 0.88571 0.91934 0.85769 1.86594 1.40190 1.92210 1.17505 1.22024 0.97309 0.81347 1.02295 1.45789 1.10955 1.04931 1.74990 1.21348 0.85865 0.88624 0.74233 1.90658 1.18930 1.86374 1.51154 1.21636 1.00419 0.88988 1.04871 1.18687 0.92818 0.93427 0.94631 1.21699 0.94288 0.91793 1.50425 0.90558 1.26168 0.94919 1.04869 0.94650 1.70174 1.03078 1.33527 1.51016 0.85347 0.77696 0.77571 0.79468 1.18682 1.21348 1.18667 1.21125 0.98865 0.95446 0.97906 1.21251 0.99837 0.94827 0.98503 0.93177 0.91071 0.93139 0.90123 0.90082 0.84478 0.84593 0.76298 0.92273 0.91774 0.74458 0.87705 0.87752 0.99997 0.99982 0.92854 0.84724 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 71.98 0.71 -0.88 16 2 C -0.08 -0.89 6.06 29.85 0.18 -0.71 16 3 C -0.09 -1.31 5.13 -19.87 -0.10 -1.41 16 4 C -0.13 -1.94 9.70 22.27 0.22 -1.73 16 5 C -0.11 -1.89 9.68 22.27 0.22 -1.68 16 6 C -0.13 -2.32 5.00 -19.86 -0.10 -2.42 16 7 C 0.16 2.72 3.30 29.85 0.10 2.82 16 8 H 0.12 1.91 8.05 -2.39 -0.02 1.89 16 9 O -0.56 -9.57 12.88 -148.98 -1.92 -11.49 16 10 C 0.09 2.27 5.32 86.38 0.46 2.73 16 11 N -0.71 -19.41 5.45 -463.06 -2.52 -21.93 16 12 C 0.51 20.05 7.83 87.66 0.69 20.74 16 13 O -0.59 -29.54 15.98 -3.04 -0.05 -29.59 16 14 C -0.12 -4.87 5.64 29.84 0.17 -4.70 16 15 C 0.04 2.38 4.26 29.85 0.13 2.51 16 16 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 18 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 19 N -0.94 -60.15 13.29 21.45 0.28 -59.86 16 20 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 C -0.12 -1.88 9.33 22.27 0.21 -1.67 16 25 C -0.13 -1.94 9.70 22.27 0.22 -1.72 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 30 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 31 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.39 4.81 7.39 -74.06 -0.55 4.26 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.42 8.84 8.35 -92.71 -0.77 8.06 16 37 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 39 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 40 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 41 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.13 1.68 6.62 -2.91 -0.02 1.66 16 43 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -79.14 363.87 1.29 -77.85 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.32 Total: 17.61 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 3.78 Total: -19.28 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -2.24 Total: -81.79 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.97 Total: -41.08 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -79.14 1.29 -77.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291522191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.025 kcal (2) G-P(sol) polarization free energy of solvation -79.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds