Wall clock time and date at job start Tue Mar 31 2020 07:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38264 * 119.94774 * 2 1 4 4 C 1.38143 * 120.05889 * 180.02562 * 3 2 1 5 5 C 1.38732 * 119.94271 * 0.02562 * 4 3 2 6 6 O 1.35895 * 120.05474 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00316 * 354.55095 * 6 5 4 8 8 H 1.08998 * 109.46974 * 324.93792 * 7 6 5 9 9 C 1.53008 * 109.46660 * 84.93473 * 7 6 5 10 10 C 1.53003 * 109.47496 * 204.93307 * 7 6 5 11 11 N 1.46500 * 109.46550 * 65.00428 * 10 7 6 12 12 C 1.34775 * 119.99490 * 180.02562 * 11 10 7 13 13 O 1.21286 * 120.00533 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99901 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47228 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47228 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99532 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00071 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00421 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99983 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47234 * 90.00033 * 20 18 16 22 22 H 1.48502 * 109.47016 * 209.99698 * 20 18 16 23 23 H 1.48490 * 109.47101 * 329.99959 * 20 18 16 24 24 C 1.38733 * 119.88842 * 0.27364 * 5 4 3 25 25 C 1.38153 * 119.94284 * 359.43043 * 24 5 4 26 26 H 1.09001 * 109.46934 * 89.99260 * 1 2 3 27 27 H 1.08996 * 109.47161 * 209.99503 * 1 2 3 28 28 H 1.08999 * 109.46857 * 329.99642 * 1 2 3 29 29 H 1.08002 * 119.97118 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.03107 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.46856 * 180.02562 * 9 7 6 32 32 H 1.08994 * 109.47058 * 299.99703 * 9 7 6 33 33 H 1.08998 * 109.47166 * 60.00437 * 9 7 6 34 34 H 1.08996 * 109.46786 * 184.99875 * 10 7 6 35 35 H 1.09001 * 109.46862 * 305.00125 * 10 7 6 36 36 H 0.96998 * 120.00465 * 359.97438 * 11 10 7 37 37 H 1.09005 * 109.47143 * 299.99404 * 14 12 11 38 38 H 1.09001 * 109.47039 * 59.99707 * 14 12 11 39 39 H 1.09006 * 109.46983 * 299.99431 * 15 14 12 40 40 H 1.09001 * 109.47373 * 59.99882 * 15 14 12 41 41 H 0.96996 * 120.00753 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.02998 * 179.71991 * 24 5 4 43 43 H 1.08001 * 119.97139 * 180.27104 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5787 1.2007 -0.0005 5 6 4.2735 -0.0001 -0.0016 6 8 5.6324 -0.0001 -0.0016 7 6 6.2812 1.2674 -0.1214 8 1 5.6967 1.9144 -0.7755 9 6 6.3993 1.9125 1.2610 10 6 7.6783 1.0714 -0.7137 11 7 7.5612 0.5650 -2.0834 12 6 8.6708 0.3157 -2.8067 13 8 9.7661 0.5108 -2.3239 14 6 8.5504 -0.2058 -4.2155 15 6 9.9474 -0.4029 -4.8074 16 6 9.8271 -0.9249 -6.2160 17 1 8.8517 -1.0991 -6.6458 18 6 10.9621 -1.1801 -6.9559 19 7 10.8572 -1.6352 -8.1853 20 14 12.6491 -0.8782 -6.2126 21 1 13.1173 -2.1113 -5.5303 22 1 13.6060 -0.5141 -7.2883 23 1 12.5652 0.2306 -5.2285 24 6 3.5786 -1.2008 -0.0079 25 6 2.1971 -1.1981 -0.0012 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5139 29 1 1.6559 2.1326 -0.0004 30 1 4.1174 2.1368 -0.0010 31 1 6.8938 2.8796 1.1697 32 1 5.4041 2.0522 1.6829 33 1 6.9838 1.2655 1.9152 34 1 8.2061 2.0250 -0.7227 35 1 8.2326 0.3549 -0.1075 36 1 6.6852 0.4086 -2.4695 37 1 8.0224 -1.1593 -4.2062 38 1 7.9962 0.5106 -4.8219 39 1 10.4759 0.5504 -4.8168 40 1 10.5013 -1.1195 -4.2009 41 1 11.6557 -1.8151 -8.7058 42 1 4.1172 -2.1370 -0.0133 43 1 1.6557 -2.1326 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292110950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:42 Heat of formation + Delta-G solvation = -92.322709 kcal Electronic energy + Delta-G solvation = -22264.182210 eV Core-core repulsion = 18887.022836 eV Total energy + Delta-G solvation = -3377.159374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42882 -40.60113 -38.90488 -36.09818 -35.51510 -33.63232 -33.11608 -32.40839 -31.74469 -28.74434 -27.34882 -26.56367 -24.29214 -23.19597 -22.71821 -21.73726 -21.06321 -19.35971 -19.19785 -17.75461 -17.40846 -16.79791 -16.56371 -16.26597 -16.22884 -16.01050 -15.54287 -14.99555 -14.79537 -14.64872 -14.51592 -14.40006 -14.26106 -13.81962 -13.56240 -13.40967 -13.20014 -13.06300 -12.89471 -12.78570 -12.37555 -12.18781 -12.07261 -11.97746 -11.78334 -11.74187 -11.56561 -11.40995 -10.80086 -10.78775 -10.14439 -9.92990 -8.96758 -8.31927 -6.35093 0.41031 0.47946 1.33358 1.34810 1.50184 1.65538 2.12889 2.20665 2.34795 2.81789 3.03572 3.54114 3.82444 3.91773 3.94301 4.01229 4.05561 4.12396 4.34462 4.38006 4.44438 4.48095 4.50479 4.59138 4.67449 4.79668 4.85315 4.86722 4.90021 4.98619 5.12848 5.17186 5.21462 5.30481 5.40793 5.43110 5.43332 5.43911 5.60382 5.72157 5.90434 6.22800 6.47982 6.50789 6.71135 7.25460 7.30282 8.83805 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.002754 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.476101 B =10162.936867 C =11068.878095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C -0.087 4.087 4 C -0.210 4.210 5 C 0.109 3.891 6 O -0.324 6.324 7 C 0.077 3.923 8 H 0.096 0.904 9 C -0.173 4.173 10 C 0.122 3.878 11 N -0.719 5.719 12 C 0.516 3.484 13 O -0.584 6.584 14 C -0.118 4.118 15 C 0.005 3.995 16 C -0.530 4.530 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.168 4.168 25 C -0.088 4.088 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.413 0.587 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.012 0.988 40 H 0.008 0.992 41 H 0.268 0.732 42 H 0.127 0.873 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.155 7.986 22.338 32.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.105 4.105 4 C -0.228 4.228 5 C 0.064 3.936 6 O -0.239 6.239 7 C 0.021 3.979 8 H 0.114 0.886 9 C -0.231 4.231 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.304 3.696 13 O -0.464 6.464 14 C -0.157 4.157 15 C -0.033 4.033 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.186 4.186 25 C -0.106 4.106 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.249 0.751 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.149 7.925 22.568 31.928 hybrid contribution 0.674 -0.168 -0.339 0.773 sum -20.475 7.757 22.229 31.201 Atomic orbital electron populations 1.20763 0.89451 1.03509 1.02789 1.20195 0.97584 0.92930 1.02752 1.21155 0.93241 0.98663 0.97460 1.21494 0.95808 0.97244 1.08302 1.19195 0.82262 0.94824 0.97339 1.86159 1.16725 1.32917 1.88069 1.22740 0.91994 0.84071 0.99081 0.88621 1.22287 1.03970 1.02097 0.94702 1.21540 0.95784 1.00749 0.82041 1.45871 1.09082 1.67436 1.14836 1.21150 0.83758 0.76140 0.88514 1.90638 1.28473 1.53968 1.73343 1.21499 1.00293 1.02997 0.90948 1.19222 0.93898 0.96191 0.93945 1.21428 0.93933 1.43249 0.98169 0.93270 1.25821 1.03273 0.94359 0.95055 1.70021 1.30714 1.46938 1.10760 0.85808 0.79625 0.79683 0.78476 1.19433 1.20245 1.18460 1.20662 0.94598 0.96556 1.06814 1.21119 0.92626 0.98944 0.97879 0.90886 0.90938 0.90718 0.83829 0.83818 0.88748 0.90654 0.91618 0.88797 0.91962 0.75123 0.88330 0.87867 0.96945 0.97375 0.92346 0.85528 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.26 16 2 C -0.13 -1.91 5.88 -19.85 -0.12 -2.02 16 3 C -0.09 -1.21 9.69 22.25 0.22 -1.00 16 4 C -0.21 -3.27 8.24 22.37 0.18 -3.09 16 5 C 0.11 2.12 6.60 22.51 0.15 2.27 16 6 O -0.32 -6.78 9.74 -92.37 -0.90 -7.68 16 7 C 0.08 1.26 2.26 30.60 0.07 1.32 16 8 H 0.10 1.26 6.31 -2.39 -0.02 1.25 16 9 C -0.17 -2.12 9.17 71.98 0.66 -1.46 16 10 C 0.12 2.69 5.34 86.38 0.46 3.15 16 11 N -0.72 -18.84 5.50 -463.05 -2.55 -21.39 16 12 C 0.52 18.72 7.83 87.66 0.69 19.40 16 13 O -0.58 -26.00 15.98 -3.05 -0.05 -26.05 16 14 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 15 C 0.01 0.28 3.33 29.85 0.10 0.37 16 16 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 17 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 18 C 0.01 0.75 5.47 84.65 0.46 1.22 16 19 N -0.94 -59.72 13.96 21.44 0.30 -59.42 16 20 Si 0.94 47.29 27.47 68.60 1.88 49.17 16 21 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.26 -12.99 6.54 99.48 0.65 -12.34 16 24 C -0.17 -3.23 9.99 22.37 0.22 -3.00 16 25 C -0.09 -1.39 9.69 22.26 0.22 -1.17 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 28 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 29 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.14 1.69 5.43 -2.91 -0.02 1.68 16 31 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 32 H 0.07 0.84 6.91 -2.39 -0.02 0.82 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.41 8.88 8.47 -92.71 -0.79 8.09 16 37 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 38 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.01 0.64 7.15 -2.38 -0.02 0.63 16 40 H 0.01 0.42 7.53 -2.39 -0.02 0.40 16 41 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 42 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -75.36 357.66 3.28 -72.08 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.16 Total: 12.79 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 4.44 Total: -19.50 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -2.25 Total: -80.81 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.95 Total: -33.73 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.88 Total: 49.17 kcal Total: -75.36 3.28 -72.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292110950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.245 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds