Wall clock time and date at job start Tue Mar 31 2020 07:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38264 * 119.94774 * 2 1 4 4 C 1.38143 * 120.05889 * 180.02562 * 3 2 1 5 5 C 1.38732 * 119.94271 * 0.02562 * 4 3 2 6 6 O 1.35895 * 120.05474 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00316 * 354.55095 * 6 5 4 8 8 H 1.08998 * 109.46974 * 324.93792 * 7 6 5 9 9 C 1.53008 * 109.46660 * 84.93473 * 7 6 5 10 10 C 1.53003 * 109.47496 * 204.93307 * 7 6 5 11 11 N 1.46500 * 109.46550 * 65.00428 * 10 7 6 12 12 C 1.34775 * 119.99490 * 180.02562 * 11 10 7 13 13 O 1.21286 * 120.00533 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99901 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47228 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47228 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99532 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00071 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00421 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99983 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47234 * 90.00033 * 20 18 16 22 22 H 1.48502 * 109.47016 * 209.99698 * 20 18 16 23 23 H 1.48490 * 109.47101 * 329.99959 * 20 18 16 24 24 C 1.38733 * 119.88842 * 0.27364 * 5 4 3 25 25 C 1.38153 * 119.94284 * 359.43043 * 24 5 4 26 26 H 1.09001 * 109.46934 * 89.99260 * 1 2 3 27 27 H 1.08996 * 109.47161 * 209.99503 * 1 2 3 28 28 H 1.08999 * 109.46857 * 329.99642 * 1 2 3 29 29 H 1.08002 * 119.97118 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.03107 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46856 * 180.02562 * 9 7 6 32 32 H 1.08994 * 109.47058 * 299.99703 * 9 7 6 33 33 H 1.08998 * 109.47166 * 60.00437 * 9 7 6 34 34 H 1.08996 * 109.46786 * 184.99875 * 10 7 6 35 35 H 1.09001 * 109.46862 * 305.00125 * 10 7 6 36 36 H 0.96998 * 120.00465 * 359.97438 * 11 10 7 37 37 H 1.09005 * 109.47143 * 299.99404 * 14 12 11 38 38 H 1.09001 * 109.47039 * 59.99707 * 14 12 11 39 39 H 1.09006 * 109.46983 * 299.99431 * 15 14 12 40 40 H 1.09001 * 109.47373 * 59.99882 * 15 14 12 41 41 H 0.96996 * 120.00753 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.02998 * 179.71991 * 24 5 4 43 43 H 1.08001 * 119.97139 * 180.27104 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5787 1.2007 -0.0005 5 6 4.2735 -0.0001 -0.0016 6 8 5.6324 -0.0001 -0.0016 7 6 6.2812 1.2674 -0.1214 8 1 5.6967 1.9144 -0.7755 9 6 6.3993 1.9125 1.2610 10 6 7.6783 1.0714 -0.7137 11 7 7.5612 0.5650 -2.0834 12 6 8.6708 0.3157 -2.8067 13 8 9.7661 0.5108 -2.3239 14 6 8.5504 -0.2058 -4.2155 15 6 9.9474 -0.4029 -4.8074 16 6 9.8271 -0.9249 -6.2160 17 1 8.8517 -1.0991 -6.6458 18 6 10.9621 -1.1801 -6.9559 19 7 10.8572 -1.6352 -8.1853 20 14 12.6491 -0.8782 -6.2126 21 1 13.1173 -2.1113 -5.5303 22 1 13.6060 -0.5141 -7.2883 23 1 12.5652 0.2306 -5.2285 24 6 3.5786 -1.2008 -0.0079 25 6 2.1971 -1.1981 -0.0012 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6559 2.1326 -0.0004 30 1 4.1174 2.1368 -0.0010 31 1 6.8938 2.8796 1.1697 32 1 5.4041 2.0522 1.6829 33 1 6.9838 1.2655 1.9152 34 1 8.2061 2.0250 -0.7227 35 1 8.2326 0.3549 -0.1075 36 1 6.6852 0.4086 -2.4695 37 1 8.0224 -1.1593 -4.2062 38 1 7.9962 0.5106 -4.8219 39 1 10.4759 0.5504 -4.8168 40 1 10.5013 -1.1195 -4.2009 41 1 11.6557 -1.8151 -8.7058 42 1 4.1172 -2.1370 -0.0133 43 1 1.6557 -2.1326 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292110950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:42 Heat of formation + Delta-G solvation = -69.881338 kcal Electronic energy + Delta-G solvation = -22263.209079 eV Core-core repulsion = 18887.022836 eV Total energy + Delta-G solvation = -3376.186243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67994 -39.25569 -38.15887 -34.95144 -33.45194 -32.62430 -31.82289 -31.29842 -30.97774 -27.33297 -26.63835 -25.20085 -23.62641 -22.14770 -21.21629 -20.96508 -19.59935 -18.64192 -17.27002 -16.55023 -16.06442 -15.75651 -15.67384 -15.23816 -15.17901 -14.74807 -14.09088 -13.99031 -13.90139 -13.78752 -13.48795 -13.16385 -12.91945 -12.72167 -12.55026 -12.40229 -12.28800 -12.17421 -11.79590 -11.47627 -11.38690 -11.09635 -10.94935 -10.90033 -10.14266 -10.02439 -9.76619 -9.29117 -9.24071 -9.14782 -8.90148 -8.48722 -8.30881 -6.00985 -3.99626 1.04682 1.13252 2.84558 3.14204 3.39156 3.39880 3.45915 3.46824 3.57047 4.30382 4.48272 4.52809 4.53915 4.60102 4.65704 4.71499 4.94005 5.04753 5.12481 5.25646 5.27064 5.29302 5.34464 5.40589 5.44887 5.50618 5.63539 5.67607 5.76651 5.79133 6.02149 6.07850 6.10839 6.13001 6.32018 6.50538 6.57829 6.72087 7.16693 7.38879 7.45906 7.75290 7.81768 8.52103 8.66096 9.02192 9.62084 11.11877 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.002754 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.476101 B =10162.936867 C =11068.878095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.081 4.081 4 C -0.208 4.208 5 C 0.128 3.872 6 O -0.304 6.304 7 C 0.072 3.928 8 H 0.080 0.920 9 C -0.178 4.178 10 C 0.125 3.875 11 N -0.740 5.740 12 C 0.511 3.489 13 O -0.542 6.542 14 C -0.122 4.122 15 C 0.002 3.998 16 C -0.524 4.524 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.148 4.148 25 C -0.080 4.080 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.263 0.737 42 H 0.131 0.869 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 6.720 20.891 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.129 4.129 3 C -0.099 4.099 4 C -0.226 4.226 5 C 0.083 3.917 6 O -0.218 6.218 7 C 0.015 3.985 8 H 0.098 0.902 9 C -0.235 4.235 10 C 0.001 3.999 11 N -0.394 5.394 12 C 0.300 3.700 13 O -0.418 6.418 14 C -0.162 4.162 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.166 4.166 25 C -0.099 4.099 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.234 0.766 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.149 0.851 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.784 6.656 21.104 29.683 hybrid contribution 0.415 0.248 0.114 0.497 sum -19.369 6.904 21.217 29.546 Atomic orbital electron populations 1.20719 0.91142 1.02532 1.02215 1.19837 0.96218 0.93086 1.03748 1.20820 0.93287 0.97668 0.98128 1.21299 0.95336 0.97233 1.08749 1.19027 0.82521 0.94092 0.96091 1.86199 1.16070 1.31924 1.87636 1.22740 0.93655 0.84246 0.97846 0.90173 1.22307 1.03415 1.01651 0.96156 1.21370 0.93826 1.00952 0.83780 1.46095 1.09784 1.69269 1.14275 1.21539 0.83366 0.76230 0.88871 1.90653 1.26759 1.51717 1.72639 1.21667 1.03321 1.01528 0.89680 1.19371 0.90748 0.97548 0.95970 1.21119 0.94863 1.43757 0.96478 0.90938 1.24974 0.99279 0.94388 0.94643 1.69910 1.29403 1.45590 1.09399 0.86790 0.84020 0.79641 0.79066 1.20238 1.21463 1.18539 1.20492 0.93780 0.96532 1.05836 1.20867 0.93008 0.97808 0.98171 0.91366 0.91706 0.91812 0.85945 0.85289 0.90475 0.91409 0.90895 0.89678 0.90559 0.76616 0.89573 0.89619 0.95834 0.96262 0.92734 0.85076 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.13 -1.04 5.88 -104.60 -0.62 -1.65 16 3 C -0.08 -0.65 9.69 -39.61 -0.38 -1.04 16 4 C -0.21 -1.83 8.24 -39.43 -0.33 -2.15 16 5 C 0.13 1.31 6.60 -39.22 -0.26 1.05 16 6 O -0.30 -3.33 9.74 -19.41 -0.19 -3.52 16 7 C 0.07 0.65 2.26 -26.73 -0.06 0.59 16 8 H 0.08 0.64 6.31 -51.93 -0.33 0.31 16 9 C -0.18 -1.28 9.17 37.16 0.34 -0.93 16 10 C 0.12 1.46 5.34 -4.04 -0.02 1.44 16 11 N -0.74 -10.24 5.50 -60.29 -0.33 -10.58 16 12 C 0.51 9.51 7.83 -10.98 -0.09 9.43 16 13 O -0.54 -12.15 15.98 5.55 0.09 -12.06 16 14 C -0.12 -2.43 5.64 -27.88 -0.16 -2.58 16 15 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 16 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 20 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 24 C -0.15 -1.45 9.99 -39.43 -0.39 -1.84 16 25 C -0.08 -0.68 9.69 -39.60 -0.38 -1.06 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.13 0.94 5.43 -52.49 -0.29 0.65 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.46 6.91 -51.93 -0.36 0.10 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 4.69 8.47 -40.82 -0.35 4.34 16 37 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 40 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -34.91 357.66 -8.18 -43.09 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.73 Total: -0.30 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.51 Total: -12.67 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.44 Total: -38.11 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.10 Total: -15.59 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.91 -8.18 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292110950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.792 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds