Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38163 * 120.03310 * 2 1 4 4 C 1.38238 * 120.05985 * 180.29900 * 3 2 1 5 5 C 1.38294 * 120.10931 * 359.67662 * 4 3 2 6 6 C 1.38119 * 120.05549 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.02545 * 179.67876 * 2 1 3 8 8 O 1.35903 * 120.05476 * 359.97438 * 7 2 1 9 9 C 1.42898 * 116.99823 * 185.14357 * 8 7 2 10 10 H 1.09003 * 109.47522 * 35.15875 * 9 8 7 11 11 C 1.52998 * 109.47474 * 275.15921 * 9 8 7 12 12 C 1.53008 * 109.47330 * 155.15462 * 9 8 7 13 13 N 1.46498 * 109.46885 * 300.00383 * 12 9 8 14 14 C 1.34780 * 119.99774 * 179.97438 * 13 12 9 15 15 O 1.21284 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99981 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.47270 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47270 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00065 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00135 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99936 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46855 * 90.00641 * 22 20 18 24 24 H 1.48506 * 109.47179 * 210.00277 * 22 20 18 25 25 H 1.48500 * 109.47452 * 329.99950 * 22 20 18 26 26 H 1.08993 * 109.46603 * 270.32318 * 1 2 3 27 27 H 1.08998 * 109.46590 * 30.32538 * 1 2 3 28 28 H 1.08998 * 109.47049 * 150.31894 * 1 2 3 29 29 H 1.08005 * 119.96827 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.94928 * 179.69630 * 4 3 2 31 31 H 1.07999 * 119.97244 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.03006 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.46512 * 299.99538 * 11 9 8 34 34 H 1.09001 * 109.47174 * 59.99438 * 11 9 8 35 35 H 1.08993 * 109.47356 * 180.02562 * 11 9 8 36 36 H 1.08993 * 109.47351 * 180.02562 * 12 9 8 37 37 H 1.09003 * 109.46481 * 59.99776 * 12 9 8 38 38 H 0.97003 * 120.00636 * 359.97438 * 13 12 9 39 39 H 1.08999 * 109.47365 * 300.00127 * 16 14 13 40 40 H 1.09003 * 109.47574 * 60.00039 * 16 14 13 41 41 H 1.08999 * 109.46900 * 300.00252 * 17 16 14 42 42 H 1.09003 * 109.46584 * 59.99907 * 17 16 14 43 43 H 0.96994 * 119.99927 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1961 0.0000 4 6 3.5810 1.1968 -0.0062 5 6 4.2753 0.0008 -0.0058 6 6 3.5887 -1.1977 0.0004 7 6 2.2012 -1.2010 0.0067 8 8 1.5233 -2.3789 0.0139 9 6 2.2989 -3.5729 0.1347 10 1 3.1531 -3.3872 0.7859 11 6 2.7953 -4.0008 -1.2478 12 6 1.4341 -4.6846 0.7327 13 7 0.9589 -4.2748 2.0564 14 6 0.1740 -5.1010 2.7761 15 8 -0.1384 -6.1838 2.3280 16 6 -0.3144 -4.6798 4.1381 17 6 -1.1793 -5.7913 4.7360 18 6 -1.6671 -5.3704 6.0983 19 1 -1.3879 -4.4067 6.4978 20 6 -2.4700 -6.2156 6.8345 21 7 -2.8096 -7.3894 6.3482 22 14 -3.0742 -5.6941 8.5235 23 1 -4.3714 -4.9842 8.3876 24 1 -3.2545 -6.8956 9.3775 25 1 -2.0770 -4.7881 9.1480 26 1 -0.3632 0.0058 1.0276 27 1 -0.3632 0.8871 -0.5189 28 1 -0.3633 -0.8928 -0.5089 29 1 1.6586 2.1315 -0.0004 30 1 4.1196 2.1328 -0.0112 31 1 5.3553 0.0039 -0.0102 32 1 4.1314 -2.1315 0.0012 33 1 1.9411 -4.1868 -1.8990 34 1 3.4114 -3.2089 -1.6738 35 1 3.3865 -4.9118 -1.1557 36 1 2.0258 -5.5952 0.8252 37 1 0.5800 -4.8703 0.0814 38 1 1.2091 -3.4089 2.4151 39 1 0.5399 -4.4947 4.7892 40 1 -0.9055 -3.7686 4.0464 41 1 -2.0336 -5.9769 4.0850 42 1 -0.5877 -6.7023 4.8278 43 1 -3.3741 -7.9841 6.8663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292259266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -71.680818 kcal Electronic energy + Delta-G solvation = -22577.509998 eV Core-core repulsion = 19201.245724 eV Total energy + Delta-G solvation = -3376.264274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70839 -39.11990 -37.92317 -34.77257 -33.41738 -33.12920 -31.91279 -30.82433 -30.18742 -27.08468 -26.83739 -25.08062 -23.60440 -21.75950 -21.57793 -21.02725 -19.53214 -18.43545 -16.96082 -16.44936 -15.95650 -15.93834 -15.57574 -15.22378 -15.05535 -14.71711 -14.39793 -13.95229 -13.62053 -13.40506 -13.31100 -13.00688 -12.82326 -12.51858 -12.44778 -12.31278 -12.12396 -11.96742 -11.59970 -11.40848 -11.24830 -11.12179 -10.91514 -10.86321 -10.57528 -9.92744 -9.64206 -9.16157 -9.08104 -8.99318 -8.78508 -8.34174 -8.29685 -5.93915 -3.98139 1.05685 1.19087 2.87547 3.28865 3.35016 3.40581 3.43188 3.48791 3.53601 4.36061 4.49326 4.50823 4.57673 4.65739 4.73918 4.81471 5.02615 5.04724 5.26459 5.31955 5.33493 5.40977 5.44368 5.53207 5.58018 5.61874 5.64343 5.74466 5.88098 6.03531 6.08979 6.21368 6.26247 6.28454 6.28754 6.55213 6.70015 6.92561 7.19251 7.76897 7.89245 7.89713 8.09806 8.41386 8.80031 9.10550 9.65241 11.17099 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002953 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.776085 B = 9478.712068 C =10356.619524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.157 4.157 5 C -0.088 4.088 6 C -0.208 4.208 7 C 0.131 3.869 8 O -0.301 6.301 9 C 0.072 3.928 10 H 0.080 0.920 11 C -0.178 4.178 12 C 0.126 3.874 13 N -0.741 5.741 14 C 0.511 3.489 15 O -0.536 6.536 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.102 16.579 -16.465 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.175 4.175 5 C -0.106 4.106 6 C -0.227 4.227 7 C 0.086 3.914 8 O -0.214 6.214 9 C 0.015 3.985 10 H 0.097 0.903 11 C -0.235 4.235 12 C 0.002 3.998 13 N -0.396 5.396 14 C 0.299 3.701 15 O -0.411 6.411 16 C -0.170 4.170 17 C 0.000 4.000 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.548 15.547 -16.766 27.101 hybrid contribution 0.133 0.621 1.040 1.218 sum 14.681 16.168 -15.726 26.912 Atomic orbital electron populations 1.20636 0.90319 1.02779 1.02686 1.19340 0.96711 0.90346 1.05206 1.20904 0.94132 0.96838 0.98413 1.21032 0.94247 0.98057 1.04205 1.20919 0.99712 0.91920 0.98045 1.21303 0.93100 0.99494 1.08759 1.18854 0.90362 0.85806 0.96393 1.86188 1.35723 1.11979 1.87536 1.22754 0.94433 0.83543 0.97767 0.90260 1.22308 1.02533 1.02504 0.96185 1.21358 0.98442 0.94966 0.85067 1.46111 1.53971 1.21398 1.18108 1.21559 0.76676 0.84035 0.87809 1.90669 1.56303 1.22295 1.71844 1.21861 1.01359 1.03128 0.90621 1.18897 0.94313 0.92107 0.94716 1.21230 1.30867 1.02540 1.01844 0.92612 1.25028 0.96285 0.94957 0.98143 1.69999 1.36458 1.08629 1.37803 0.86591 0.79152 0.78017 0.84181 1.20669 1.21238 1.19887 0.91055 0.91826 0.90987 0.85508 0.86067 0.85999 0.85308 0.90911 0.91468 0.90483 0.89796 0.90688 0.76780 0.90306 0.90220 0.95815 0.95840 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.79 36.01 0.35 -0.66 16 2 C -0.12 -1.17 5.89 -104.47 -0.62 -1.79 16 3 C -0.08 -0.74 9.70 -39.61 -0.38 -1.12 16 4 C -0.16 -1.27 10.04 -39.56 -0.40 -1.66 16 5 C -0.09 -0.72 10.04 -39.60 -0.40 -1.12 16 6 C -0.21 -1.88 8.24 -39.43 -0.32 -2.21 16 7 C 0.13 1.38 6.57 -39.21 -0.26 1.12 16 8 O -0.30 -3.32 8.59 -19.43 -0.17 -3.49 16 9 C 0.07 0.67 2.31 -26.73 -0.06 0.61 16 10 H 0.08 0.66 6.32 -51.93 -0.33 0.34 16 11 C -0.18 -1.34 9.17 37.16 0.34 -1.00 16 12 C 0.13 1.55 5.37 -4.04 -0.02 1.53 16 13 N -0.74 -10.78 5.45 -60.29 -0.33 -11.11 16 14 C 0.51 10.04 7.83 -10.99 -0.09 9.95 16 15 O -0.54 -12.79 15.98 5.55 0.09 -12.70 16 16 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 17 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 18 C -0.53 -15.14 9.11 -34.44 -0.31 -15.45 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.07 0.75 7.53 -51.93 -0.39 0.35 16 29 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.98 5.43 -52.49 -0.28 0.69 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.48 6.90 -51.93 -0.36 0.12 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.95 8.35 -40.82 -0.34 4.61 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -34.69 359.62 -8.55 -43.23 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.73 Total: 0.95 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.54 Total: -12.16 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.41 Total: -38.10 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.08 Total: -16.19 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.69 -8.55 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292259266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.449 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds