Wall clock time and date at job start Tue Mar 31 2020 07:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47140 * 340.00196 * 7 6 5 9 9 O 1.42901 * 109.47339 * 219.99717 * 7 6 5 10 10 C 1.52999 * 109.46996 * 100.00078 * 7 6 5 11 11 N 1.46497 * 109.47157 * 184.99934 * 10 7 6 12 12 C 1.34775 * 120.00372 * 179.97438 * 11 10 7 13 13 O 1.21284 * 119.99880 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00273 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47058 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47015 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99980 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99703 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99870 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00173 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47165 * 89.99877 * 20 18 16 22 22 H 1.48504 * 109.47122 * 210.00038 * 20 18 16 23 23 H 1.48498 * 109.47130 * 329.99927 * 20 18 16 24 24 C 1.38238 * 119.99693 * 359.97438 * 6 5 4 25 25 C 1.38234 * 120.00082 * 0.02562 * 24 6 5 26 26 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 27 27 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 29 29 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 30 30 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 33 33 H 0.96701 * 114.00078 * 300.00242 * 9 7 6 34 34 H 1.09004 * 109.47302 * 305.00037 * 10 7 6 35 35 H 1.09007 * 109.47462 * 64.99918 * 10 7 6 36 36 H 0.96999 * 119.99815 * 0.02562 * 11 10 7 37 37 H 1.08997 * 109.47243 * 300.00283 * 14 12 11 38 38 H 1.08997 * 109.47463 * 60.00571 * 14 12 11 39 39 H 1.09004 * 109.47302 * 300.00061 * 15 14 12 40 40 H 1.09000 * 109.47700 * 60.00250 * 15 14 12 41 41 H 0.96998 * 120.00288 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.99643 * 179.97438 * 24 6 5 43 43 H 1.07999 * 120.00025 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4685 5.4438 -0.0001 8 1 3.2624 5.9038 0.9664 9 8 2.8120 6.1854 -1.0302 10 6 4.9773 5.4444 -0.2539 11 7 5.4918 6.8109 -0.1358 12 6 6.8045 7.0550 -0.3195 13 8 7.5597 6.1434 -0.5832 14 6 7.3339 8.4607 -0.1974 15 6 8.8426 8.4612 -0.4514 16 6 9.3721 9.8669 -0.3286 17 1 8.6997 10.6786 -0.0935 18 6 10.7151 10.1165 -0.5166 19 7 11.1771 11.3431 -0.4100 20 14 11.8780 8.7126 -0.9240 21 1 11.9567 8.5468 -2.3976 22 1 13.2288 9.0170 -0.3872 23 1 11.3730 7.4578 -0.3109 24 6 2.7246 3.3753 -1.1972 25 6 2.2584 2.0739 -1.1972 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 2.0829 1.5633 2.1325 32 1 2.9131 3.8814 2.1324 33 1 2.9519 5.8321 -1.9194 34 1 5.4694 4.8061 0.4800 35 1 5.1773 5.0663 -1.2565 36 1 4.8879 7.5400 0.0755 37 1 6.8420 9.0992 -0.9312 38 1 7.1337 8.8385 0.8052 39 1 9.3348 7.8226 0.2822 40 1 9.0426 8.0836 -1.4541 41 1 12.1219 11.5187 -0.5418 42 1 2.9045 3.8845 -2.1325 43 1 2.0744 1.5662 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291522195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:23 Heat of formation + Delta-G solvation = -88.742378 kcal Electronic energy + Delta-G solvation = -21990.153153 eV Core-core repulsion = 18613.149034 eV Total energy + Delta-G solvation = -3377.004119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29485 -39.20788 -37.60048 -34.42032 -34.18366 -33.45380 -31.41837 -31.27498 -30.67381 -28.19751 -26.00866 -24.34051 -23.24074 -22.51987 -21.19508 -20.87450 -19.64236 -17.85103 -17.27807 -16.49795 -16.22411 -15.91865 -15.42710 -15.33145 -14.99171 -14.61995 -14.20623 -14.04240 -14.00268 -13.86005 -13.60312 -13.14419 -13.03397 -12.76317 -12.53917 -12.41323 -12.07056 -11.73462 -11.60430 -11.40045 -11.31867 -11.17049 -10.94334 -10.53121 -10.14153 -10.02799 -9.77064 -9.27233 -9.25929 -9.15789 -8.91056 -8.87894 -8.49130 -6.01426 -3.99999 0.91048 1.05635 3.13345 3.25016 3.38968 3.45287 3.48830 3.56626 4.09611 4.28253 4.36848 4.46881 4.52355 4.58811 4.63846 4.71169 4.90386 4.92701 5.06320 5.13679 5.19242 5.33986 5.39614 5.46319 5.48501 5.56216 5.61619 5.71656 5.76194 5.77152 6.03785 6.10999 6.12694 6.20552 6.25375 6.58132 6.62936 6.72298 7.22662 7.38319 7.45472 7.77470 7.82095 8.51882 8.66825 9.01885 9.61640 11.11399 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036351 B = 0.002373 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.076668 B =11797.911850 C =12164.832948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.118 4.118 7 C 0.139 3.861 8 H 0.114 0.886 9 O -0.550 6.550 10 C 0.094 3.906 11 N -0.737 5.737 12 C 0.510 3.490 13 O -0.543 6.543 14 C -0.122 4.122 15 C 0.001 3.999 16 C -0.525 4.525 17 H 0.073 0.927 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.105 4.105 25 C -0.115 4.115 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.376 0.624 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.403 0.597 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.263 0.737 42 H 0.121 0.879 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.296 -21.150 1.249 32.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.134 4.134 5 C -0.121 4.121 6 C -0.119 4.119 7 C 0.080 3.920 8 H 0.132 0.868 9 O -0.356 6.356 10 C -0.031 4.031 11 N -0.392 5.392 12 C 0.298 3.702 13 O -0.419 6.419 14 C -0.162 4.162 15 C -0.037 4.037 16 C -0.563 4.563 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.186 1.186 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.225 0.775 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.237 0.763 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.139 0.861 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.758 -21.349 1.547 31.978 hybrid contribution 0.596 -0.669 -0.567 1.060 sum -23.162 -22.018 0.980 31.972 Atomic orbital electron populations 1.21751 0.94609 1.01769 1.02285 1.20565 0.96259 0.92589 1.02995 1.19950 0.98653 0.96262 0.93225 1.21022 0.99945 0.94785 0.97661 1.21002 0.98673 0.94943 0.97456 1.20362 1.01079 0.96503 0.93992 1.21044 0.89974 0.88046 0.92981 0.86812 1.86631 1.74804 1.55813 1.18369 1.21926 0.92906 0.85577 1.02686 1.46075 1.09569 1.09105 1.74446 1.21567 0.80870 0.92844 0.74890 1.90654 1.56880 1.47104 1.47242 1.21664 1.00716 0.90465 1.03333 1.19371 0.89248 0.97702 0.97332 1.21126 0.94136 0.92428 1.48564 0.90905 1.24977 0.98254 0.95465 0.94595 1.69911 1.14544 1.19431 1.50360 0.86791 0.80006 0.83620 0.79104 1.20257 1.21454 1.18557 1.20872 0.99166 0.94895 0.97391 1.20987 0.99915 0.94703 0.97677 0.92516 0.92339 0.92524 0.90948 0.90949 0.85929 0.85692 0.77546 0.90775 0.91410 0.76262 0.89549 0.89563 0.95857 0.96308 0.92738 0.86075 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.09 -0.50 6.06 -27.89 -0.17 -0.67 16 3 C -0.08 -0.62 5.13 -104.63 -0.54 -1.16 16 4 C -0.12 -0.91 9.70 -39.58 -0.38 -1.30 16 5 C -0.10 -0.86 9.67 -39.58 -0.38 -1.25 16 6 C -0.12 -1.05 4.97 -104.62 -0.52 -1.57 16 7 C 0.14 1.25 3.24 -27.88 -0.09 1.16 16 8 H 0.11 0.95 8.00 -51.93 -0.42 0.54 16 9 O -0.55 -5.11 13.14 -35.23 -0.46 -5.58 16 10 C 0.09 1.09 5.29 -4.04 -0.02 1.07 16 11 N -0.74 -9.92 5.50 -60.29 -0.33 -10.26 16 12 C 0.51 9.40 7.83 -10.99 -0.09 9.31 16 13 O -0.54 -12.20 15.98 5.55 0.09 -12.11 16 14 C -0.12 -2.40 5.64 -27.88 -0.16 -2.56 16 15 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 16 C -0.52 -15.18 9.66 -34.43 -0.33 -15.52 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 20 Si 0.88 22.82 27.47 -169.99 -4.67 18.15 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 24 C -0.11 -0.87 9.32 -39.58 -0.37 -1.24 16 25 C -0.11 -0.90 9.70 -39.58 -0.38 -1.29 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.13 0.86 8.04 -52.49 -0.42 0.44 16 33 H 0.38 2.53 7.50 45.56 0.34 2.87 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 4.49 8.47 -40.82 -0.35 4.15 16 37 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 40 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.12 0.78 6.79 -52.49 -0.36 0.43 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -35.45 360.79 -8.61 -44.06 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.19 Total: 1.24 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.26 Total: -13.50 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.44 Total: -37.70 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.37 Total: -17.69 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.45 -8.61 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291522195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.683 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds