Wall clock time and date at job start Tue Mar 31 2020 07:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47229 * 2 1 4 4 C 1.38233 * 120.00207 * 89.99423 * 3 2 1 5 5 C 1.38234 * 120.00037 * 179.72405 * 4 3 2 6 6 C 1.38234 * 120.00240 * 0.26327 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47140 * 340.00196 * 7 6 5 9 9 O 1.42901 * 109.47339 * 219.99717 * 7 6 5 10 10 C 1.52999 * 109.46996 * 100.00078 * 7 6 5 11 11 N 1.46497 * 109.47157 * 184.99934 * 10 7 6 12 12 C 1.34775 * 120.00372 * 179.97438 * 11 10 7 13 13 O 1.21284 * 119.99880 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00273 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47058 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47015 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99980 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99703 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99870 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00173 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47165 * 89.99877 * 20 18 16 22 22 H 1.48504 * 109.47122 * 210.00038 * 20 18 16 23 23 H 1.48498 * 109.47130 * 329.99927 * 20 18 16 24 24 C 1.38238 * 119.99693 * 359.97438 * 6 5 4 25 25 C 1.38234 * 120.00082 * 0.02562 * 24 6 5 26 26 H 1.09006 * 109.47180 * 60.00059 * 1 2 3 27 27 H 1.09004 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47454 * 300.00132 * 1 2 3 29 29 H 1.09000 * 109.47015 * 240.00030 * 2 1 3 30 30 H 1.09001 * 109.46743 * 119.99783 * 2 1 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.00009 * 180.28389 * 5 4 3 33 33 H 0.96701 * 114.00078 * 300.00242 * 9 7 6 34 34 H 1.09004 * 109.47302 * 305.00037 * 10 7 6 35 35 H 1.09007 * 109.47462 * 64.99918 * 10 7 6 36 36 H 0.96999 * 119.99815 * 0.02562 * 11 10 7 37 37 H 1.08997 * 109.47243 * 300.00283 * 14 12 11 38 38 H 1.08997 * 109.47463 * 60.00571 * 14 12 11 39 39 H 1.09004 * 109.47302 * 300.00061 * 15 14 12 40 40 H 1.09000 * 109.47700 * 60.00250 * 15 14 12 41 41 H 0.96998 * 120.00288 * 179.97438 * 19 18 16 42 42 H 1.08001 * 119.99643 * 179.97438 * 24 6 5 43 43 H 1.07999 * 120.00025 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2626 2.0725 1.1971 5 6 2.7288 3.3738 1.1971 6 6 2.9596 4.0253 -0.0001 7 6 3.4685 5.4438 -0.0001 8 1 3.2624 5.9038 0.9664 9 8 2.8120 6.1854 -1.0302 10 6 4.9773 5.4444 -0.2539 11 7 5.4918 6.8109 -0.1358 12 6 6.8045 7.0550 -0.3195 13 8 7.5597 6.1434 -0.5832 14 6 7.3339 8.4607 -0.1974 15 6 8.8426 8.4612 -0.4514 16 6 9.3721 9.8669 -0.3286 17 1 8.6997 10.6786 -0.0935 18 6 10.7151 10.1165 -0.5166 19 7 11.1771 11.3431 -0.4100 20 14 11.8780 8.7126 -0.9240 21 1 11.9567 8.5468 -2.3976 22 1 13.2288 9.0170 -0.3872 23 1 11.3730 7.4578 -0.3109 24 6 2.7246 3.3753 -1.1972 25 6 2.2584 2.0739 -1.1972 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 2.0829 1.5633 2.1325 32 1 2.9131 3.8814 2.1324 33 1 2.9519 5.8321 -1.9194 34 1 5.4694 4.8061 0.4800 35 1 5.1773 5.0663 -1.2565 36 1 4.8879 7.5400 0.0755 37 1 6.8420 9.0992 -0.9312 38 1 7.1337 8.8385 0.8052 39 1 9.3348 7.8226 0.2822 40 1 9.0426 8.0836 -1.4541 41 1 12.1219 11.5187 -0.5418 42 1 2.9045 3.8845 -2.1325 43 1 2.0744 1.5662 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291522195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:22 Heat of formation + Delta-G solvation = -113.395885 kcal Electronic energy + Delta-G solvation = -21991.222209 eV Core-core repulsion = 18613.149034 eV Total energy + Delta-G solvation = -3378.073175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08194 -40.42527 -38.39140 -35.61040 -35.30514 -34.94406 -33.33464 -31.90303 -31.43193 -29.26006 -27.59063 -25.18844 -23.82630 -23.36278 -22.82203 -21.57421 -21.05515 -19.23050 -18.57333 -17.71643 -17.26352 -16.89887 -16.52246 -16.27847 -16.18297 -15.79570 -15.58083 -14.85264 -14.76856 -14.63918 -14.54491 -14.43885 -14.33681 -14.09032 -13.43759 -13.40304 -13.23983 -12.98243 -12.88042 -12.28446 -12.12255 -12.11498 -11.96945 -11.87303 -11.77013 -11.67337 -11.40180 -11.28346 -10.78285 -10.75977 -10.13037 -9.85239 -9.51335 -8.31508 -6.34424 0.30621 0.47062 1.33041 1.34822 1.50071 1.67460 2.19644 2.34931 2.76462 3.03975 3.40951 3.62076 3.77476 3.84736 3.93327 4.04918 4.08140 4.12192 4.30556 4.40671 4.48402 4.49458 4.54500 4.57673 4.68091 4.70053 4.86057 5.00831 5.02181 5.06428 5.08906 5.19364 5.31454 5.36447 5.43397 5.44720 5.48106 5.58983 5.61165 5.70390 6.06290 6.23559 6.55546 6.64543 6.72009 7.29343 7.30897 8.84119 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036351 B = 0.002373 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.076668 B =11797.911850 C =12164.832948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.133 4.133 7 C 0.155 3.845 8 H 0.123 0.877 9 O -0.559 6.559 10 C 0.095 3.905 11 N -0.714 5.714 12 C 0.514 3.486 13 O -0.588 6.588 14 C -0.117 4.117 15 C 0.005 3.995 16 C -0.530 4.530 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.115 4.115 25 C -0.127 4.127 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.387 0.613 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.417 0.583 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.010 0.990 40 H 0.008 0.992 41 H 0.267 0.733 42 H 0.135 0.865 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 -22.686 1.202 34.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.087 4.087 4 C -0.145 4.145 5 C -0.131 4.131 6 C -0.133 4.133 7 C 0.096 3.904 8 H 0.141 0.859 9 O -0.366 6.366 10 C -0.029 4.029 11 N -0.367 5.367 12 C 0.303 3.697 13 O -0.468 6.468 14 C -0.157 4.157 15 C -0.033 4.033 16 C -0.568 4.568 17 H 0.069 0.931 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.764 3.236 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.133 4.133 25 C -0.144 4.144 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.237 0.763 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.153 0.847 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.140 -22.876 1.502 34.023 hybrid contribution 0.901 -0.178 -0.542 1.066 sum -24.239 -23.054 0.960 33.465 Atomic orbital electron populations 1.21731 0.94140 1.02403 1.01906 1.20606 0.96592 0.91558 1.03601 1.20250 0.98099 0.97162 0.93194 1.21277 0.99897 0.94838 0.98483 1.21244 0.98642 0.95359 0.97901 1.20387 1.02052 0.96414 0.94492 1.20869 0.87769 0.88496 0.93314 0.85913 1.86611 1.74689 1.56144 1.19199 1.22049 0.94732 0.83887 1.02245 1.45813 1.08037 1.10657 1.72235 1.21197 0.82129 0.91598 0.74804 1.90641 1.58373 1.47995 1.49797 1.21498 0.97214 0.92123 1.04860 1.19225 0.93021 0.94838 0.96235 1.21442 0.94025 0.93668 1.47639 0.93141 1.25817 1.00160 0.97784 0.94743 1.70022 1.15242 1.21349 1.51738 0.85817 0.78229 0.80345 0.79246 1.19344 1.20304 1.18637 1.21130 0.99011 0.95269 0.97902 1.21249 0.99908 0.94809 0.98477 0.92903 0.91216 0.92880 0.90377 0.90334 0.84513 0.84564 0.76295 0.91593 0.91830 0.74549 0.87947 0.87898 0.97201 0.97327 0.92375 0.84724 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 71.98 0.71 -0.55 16 2 C -0.09 -0.86 6.06 29.84 0.18 -0.67 16 3 C -0.09 -1.22 5.13 -19.87 -0.10 -1.32 16 4 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 5 C -0.11 -1.75 9.67 22.27 0.22 -1.53 16 6 C -0.13 -2.15 4.97 -19.86 -0.10 -2.25 16 7 C 0.16 2.49 3.24 29.85 0.10 2.59 16 8 H 0.12 1.76 8.00 -2.39 -0.02 1.74 16 9 O -0.56 -9.17 13.14 -148.98 -1.96 -11.12 16 10 C 0.10 2.06 5.29 86.38 0.46 2.52 16 11 N -0.71 -17.84 5.50 -463.06 -2.55 -20.39 16 12 C 0.51 18.32 7.83 87.66 0.69 19.00 16 13 O -0.59 -26.13 15.98 -3.04 -0.05 -26.18 16 14 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 15 C 0.00 0.24 3.33 29.85 0.10 0.34 16 16 C -0.53 -30.87 9.66 25.60 0.25 -30.63 16 17 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 18 C 0.01 0.76 5.47 84.66 0.46 1.22 16 19 N -0.94 -59.41 13.96 21.45 0.30 -59.12 16 20 Si 0.94 47.17 27.47 68.60 1.88 49.05 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.26 -13.11 6.54 99.48 0.65 -12.46 16 24 C -0.12 -1.74 9.32 22.27 0.21 -1.53 16 25 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 26 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 30 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 31 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.14 1.66 8.04 -2.91 -0.02 1.64 16 33 H 0.39 4.40 7.50 -74.06 -0.56 3.84 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.42 8.20 8.47 -92.71 -0.79 7.42 16 37 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 40 H 0.01 0.44 7.53 -2.39 -0.02 0.42 16 41 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 42 H 0.13 1.52 6.79 -2.91 -0.02 1.50 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -75.72 360.79 1.01 -74.71 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.39 Total: 13.37 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 3.77 Total: -20.33 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.25 Total: -79.50 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -2.01 Total: -37.31 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.88 Total: 49.05 kcal Total: -75.72 1.01 -74.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291522195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.687 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds