Wall clock time and date at job start Tue Mar 31 2020 06:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 119.97063 * 2 1 4 4 C 1.38268 * 120.10988 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97155 * 180.02562 * 4 3 2 6 6 C 1.38139 * 120.05525 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94491 * 0.02562 * 6 4 3 8 8 O 1.35905 * 120.05258 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99604 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47046 * 179.97438 * 9 8 7 11 11 N 1.46507 * 109.47204 * 65.00026 * 10 9 8 12 12 C 1.34775 * 120.00290 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99741 * 0.02562 * 12 11 10 14 14 C 1.50691 * 119.99910 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47414 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99673 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00047 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00078 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99951 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46858 * 60.00104 * 20 18 16 22 22 H 1.48501 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47201 * 299.99922 * 20 18 16 24 24 C 1.38150 * 119.97223 * 180.23551 * 2 1 3 25 25 H 1.08993 * 109.47290 * 89.99692 * 1 2 3 26 26 H 1.09000 * 109.46914 * 209.99971 * 1 2 3 27 27 H 1.09002 * 109.47052 * 329.99742 * 1 2 3 28 28 H 1.08001 * 119.94795 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46840 * 269.97937 * 5 4 3 30 30 H 1.09003 * 109.47240 * 29.97753 * 5 4 3 31 31 H 1.08994 * 109.46878 * 149.97626 * 5 4 3 32 32 H 1.08005 * 120.02930 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47352 * 299.99771 * 9 8 7 34 34 H 1.08999 * 109.47144 * 59.99795 * 9 8 7 35 35 H 1.09001 * 109.47541 * 184.99954 * 10 9 8 36 36 H 1.08997 * 109.47488 * 304.99854 * 10 9 8 37 37 H 0.97001 * 119.99140 * 0.02562 * 11 10 9 38 38 H 1.08997 * 109.47819 * 300.00586 * 14 12 11 39 39 H 1.09002 * 109.47646 * 60.00633 * 14 12 11 40 40 H 1.09001 * 109.47505 * 300.00258 * 15 14 12 41 41 H 1.09002 * 109.47154 * 60.00398 * 15 14 12 42 42 H 0.96996 * 119.99625 * 179.97438 * 19 18 16 43 43 H 1.08006 * 120.02407 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5084 0.0001 6 6 4.2752 0.0071 -0.0005 7 6 3.5844 -1.1960 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4892 -3.5716 0.0005 10 6 4.4229 -4.7835 0.0004 11 7 5.1839 -4.8139 1.2520 12 6 6.0748 -5.8003 1.4753 13 8 6.2468 -6.6625 0.6399 14 6 6.8578 -5.8311 2.7624 15 6 7.7915 -7.0431 2.7625 16 6 8.5742 -7.0743 4.0499 17 1 8.4213 -6.3062 4.7936 18 6 9.4863 -8.0829 4.2780 19 7 9.6729 -9.0180 3.3721 20 14 10.4570 -8.1211 5.8735 21 1 9.5194 -8.2190 7.0210 22 1 11.3631 -9.2976 5.8735 23 1 11.2595 -6.8775 5.9947 24 6 2.1972 -1.1967 -0.0049 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6564 2.1323 -0.0004 29 1 4.5107 2.8241 -1.0275 30 1 3.7388 3.2661 0.5143 31 1 5.2828 2.3806 0.5138 32 1 5.3552 0.0102 -0.0014 33 1 2.8604 -3.5970 0.8905 34 1 2.8604 -3.5977 -0.8894 35 1 3.8337 -5.6962 -0.0887 36 1 5.1113 -4.7119 -0.8416 37 1 5.0459 -4.1244 1.9202 38 1 7.4474 -4.9186 2.8511 39 1 6.1697 -5.9022 3.6048 40 1 7.2023 -7.9558 2.6737 41 1 8.4797 -6.9716 1.9202 42 1 10.3148 -9.7272 3.5325 43 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292191146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:14 Heat of formation + Delta-G solvation = -100.770972 kcal Electronic energy + Delta-G solvation = -21830.134792 eV Core-core repulsion = 18452.609074 eV Total energy + Delta-G solvation = -3377.525718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29654 -40.60336 -38.89010 -35.98950 -35.51540 -34.44306 -33.12370 -32.06434 -30.48224 -28.08659 -27.94195 -27.42355 -24.58201 -23.29451 -22.61816 -21.45681 -21.20503 -18.84680 -18.63924 -17.61498 -17.52671 -17.02619 -16.82988 -16.53015 -16.50395 -16.13334 -15.07583 -14.86910 -14.68927 -14.54966 -14.28637 -14.15210 -14.01122 -13.92843 -13.64807 -13.33323 -13.24704 -12.97480 -12.77984 -12.70569 -12.55109 -12.49597 -12.30798 -11.91542 -11.74980 -11.64174 -11.61654 -11.32663 -10.75199 -10.56318 -10.11624 -9.56896 -9.11023 -8.17921 -6.32168 0.35859 0.49103 1.41814 1.46638 1.54353 1.69799 2.10911 2.25987 2.45092 2.76420 3.14674 3.64272 3.83829 3.91877 4.01551 4.07719 4.12551 4.28337 4.30426 4.40935 4.49620 4.50766 4.53566 4.61188 4.68246 4.75847 4.81483 4.85309 4.86539 5.00466 5.07883 5.12614 5.32171 5.37707 5.41318 5.50559 5.58364 5.63029 5.69232 5.85215 5.89390 6.17661 6.45330 6.56396 6.85907 7.31692 7.38008 8.94586 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.002365 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.950261 B =11835.951678 C =12489.978914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.169 4.169 4 C -0.050 4.050 5 C -0.115 4.115 6 C -0.183 4.183 7 C 0.122 3.878 8 O -0.330 6.330 9 C 0.056 3.944 10 C 0.119 3.881 11 N -0.718 5.718 12 C 0.512 3.488 13 O -0.589 6.589 14 C -0.120 4.120 15 C 0.042 3.958 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.263 1.263 24 C -0.224 4.224 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.101 0.899 39 H 0.105 0.895 40 H -0.016 1.016 41 H -0.019 1.019 42 H 0.263 0.737 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.021 24.944 -6.358 33.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.187 4.187 4 C -0.050 4.050 5 C -0.171 4.171 6 C -0.201 4.201 7 C 0.077 3.923 8 O -0.244 6.244 9 C -0.019 4.019 10 C -0.004 4.004 11 N -0.372 5.372 12 C 0.300 3.700 13 O -0.469 6.469 14 C -0.160 4.160 15 C 0.005 3.995 16 C -0.583 4.583 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.213 1.213 23 H -0.188 1.188 24 C -0.243 4.243 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.159 0.841 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.002 0.998 41 H -0.001 1.001 42 H 0.072 0.928 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.623 24.153 -7.006 32.523 hybrid contribution 0.671 -0.498 0.588 1.022 sum -19.951 23.655 -6.418 31.604 Atomic orbital electron populations 1.20870 0.89107 1.03835 1.03293 1.20063 0.97433 0.92225 0.95377 1.21125 0.93379 0.98495 1.05696 1.19997 0.94205 0.95033 0.95813 1.20864 1.00104 0.92843 1.03295 1.20483 1.00418 0.90088 1.09137 1.19161 0.91197 0.85676 0.96282 1.86109 1.36712 1.12852 1.88775 1.23139 0.93465 0.80812 1.04438 1.21455 0.94651 0.97298 0.87024 1.45891 1.41447 1.28749 1.21098 1.21299 0.79262 0.80361 0.89056 1.90654 1.67448 1.40167 1.48618 1.21633 0.98667 1.01570 0.94107 1.18687 0.93173 0.92287 0.95403 1.21689 1.22247 1.10861 1.03456 0.90669 1.26160 0.98385 0.95042 1.00945 1.70176 1.36223 1.14488 1.36864 0.85357 0.78266 0.77784 0.78732 1.18619 1.21266 1.18759 1.21321 0.92343 1.00059 1.10570 0.90064 0.90805 0.90234 0.84095 0.90082 0.89880 0.91213 0.85810 0.89254 0.88205 0.88803 0.92236 0.74846 0.88125 0.87642 0.99756 1.00051 0.92830 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.24 0.71 -0.29 16 2 C -0.05 -0.75 5.88 -19.88 -0.12 -0.86 16 3 C -0.17 -2.47 9.35 22.28 0.21 -2.26 16 4 C -0.05 -0.83 5.88 -19.88 -0.12 -0.95 16 5 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 6 C -0.18 -3.72 9.64 22.36 0.22 -3.50 16 7 C 0.12 2.52 6.69 22.50 0.15 2.67 16 8 O -0.33 -7.25 10.08 -92.48 -0.93 -8.18 16 9 C 0.06 0.93 4.87 71.98 0.35 1.28 16 10 C 0.12 2.80 6.06 86.38 0.52 3.32 16 11 N -0.72 -20.11 5.50 -463.06 -2.55 -22.66 16 12 C 0.51 20.35 7.83 87.65 0.69 21.04 16 13 O -0.59 -29.43 15.98 -3.04 -0.05 -29.48 16 14 C -0.12 -4.97 5.64 29.84 0.17 -4.81 16 15 C 0.04 2.40 4.26 29.85 0.13 2.53 16 16 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 17 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 18 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 19 N -0.94 -60.30 13.29 21.45 0.28 -60.02 16 20 Si 0.98 44.88 29.54 68.60 2.03 46.90 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 C -0.22 -3.74 8.69 22.36 0.19 -3.54 16 25 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 27 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 28 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.67 8.09 -2.39 -0.02 0.66 16 31 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.09 1.15 7.67 -2.39 -0.02 1.13 16 34 H 0.10 1.22 7.65 -2.39 -0.02 1.20 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 9.25 8.47 -92.71 -0.79 8.47 16 38 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 40 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 41 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 42 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.14 1.78 6.30 -2.91 -0.02 1.76 16 Total: -1.00 -79.79 364.74 3.50 -76.29 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.21 Total: 14.45 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.51 Total: -17.31 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.26 Total: -82.68 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.98 Total: -37.65 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -79.79 3.50 -76.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292191146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.485 kcal (2) G-P(sol) polarization free energy of solvation -79.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds