Wall clock time and date at job start Tue Mar 31 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 119.97063 * 2 1 4 4 C 1.38268 * 120.10988 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97155 * 180.02562 * 4 3 2 6 6 C 1.38139 * 120.05525 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94491 * 0.02562 * 6 4 3 8 8 O 1.35905 * 120.05258 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99604 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47046 * 179.97438 * 9 8 7 11 11 N 1.46507 * 109.47204 * 65.00026 * 10 9 8 12 12 C 1.34775 * 120.00290 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99741 * 0.02562 * 12 11 10 14 14 C 1.50691 * 119.99910 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47414 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99673 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00078 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99951 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46858 * 60.00104 * 20 18 16 22 22 H 1.48501 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47201 * 299.99922 * 20 18 16 24 24 C 1.38150 * 119.97223 * 180.23551 * 2 1 3 25 25 H 1.08993 * 109.47290 * 89.99692 * 1 2 3 26 26 H 1.09000 * 109.46914 * 209.99971 * 1 2 3 27 27 H 1.09002 * 109.47052 * 329.99742 * 1 2 3 28 28 H 1.08001 * 119.94795 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46840 * 269.97937 * 5 4 3 30 30 H 1.09003 * 109.47240 * 29.97753 * 5 4 3 31 31 H 1.08994 * 109.46878 * 149.97626 * 5 4 3 32 32 H 1.08005 * 120.02930 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47352 * 299.99771 * 9 8 7 34 34 H 1.08999 * 109.47144 * 59.99795 * 9 8 7 35 35 H 1.09001 * 109.47541 * 184.99954 * 10 9 8 36 36 H 1.08997 * 109.47488 * 304.99854 * 10 9 8 37 37 H 0.97001 * 119.99140 * 0.02562 * 11 10 9 38 38 H 1.08997 * 109.47819 * 300.00586 * 14 12 11 39 39 H 1.09002 * 109.47646 * 60.00633 * 14 12 11 40 40 H 1.09001 * 109.47505 * 300.00258 * 15 14 12 41 41 H 1.09002 * 109.47154 * 60.00398 * 15 14 12 42 42 H 0.96996 * 119.99625 * 179.97438 * 19 18 16 43 43 H 1.08006 * 120.02407 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5084 0.0001 6 6 4.2752 0.0071 -0.0005 7 6 3.5844 -1.1960 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4892 -3.5716 0.0005 10 6 4.4229 -4.7835 0.0004 11 7 5.1839 -4.8139 1.2520 12 6 6.0748 -5.8003 1.4753 13 8 6.2468 -6.6625 0.6399 14 6 6.8578 -5.8311 2.7624 15 6 7.7915 -7.0431 2.7625 16 6 8.5742 -7.0743 4.0499 17 1 8.4213 -6.3062 4.7936 18 6 9.4863 -8.0829 4.2780 19 7 9.6729 -9.0180 3.3721 20 14 10.4570 -8.1211 5.8735 21 1 9.5194 -8.2190 7.0210 22 1 11.3631 -9.2976 5.8735 23 1 11.2595 -6.8775 5.9947 24 6 2.1972 -1.1967 -0.0049 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6564 2.1323 -0.0004 29 1 4.5107 2.8241 -1.0275 30 1 3.7388 3.2661 0.5143 31 1 5.2828 2.3806 0.5138 32 1 5.3552 0.0102 -0.0014 33 1 2.8604 -3.5970 0.8905 34 1 2.8604 -3.5977 -0.8894 35 1 3.8337 -5.6962 -0.0887 36 1 5.1113 -4.7119 -0.8416 37 1 5.0459 -4.1244 1.9202 38 1 7.4474 -4.9186 2.8511 39 1 6.1697 -5.9022 3.6048 40 1 7.2023 -7.9558 2.6737 41 1 8.4797 -6.9716 1.9202 42 1 10.3148 -9.7272 3.5325 43 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292191146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:15 Heat of formation + Delta-G solvation = -77.985264 kcal Electronic energy + Delta-G solvation = -21829.146730 eV Core-core repulsion = 18452.609074 eV Total energy + Delta-G solvation = -3376.537655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54945 -39.14269 -38.09655 -34.66498 -33.87579 -33.41185 -31.50848 -30.93354 -29.41067 -27.56145 -27.14480 -25.65278 -23.38269 -22.05630 -21.45573 -20.72803 -19.65142 -17.92077 -16.96437 -16.57143 -16.34405 -16.22647 -15.52383 -15.18084 -15.02653 -14.40150 -14.25488 -14.14074 -13.73991 -13.56647 -13.32812 -13.28102 -12.96088 -12.87744 -12.35115 -12.16682 -12.11215 -12.04187 -11.75698 -11.70473 -11.13925 -11.08586 -10.96080 -10.88459 -10.59464 -9.91822 -9.63852 -9.16334 -8.99630 -8.93166 -8.79017 -8.41613 -8.29019 -5.93353 -3.97669 1.01024 1.16952 2.87119 3.29044 3.36460 3.40620 3.41738 3.42564 3.55685 4.36149 4.42409 4.49827 4.61700 4.70693 4.78782 4.89852 4.97240 5.01598 5.01673 5.20596 5.25924 5.29225 5.35443 5.41334 5.44625 5.51176 5.56252 5.67470 5.83737 5.86543 6.03716 6.20411 6.26777 6.29060 6.31878 6.50896 6.69937 6.93142 7.16811 7.76989 7.89673 7.90330 8.10287 8.41748 8.80273 9.10797 9.65573 11.17600 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.002365 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.950261 B =11835.951678 C =12489.978914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.162 4.162 4 C -0.044 4.044 5 C -0.115 4.115 6 C -0.159 4.159 7 C 0.140 3.860 8 O -0.309 6.309 9 C 0.049 3.951 10 C 0.122 3.878 11 N -0.742 5.742 12 C 0.510 3.490 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.217 4.217 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.400 0.600 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.331 22.617 -7.848 30.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.045 4.045 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.172 4.172 6 C -0.177 4.177 7 C 0.095 3.905 8 O -0.222 6.222 9 C -0.027 4.027 10 C -0.002 4.002 11 N -0.397 5.397 12 C 0.299 3.701 13 O -0.412 6.412 14 C -0.170 4.170 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.236 4.236 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.139 0.861 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.886 21.754 -8.510 30.039 hybrid contribution 0.209 0.160 1.119 1.150 sum -18.677 21.914 -7.391 29.727 Atomic orbital electron populations 1.20819 0.91040 1.02929 1.02469 1.19676 0.95928 0.92476 0.96417 1.20796 0.93438 0.97492 1.06344 1.19687 0.93596 0.94633 0.96526 1.20817 1.00142 0.93652 1.02589 1.20316 1.00412 0.89272 1.07731 1.18973 0.90401 0.85985 0.95150 1.86161 1.35616 1.12135 1.88298 1.23141 0.94415 0.82742 1.02352 1.21292 0.94688 0.95153 0.89055 1.46155 1.43252 1.30296 1.19990 1.21566 0.78633 0.79922 0.89986 1.90669 1.65489 1.37797 1.47215 1.21858 0.98887 1.03969 0.92259 1.18896 0.93207 0.90865 0.97082 1.21195 1.22171 1.10358 1.02819 0.92657 1.25032 0.97065 0.95625 0.96707 1.69993 1.35231 1.13523 1.34139 0.86645 0.79931 0.77425 0.83873 1.20268 1.21301 1.20248 1.21106 0.92903 0.98911 1.10653 0.90963 0.91450 0.91334 0.86095 0.90871 0.91325 0.91151 0.85147 0.91198 0.90545 0.89569 0.90629 0.76633 0.90191 0.90270 0.95841 0.95818 0.92913 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.04 -0.38 5.88 -104.64 -0.62 -0.99 16 3 C -0.16 -1.35 9.35 -39.56 -0.37 -1.72 16 4 C -0.04 -0.39 5.88 -104.65 -0.62 -1.01 16 5 C -0.12 -0.72 10.01 36.01 0.36 -0.36 16 6 C -0.16 -1.63 9.64 -39.43 -0.38 -2.02 16 7 C 0.14 1.51 6.69 -39.22 -0.26 1.25 16 8 O -0.31 -3.53 10.08 -19.44 -0.20 -3.73 16 9 C 0.05 0.45 4.87 37.16 0.18 0.63 16 10 C 0.12 1.48 6.06 -4.04 -0.02 1.46 16 11 N -0.74 -10.75 5.50 -60.29 -0.33 -11.08 16 12 C 0.51 10.06 7.83 -10.99 -0.09 9.97 16 13 O -0.54 -12.86 15.98 5.55 0.09 -12.77 16 14 C -0.13 -2.70 5.64 -27.89 -0.16 -2.86 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.22 -2.01 8.69 -39.44 -0.34 -2.35 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 28 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 34 H 0.08 0.56 7.65 -51.93 -0.40 0.16 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.40 4.86 8.47 -40.82 -0.35 4.51 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.13 0.96 6.30 -52.48 -0.33 0.63 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -35.25 364.74 -8.62 -43.87 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.92 Total: -0.33 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.48 Total: -11.33 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.40 Total: -38.12 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.11 Total: -16.49 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.25 -8.62 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292191146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.113 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds