Wall clock time and date at job start Tue Mar 31 2020 07:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38163 * 120.03310 * 2 1 4 4 C 1.38238 * 120.05985 * 180.29900 * 3 2 1 5 5 C 1.38294 * 120.10931 * 359.67662 * 4 3 2 6 6 C 1.38119 * 120.05549 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.02545 * 179.67876 * 2 1 3 8 8 O 1.35903 * 120.05476 * 359.97438 * 7 2 1 9 9 C 1.42898 * 116.99823 * 185.14357 * 8 7 2 10 10 H 1.09003 * 109.47522 * 35.15875 * 9 8 7 11 11 C 1.52998 * 109.47474 * 275.15921 * 9 8 7 12 12 C 1.53008 * 109.47330 * 155.15462 * 9 8 7 13 13 N 1.46498 * 109.46885 * 300.00383 * 12 9 8 14 14 C 1.34780 * 119.99774 * 179.97438 * 13 12 9 15 15 O 1.21284 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99981 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.47270 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.47270 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00065 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00008 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00135 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99936 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46855 * 90.00641 * 22 20 18 24 24 H 1.48506 * 109.47179 * 210.00277 * 22 20 18 25 25 H 1.48500 * 109.47452 * 329.99950 * 22 20 18 26 26 H 1.08993 * 109.46603 * 270.32318 * 1 2 3 27 27 H 1.08998 * 109.46590 * 30.32538 * 1 2 3 28 28 H 1.08998 * 109.47049 * 150.31894 * 1 2 3 29 29 H 1.08005 * 119.96827 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.94928 * 179.69630 * 4 3 2 31 31 H 1.07999 * 119.97244 * 180.02562 * 5 4 3 32 32 H 1.08002 * 120.03006 * 180.02562 * 6 5 4 33 33 H 1.09007 * 109.46512 * 299.99538 * 11 9 8 34 34 H 1.09001 * 109.47174 * 59.99438 * 11 9 8 35 35 H 1.08993 * 109.47356 * 180.02562 * 11 9 8 36 36 H 1.08993 * 109.47351 * 180.02562 * 12 9 8 37 37 H 1.09003 * 109.46481 * 59.99776 * 12 9 8 38 38 H 0.97003 * 120.00636 * 359.97438 * 13 12 9 39 39 H 1.08999 * 109.47365 * 300.00127 * 16 14 13 40 40 H 1.09003 * 109.47574 * 60.00039 * 16 14 13 41 41 H 1.08999 * 109.46900 * 300.00252 * 17 16 14 42 42 H 1.09003 * 109.46584 * 59.99907 * 17 16 14 43 43 H 0.96994 * 119.99927 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1961 0.0000 4 6 3.5810 1.1968 -0.0062 5 6 4.2753 0.0008 -0.0058 6 6 3.5887 -1.1977 0.0004 7 6 2.2012 -1.2010 0.0067 8 8 1.5233 -2.3789 0.0139 9 6 2.2989 -3.5729 0.1347 10 1 3.1531 -3.3872 0.7859 11 6 2.7953 -4.0008 -1.2478 12 6 1.4341 -4.6846 0.7327 13 7 0.9589 -4.2748 2.0564 14 6 0.1740 -5.1010 2.7761 15 8 -0.1384 -6.1838 2.3280 16 6 -0.3144 -4.6798 4.1381 17 6 -1.1793 -5.7913 4.7360 18 6 -1.6671 -5.3704 6.0983 19 1 -1.3879 -4.4067 6.4978 20 6 -2.4700 -6.2156 6.8345 21 7 -2.8096 -7.3894 6.3482 22 14 -3.0742 -5.6941 8.5235 23 1 -4.3714 -4.9842 8.3876 24 1 -3.2545 -6.8956 9.3775 25 1 -2.0770 -4.7881 9.1480 26 1 -0.3632 0.0058 1.0276 27 1 -0.3632 0.8871 -0.5189 28 1 -0.3633 -0.8928 -0.5089 29 1 1.6586 2.1315 -0.0004 30 1 4.1196 2.1328 -0.0112 31 1 5.3553 0.0039 -0.0102 32 1 4.1314 -2.1315 0.0012 33 1 1.9411 -4.1868 -1.8990 34 1 3.4114 -3.2089 -1.6738 35 1 3.3865 -4.9118 -1.1557 36 1 2.0258 -5.5952 0.8252 37 1 0.5800 -4.8703 0.0814 38 1 1.2091 -3.4089 2.4151 39 1 0.5399 -4.4947 4.7892 40 1 -0.9055 -3.7686 4.0464 41 1 -2.0336 -5.9769 4.0850 42 1 -0.5877 -6.7023 4.8278 43 1 -3.3741 -7.9841 6.8663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292259266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:52 Heat of formation + Delta-G solvation = -93.814975 kcal Electronic energy + Delta-G solvation = -22578.469807 eV Core-core repulsion = 19201.245724 eV Total energy + Delta-G solvation = -3377.224083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47176 -40.57816 -38.71807 -36.00110 -35.52200 -33.91269 -33.17377 -32.45963 -30.83584 -28.45493 -27.64814 -26.67396 -24.38155 -23.45323 -22.40761 -21.90561 -21.06441 -19.15359 -18.81711 -17.66592 -17.33009 -16.80873 -16.62042 -16.45884 -16.41816 -16.05689 -15.53323 -14.96305 -14.78148 -14.43255 -14.29525 -14.07969 -14.02717 -13.77433 -13.49179 -13.24602 -13.15439 -13.06612 -12.98822 -12.81035 -12.48045 -12.27122 -12.09927 -11.95225 -11.92691 -11.64448 -11.55782 -11.30939 -10.75679 -10.57121 -10.12093 -9.72238 -9.03276 -8.18056 -6.32182 0.41568 0.53040 1.42084 1.45025 1.55957 1.69246 2.11293 2.23975 2.44707 2.85460 3.14810 3.55059 3.82319 3.90213 3.97647 4.01374 4.08591 4.24381 4.33952 4.44875 4.48155 4.50060 4.56252 4.64747 4.69813 4.76870 4.82066 4.84040 4.86006 5.01755 5.06637 5.18173 5.34323 5.40861 5.45206 5.50672 5.57329 5.62966 5.65109 5.85256 5.92957 6.17740 6.48942 6.54220 6.86061 7.30474 7.38079 8.94701 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002953 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.776085 B = 9478.712068 C =10356.619524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.137 4.137 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.213 4.213 7 C 0.111 3.889 8 O -0.319 6.319 9 C 0.079 3.921 10 H 0.096 0.904 11 C -0.173 4.173 12 C 0.123 3.877 13 N -0.717 5.717 14 C 0.512 3.488 15 O -0.587 6.587 16 C -0.120 4.120 17 C 0.043 3.957 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.975 3.025 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.255 1.255 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.413 0.587 39 H 0.104 0.896 40 H 0.100 0.900 41 H -0.018 1.018 42 H -0.016 1.016 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.929 19.262 -15.906 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.109 4.109 4 C -0.178 4.178 5 C -0.110 4.110 6 C -0.232 4.232 7 C 0.066 3.934 8 O -0.233 6.233 9 C 0.023 3.977 10 H 0.114 0.886 11 C -0.230 4.230 12 C -0.001 4.001 13 N -0.370 5.370 14 C 0.301 3.699 15 O -0.467 6.467 16 C -0.160 4.160 17 C 0.005 3.995 18 C -0.582 4.582 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.179 1.179 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.249 0.751 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.000 1.000 42 H 0.003 0.997 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.418 18.298 -16.228 29.457 hybrid contribution -0.386 -0.166 0.788 0.893 sum 16.032 18.132 -15.440 28.709 Atomic orbital electron populations 1.20597 0.90474 1.02718 1.02344 1.19567 0.96968 0.91021 1.06206 1.21177 0.94748 0.97012 0.97926 1.21379 0.94162 0.99129 1.03137 1.21272 1.01006 0.91608 0.97132 1.21508 0.92568 1.00591 1.08494 1.19061 0.91149 0.85544 0.97655 1.86153 1.36608 1.12562 1.87975 1.22713 0.93766 0.82298 0.98946 0.88626 1.22284 1.02485 1.03520 0.94745 1.21527 0.98465 0.96703 0.83383 1.45830 1.51848 1.20956 1.18413 1.21291 0.77092 0.83769 0.87755 1.90654 1.58608 1.24589 1.72853 1.21634 1.01489 1.01192 0.91649 1.18682 0.93340 0.92966 0.94491 1.21713 1.30820 1.03302 1.02328 0.90695 1.26147 0.96405 0.94783 1.03129 1.70177 1.37406 1.10242 1.39945 0.85311 0.78986 0.77819 0.78067 1.19717 1.21094 1.17898 0.91543 0.90314 0.92594 0.83812 0.83847 0.83719 0.84000 0.91740 0.90548 0.88879 0.89213 0.92208 0.75110 0.87773 0.88135 0.99991 0.99745 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.79 71.24 0.70 -1.23 16 2 C -0.14 -2.63 5.89 -19.76 -0.12 -2.75 16 3 C -0.09 -1.40 9.70 22.25 0.22 -1.18 16 4 C -0.16 -2.14 10.04 22.28 0.22 -1.92 16 5 C -0.09 -1.25 10.04 22.25 0.22 -1.02 16 6 C -0.21 -3.38 8.24 22.37 0.18 -3.19 16 7 C 0.11 2.19 6.57 22.51 0.15 2.34 16 8 O -0.32 -6.79 8.59 -92.45 -0.79 -7.58 16 9 C 0.08 1.37 2.31 30.60 0.07 1.44 16 10 H 0.10 1.36 6.32 -2.39 -0.02 1.35 16 11 C -0.17 -2.33 9.17 71.98 0.66 -1.67 16 12 C 0.12 2.96 5.37 86.38 0.46 3.42 16 13 N -0.72 -20.34 5.45 -463.05 -2.52 -22.87 16 14 C 0.51 20.40 7.83 87.65 0.69 21.08 16 15 O -0.59 -29.25 15.98 -3.04 -0.05 -29.30 16 16 C -0.12 -4.97 5.64 29.85 0.17 -4.80 16 17 C 0.04 2.44 4.26 29.85 0.13 2.56 16 18 C -0.54 -31.47 9.11 25.60 0.23 -31.23 16 19 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 20 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 21 N -0.94 -60.16 13.29 21.45 0.28 -59.87 16 22 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 28 H 0.05 1.18 7.53 -2.39 -0.02 1.16 16 29 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.14 1.75 5.43 -2.91 -0.02 1.73 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.08 0.92 6.90 -2.39 -0.02 0.90 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.41 9.55 8.35 -92.71 -0.77 8.77 16 39 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 40 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 41 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 42 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -78.25 359.62 3.62 -74.63 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.22 Total: 16.32 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 4.45 Total: -18.12 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.24 Total: -82.74 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.84 Total: -36.88 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -78.25 3.62 -74.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292259266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.184 kcal (2) G-P(sol) polarization free energy of solvation -78.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds