Wall clock time and date at job start Tue Mar 31 2020 06:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94547 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47045 * 89.99988 * 7 6 5 9 9 C 1.46497 * 119.99849 * 270.00196 * 8 7 6 10 10 C 1.34780 * 119.99990 * 90.00019 * 8 7 6 11 11 O 1.21285 * 119.99590 * 359.97438 * 10 8 7 12 12 C 1.50693 * 119.99908 * 179.97438 * 10 8 7 13 13 C 1.53002 * 109.47185 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.47522 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99732 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99940 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99941 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47073 * 89.99609 * 18 16 14 20 20 H 1.48504 * 109.46821 * 209.99905 * 18 16 14 21 21 H 1.48496 * 109.47055 * 329.99427 * 18 16 14 22 22 C 1.38249 * 120.10948 * 0.04714 * 6 5 4 23 23 C 1.38166 * 120.05826 * 359.67723 * 22 6 5 24 24 C 1.50701 * 120.02867 * 180.29901 * 23 22 6 25 25 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 26 26 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.03063 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47189 * 209.99792 * 7 6 5 31 31 H 1.08996 * 109.46612 * 330.00034 * 7 6 5 32 32 H 1.09000 * 109.47193 * 90.00271 * 9 8 7 33 33 H 1.09007 * 109.46803 * 209.99964 * 9 8 7 34 34 H 1.08993 * 109.47370 * 330.00055 * 9 8 7 35 35 H 1.08999 * 109.47637 * 299.99859 * 12 10 8 36 36 H 1.09006 * 109.47363 * 60.00258 * 12 10 8 37 37 H 1.08999 * 109.47201 * 300.00607 * 13 12 10 38 38 H 1.09006 * 109.46770 * 59.99882 * 13 12 10 39 39 H 0.97003 * 120.00047 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.96881 * 179.97438 * 22 6 5 41 41 H 1.08999 * 109.46852 * 270.27195 * 24 23 22 42 42 H 1.08994 * 109.46996 * 30.28079 * 24 23 22 43 43 H 1.08996 * 109.46797 * 150.27971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.2072 5.4540 1.3807 9 6 3.1873 6.2476 2.0707 10 6 5.3489 5.1244 2.0166 11 8 6.1930 4.4669 1.4454 12 6 5.5766 5.5727 3.4371 13 6 6.9391 5.0698 3.9185 14 6 7.1672 5.5187 5.3389 15 1 6.4152 6.1037 5.8476 16 6 8.3352 5.1816 5.9893 17 7 8.5339 5.5729 7.2291 18 14 9.6353 4.1690 5.1097 19 1 10.5793 5.0765 4.4093 20 1 10.3789 3.3500 6.1004 21 1 8.9812 3.2756 4.1202 22 6 4.0559 2.5171 -0.0004 23 6 3.4311 1.2848 0.0058 24 6 4.2538 0.0222 0.0127 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0005 29 1 1.3340 4.5113 -0.0019 30 1 4.9441 4.9382 -0.5139 31 1 3.3582 5.7462 -0.5148 32 1 2.4944 5.5812 2.5844 33 1 3.6672 6.9031 2.7975 34 1 2.6415 6.8490 1.3438 35 1 5.5549 6.6615 3.4825 36 1 4.7926 5.1667 4.0764 37 1 6.9613 3.9810 3.8731 38 1 7.7229 5.4762 3.2791 39 1 9.3558 5.3360 7.6866 40 1 5.1344 2.5753 -0.0004 41 1 4.4565 -0.2849 -1.0133 42 1 5.1955 0.2049 0.5302 43 1 3.7042 -0.7667 0.5262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291766325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:12 Heat of formation + Delta-G solvation = -58.070253 kcal Electronic energy + Delta-G solvation = -23053.029648 eV Core-core repulsion = 19677.355572 eV Total energy + Delta-G solvation = -3375.674076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47446 -39.46268 -37.67264 -35.30809 -33.52536 -32.94638 -31.60137 -30.72918 -28.08364 -27.32521 -26.74883 -26.39233 -24.65075 -22.06321 -21.42763 -20.46046 -18.59964 -18.11727 -17.17331 -16.51411 -16.12189 -15.97305 -15.87702 -15.57109 -14.75874 -14.28915 -14.06391 -13.99043 -13.59875 -13.35383 -13.20836 -13.02560 -12.55614 -12.50364 -12.37297 -12.27323 -12.14075 -12.12741 -11.74131 -11.45544 -11.31140 -11.18125 -10.93494 -10.85578 -10.11010 -9.99062 -9.75671 -9.23370 -9.13872 -8.85035 -8.53226 -8.47665 -8.11366 -6.00925 -3.99363 1.26312 1.29255 3.09658 3.12419 3.25268 3.39711 3.46165 3.57468 3.79080 4.53119 4.59054 4.68737 4.78995 4.83455 4.87529 4.98794 5.16519 5.18935 5.25969 5.29132 5.34712 5.45344 5.49587 5.53813 5.62941 5.66800 5.74009 5.76481 5.91772 6.09584 6.13864 6.16463 6.21558 6.33466 6.58392 6.67161 6.73565 6.74867 7.24358 7.39477 7.46991 7.64644 7.82104 8.51905 8.65890 9.02211 9.62371 11.11974 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.003694 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.218898 B = 7578.735273 C = 8276.568048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.124 3.876 4 C -0.209 4.209 5 C -0.074 4.074 6 C -0.135 4.135 7 C 0.158 3.842 8 N -0.623 5.623 9 C 0.081 3.919 10 C 0.513 3.487 11 O -0.537 6.537 12 C -0.120 4.120 13 C 0.002 3.998 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.261 1.261 22 C -0.057 4.057 23 C -0.118 4.118 24 C -0.105 4.105 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.023 0.977 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.137 0.863 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 -5.611 -17.577 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.228 4.228 5 C -0.093 4.093 6 C -0.136 4.136 7 C 0.036 3.964 8 N -0.358 5.358 9 C -0.062 4.062 10 C 0.303 3.697 11 O -0.413 6.413 12 C -0.160 4.160 13 C -0.036 4.036 14 C -0.562 4.562 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.076 4.076 23 C -0.118 4.118 24 C -0.162 4.162 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.154 0.846 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.003 -6.152 -17.723 26.001 hybrid contribution 0.179 -0.263 -0.219 0.387 sum -17.824 -6.415 -17.942 26.091 Atomic orbital electron populations 1.23027 0.78715 1.03736 1.01236 1.86059 1.21044 1.27022 1.88791 1.18850 0.91808 0.84096 0.97410 1.21121 0.99651 0.92323 1.09715 1.20754 0.93795 0.96828 0.97918 1.20176 0.93560 0.95907 1.03985 1.20225 1.00813 0.91636 0.83741 1.48075 1.19120 1.54875 1.13736 1.21772 0.91584 0.95164 0.97721 1.21537 0.79944 0.78621 0.89596 1.90615 1.43823 1.38816 1.68075 1.21688 1.02550 1.01934 0.89829 1.19369 0.90812 0.96994 0.96406 1.21118 1.04255 1.34549 0.96253 0.90991 1.24971 0.98127 0.95479 0.94672 1.69914 1.26519 1.46596 1.11308 0.86796 0.81892 0.81128 0.79759 1.20249 1.21464 1.18504 1.21026 1.00630 0.90316 0.95585 1.19308 0.90524 0.96348 1.05650 1.20610 0.99141 0.94360 1.02091 0.92721 0.92823 0.88400 0.85692 0.86071 0.89252 0.90254 0.92943 0.90306 0.91626 0.89707 0.89766 0.95880 0.96311 0.92747 0.84568 0.91555 0.91316 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.59 9.54 -19.41 -0.19 -3.77 16 3 C 0.12 1.55 6.66 -39.22 -0.26 1.29 16 4 C -0.21 -2.28 9.04 -39.43 -0.36 -2.64 16 5 C -0.07 -0.81 9.69 -39.61 -0.38 -1.19 16 6 C -0.13 -1.72 5.46 -104.60 -0.57 -2.30 16 7 C 0.16 1.95 5.57 -5.19 -0.03 1.92 16 8 N -0.62 -8.80 2.86 -182.96 -0.52 -9.32 16 9 C 0.08 0.85 10.29 59.85 0.62 1.47 16 10 C 0.51 9.55 7.67 -10.99 -0.08 9.47 16 11 O -0.54 -11.72 15.08 5.55 0.08 -11.63 16 12 C -0.12 -2.39 4.19 -27.89 -0.12 -2.51 16 13 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 14 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 15 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 18 Si 0.88 22.82 27.47 -169.99 -4.67 18.15 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 22 C -0.06 -0.82 9.35 -39.60 -0.37 -1.19 16 23 C -0.12 -1.60 5.89 -104.47 -0.62 -2.21 16 24 C -0.11 -1.27 9.79 36.01 0.35 -0.92 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.09 1.22 7.36 -51.93 -0.38 0.84 16 31 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.83 6.44 -51.92 -0.33 0.50 16 34 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 35 H 0.08 1.55 7.40 -51.93 -0.38 1.17 16 36 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 37 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 38 H 0.02 0.49 7.53 -51.93 -0.39 0.09 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.14 2.12 7.57 -52.49 -0.40 1.72 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.07 0.81 7.53 -51.93 -0.39 0.41 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -34.93 354.87 -7.24 -42.16 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.71 Total: -2.26 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.35 Total: -11.18 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.25 Total: -36.81 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.10 Total: -15.41 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.93 -7.24 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291766325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.907 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds