Wall clock time and date at job start Tue Mar 31 2020 06:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94547 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47045 * 89.99988 * 7 6 5 9 9 C 1.46497 * 119.99849 * 270.00196 * 8 7 6 10 10 C 1.34780 * 119.99990 * 90.00019 * 8 7 6 11 11 O 1.21285 * 119.99590 * 359.97438 * 10 8 7 12 12 C 1.50693 * 119.99908 * 179.97438 * 10 8 7 13 13 C 1.53002 * 109.47185 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.47522 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99732 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00242 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99940 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99941 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47073 * 89.99609 * 18 16 14 20 20 H 1.48504 * 109.46821 * 209.99905 * 18 16 14 21 21 H 1.48496 * 109.47055 * 329.99427 * 18 16 14 22 22 C 1.38249 * 120.10948 * 0.04714 * 6 5 4 23 23 C 1.38166 * 120.05826 * 359.67723 * 22 6 5 24 24 C 1.50701 * 120.02867 * 180.29901 * 23 22 6 25 25 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 26 26 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.03063 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47189 * 209.99792 * 7 6 5 31 31 H 1.08996 * 109.46612 * 330.00034 * 7 6 5 32 32 H 1.09000 * 109.47193 * 90.00271 * 9 8 7 33 33 H 1.09007 * 109.46803 * 209.99964 * 9 8 7 34 34 H 1.08993 * 109.47370 * 330.00055 * 9 8 7 35 35 H 1.08999 * 109.47637 * 299.99859 * 12 10 8 36 36 H 1.09006 * 109.47363 * 60.00258 * 12 10 8 37 37 H 1.08999 * 109.47201 * 300.00607 * 13 12 10 38 38 H 1.09006 * 109.46770 * 59.99882 * 13 12 10 39 39 H 0.97003 * 120.00047 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.96881 * 179.97438 * 22 6 5 41 41 H 1.08999 * 109.46852 * 270.27195 * 24 23 22 42 42 H 1.08994 * 109.46996 * 30.28079 * 24 23 22 43 43 H 1.08996 * 109.46797 * 150.27971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.2072 5.4540 1.3807 9 6 3.1873 6.2476 2.0707 10 6 5.3489 5.1244 2.0166 11 8 6.1930 4.4669 1.4454 12 6 5.5766 5.5727 3.4371 13 6 6.9391 5.0698 3.9185 14 6 7.1672 5.5187 5.3389 15 1 6.4152 6.1037 5.8476 16 6 8.3352 5.1816 5.9893 17 7 8.5339 5.5729 7.2291 18 14 9.6353 4.1690 5.1097 19 1 10.5793 5.0765 4.4093 20 1 10.3789 3.3500 6.1004 21 1 8.9812 3.2756 4.1202 22 6 4.0559 2.5171 -0.0004 23 6 3.4311 1.2848 0.0058 24 6 4.2538 0.0222 0.0127 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3203 -0.0005 29 1 1.3340 4.5113 -0.0019 30 1 4.9441 4.9382 -0.5139 31 1 3.3582 5.7462 -0.5148 32 1 2.4944 5.5812 2.5844 33 1 3.6672 6.9031 2.7975 34 1 2.6415 6.8490 1.3438 35 1 5.5549 6.6615 3.4825 36 1 4.7926 5.1667 4.0764 37 1 6.9613 3.9810 3.8731 38 1 7.7229 5.4762 3.2791 39 1 9.3558 5.3360 7.6866 40 1 5.1344 2.5753 -0.0004 41 1 4.4565 -0.2849 -1.0133 42 1 5.1955 0.2049 0.5302 43 1 3.7042 -0.7667 0.5262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291766325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:11 Heat of formation + Delta-G solvation = -79.730393 kcal Electronic energy + Delta-G solvation = -23053.968902 eV Core-core repulsion = 19677.355572 eV Total energy + Delta-G solvation = -3376.613330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40468 -40.70017 -38.60282 -36.50310 -35.57516 -33.94364 -33.34907 -31.92664 -28.93264 -28.39875 -27.88769 -27.58259 -25.94049 -23.17654 -22.85685 -21.69221 -19.99992 -19.08367 -18.91642 -17.75540 -17.28738 -17.05326 -16.85692 -16.66549 -16.22403 -15.86084 -15.28542 -14.90051 -14.85315 -14.55015 -14.46540 -14.26441 -14.11013 -13.76896 -13.46699 -13.38468 -13.10643 -13.00446 -12.94757 -12.85059 -12.60906 -12.37189 -12.03896 -11.97560 -11.94391 -11.76430 -11.67767 -11.39842 -10.78824 -10.69885 -9.78752 -9.65037 -9.02454 -8.32525 -6.35088 0.35156 0.36210 1.31683 1.33605 1.49122 1.70632 2.14847 2.34096 2.37646 2.82804 3.03133 3.71308 3.83224 3.86982 3.94047 4.19329 4.31834 4.34697 4.37667 4.40272 4.41532 4.46297 4.49846 4.59532 4.68374 4.72125 4.73979 4.78363 4.81243 4.92069 4.95486 5.07052 5.23978 5.32634 5.34104 5.40112 5.43811 5.59552 5.62821 5.68338 5.84513 6.22695 6.42031 6.44736 6.70912 7.27514 7.30284 8.83198 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.003694 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.218898 B = 7578.735273 C = 8276.568048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.116 3.884 4 C -0.206 4.206 5 C -0.066 4.066 6 C -0.146 4.146 7 C 0.158 3.842 8 N -0.611 5.611 9 C 0.071 3.929 10 C 0.510 3.490 11 O -0.580 6.580 12 C -0.113 4.113 13 C 0.007 3.993 14 C -0.528 4.528 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.080 4.080 23 C -0.143 4.143 24 C -0.102 4.102 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.116 0.884 28 H 0.156 0.844 29 H 0.158 0.842 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.005 0.995 38 H 0.009 0.991 39 H 0.267 0.733 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.408 -5.109 -19.032 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.070 3.930 4 C -0.225 4.225 5 C -0.084 4.084 6 C -0.147 4.147 7 C 0.037 3.963 8 N -0.344 5.344 9 C -0.070 4.070 10 C 0.300 3.700 11 O -0.460 6.460 12 C -0.153 4.153 13 C -0.031 4.031 14 C -0.566 4.566 15 H 0.069 0.931 16 C -0.183 4.183 17 N -0.584 5.584 18 Si 0.761 3.239 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.159 4.159 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.135 0.865 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.023 0.977 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.786 -5.629 -19.187 28.843 hybrid contribution 0.867 -0.417 0.240 0.991 sum -19.919 -6.046 -18.948 28.149 Atomic orbital electron populations 1.23345 0.76458 1.05487 1.02310 1.86038 1.23404 1.26701 1.88602 1.18994 0.91563 0.85272 0.97142 1.21499 1.01143 0.91616 1.08226 1.21107 0.92920 0.98286 0.96079 1.20251 0.94582 0.95223 1.04674 1.20395 1.00696 0.92729 0.82527 1.48040 1.18151 1.53810 1.14368 1.22090 0.90875 0.95287 0.98781 1.21213 0.81162 0.78589 0.89078 1.90606 1.45748 1.40899 1.68760 1.21495 0.99608 1.02915 0.91287 1.19201 0.93871 0.95769 0.94214 1.21425 1.03629 1.33736 0.97824 0.93125 1.25782 1.00425 0.96729 0.95363 1.70020 1.27515 1.48108 1.12711 0.85850 0.79482 0.79786 0.78739 1.19187 1.20253 1.18887 1.20949 0.99609 0.91748 0.97547 1.19472 0.91745 0.96310 1.06814 1.20573 0.98481 0.94263 1.02547 0.91890 0.91326 0.86543 0.82655 0.82475 0.91413 0.85940 0.92081 0.90490 0.87662 0.87960 0.88818 0.97659 0.97308 0.92352 0.87330 0.90589 0.92557 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.07 9.54 -92.39 -0.88 -7.96 16 3 C 0.12 2.74 6.66 22.51 0.15 2.89 16 4 C -0.21 -3.82 9.04 22.37 0.20 -3.62 16 5 C -0.07 -1.19 9.69 22.25 0.22 -0.97 16 6 C -0.15 -3.50 5.46 -19.85 -0.11 -3.61 16 7 C 0.16 3.57 5.57 85.63 0.48 4.05 16 8 N -0.61 -15.98 2.86 -851.14 -2.43 -18.41 16 9 C 0.07 1.23 10.29 127.77 1.31 2.54 16 10 C 0.51 18.85 7.67 87.65 0.67 19.52 16 11 O -0.58 -26.02 15.08 -3.04 -0.05 -26.07 16 12 C -0.11 -4.47 4.19 29.85 0.13 -4.35 16 13 C 0.01 0.38 3.33 29.85 0.10 0.48 16 14 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 15 H 0.05 3.12 7.99 -2.91 -0.02 3.09 16 16 C 0.01 0.89 5.47 84.65 0.46 1.35 16 17 N -0.94 -59.71 13.96 21.45 0.30 -59.42 16 18 Si 0.94 47.74 27.47 68.60 1.88 49.62 16 19 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.26 -13.54 6.54 99.48 0.65 -12.89 16 22 C -0.08 -2.34 9.35 22.26 0.21 -2.14 16 23 C -0.14 -3.94 5.89 -19.77 -0.12 -4.05 16 24 C -0.10 -2.58 9.79 71.24 0.70 -1.89 16 25 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 26 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 27 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.07 1.84 7.36 -2.39 -0.02 1.83 16 31 H 0.12 1.70 7.84 -2.39 -0.02 1.68 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.39 6.44 -2.38 -0.02 1.37 16 34 H 0.10 1.04 7.89 -2.39 -0.02 1.02 16 35 H 0.10 3.63 7.40 -2.39 -0.02 3.61 16 36 H 0.09 3.48 8.11 -2.38 -0.02 3.46 16 37 H 0.01 0.27 7.16 -2.39 -0.02 0.26 16 38 H 0.01 0.45 7.53 -2.38 -0.02 0.44 16 39 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.11 3.70 7.57 -2.91 -0.02 3.68 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.07 1.69 7.53 -2.39 -0.02 1.67 16 Total: -1.00 -78.30 354.87 5.52 -72.78 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.93 Total: 8.74 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 5.76 Total: -19.29 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -2.13 Total: -77.83 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.93 Total: -34.03 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.62 kcal Total: -78.30 5.52 -72.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291766325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.951 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds