Wall clock time and date at job start Tue Mar 31 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38172 * 120.02474 * 2 1 4 4 C 1.38243 * 120.05350 * 180.02562 * 3 2 1 5 5 C 1.38289 * 120.11172 * 0.02562 * 4 3 2 6 6 C 1.38119 * 120.05576 * 359.67887 * 5 4 3 7 7 C 1.38708 * 120.02952 * 180.02562 * 2 1 3 8 8 O 1.35899 * 120.05348 * 359.97438 * 7 2 1 9 9 C 1.42906 * 116.99479 * 174.78665 * 8 7 2 10 10 H 1.08990 * 109.47580 * 324.98242 * 9 8 7 11 11 C 1.53005 * 109.46939 * 84.98245 * 9 8 7 12 12 C 1.53003 * 109.46744 * 204.98007 * 9 8 7 13 13 N 1.46497 * 109.47417 * 65.00111 * 12 9 8 14 14 C 1.34769 * 120.00234 * 179.72381 * 13 12 9 15 15 O 1.21279 * 120.00274 * 0.27571 * 14 13 12 16 16 C 1.50702 * 119.99918 * 180.27856 * 14 13 12 17 17 C 1.53003 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47042 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00050 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99633 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00121 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99473 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47011 * 60.00644 * 22 20 18 24 24 H 1.48507 * 109.46931 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47754 * 300.00287 * 22 20 18 26 26 H 1.08999 * 109.47279 * 269.97365 * 1 2 3 27 27 H 1.09006 * 109.47521 * 29.97730 * 1 2 3 28 28 H 1.09007 * 109.46974 * 149.97561 * 1 2 3 29 29 H 1.07996 * 119.96948 * 0.04800 * 3 2 1 30 30 H 1.08003 * 119.94399 * 180.02562 * 4 3 2 31 31 H 1.07999 * 119.96931 * 179.97438 * 5 4 3 32 32 H 1.08004 * 120.03039 * 180.31895 * 6 5 4 33 33 H 1.09004 * 109.46854 * 59.99741 * 11 9 8 34 34 H 1.09000 * 109.46728 * 179.97438 * 11 9 8 35 35 H 1.09000 * 109.47144 * 299.99618 * 11 9 8 36 36 H 1.09004 * 109.46914 * 304.99954 * 12 9 8 37 37 H 1.09002 * 109.46831 * 185.00738 * 12 9 8 38 38 H 0.97005 * 119.99278 * 0.02562 * 13 12 9 39 39 H 1.09000 * 109.47164 * 299.99808 * 16 14 13 40 40 H 1.08999 * 109.47226 * 59.99501 * 16 14 13 41 41 H 1.09000 * 109.47285 * 300.00098 * 17 16 14 42 42 H 1.09008 * 109.46672 * 59.99946 * 17 16 14 43 43 H 0.97005 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.2752 0.0011 -0.0016 6 6 3.5887 -1.1974 0.0046 7 6 2.2011 -1.2009 -0.0005 8 8 1.5234 -2.3788 -0.0005 9 6 2.2989 -3.5735 -0.1168 10 1 3.1531 -3.3902 -0.7684 11 6 2.7949 -3.9962 1.2675 12 6 1.4340 -4.6871 -0.7108 13 7 1.0576 -4.3344 -2.0819 14 6 0.2953 -5.1751 -2.8089 15 8 -0.0832 -6.2214 -2.3262 16 6 -0.0867 -4.8152 -4.2215 17 6 -0.9464 -5.9317 -4.8176 18 6 -1.3290 -5.5714 -6.2301 19 1 -0.9922 -4.6396 -6.6597 20 6 -2.1089 -6.4315 -6.9737 21 7 -2.5194 -7.5659 -6.4503 22 14 -2.5824 -5.9852 -8.7247 23 1 -1.3540 -5.8173 -9.5421 24 1 -3.4170 -7.0688 -9.3032 25 1 -3.3520 -4.7153 -8.7211 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6583 2.1315 0.0008 30 1 4.1194 2.1331 -0.0001 31 1 5.3551 0.0043 -0.0024 32 1 4.1314 -2.1312 0.0089 33 1 1.9406 -4.1795 1.9192 34 1 3.3861 -4.9077 1.1788 35 1 3.4110 -3.2028 1.6906 36 1 0.5347 -4.8097 -0.1072 37 1 1.9973 -5.6203 -0.7171 38 1 1.3607 -3.4978 -2.4680 39 1 -0.6517 -3.8831 -4.2188 40 1 0.8149 -4.6917 -4.8215 41 1 -0.3810 -6.8635 -4.8203 42 1 -1.8481 -6.0555 -4.2176 43 1 -3.0678 -8.1712 -6.9736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292259275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:56 Heat of formation + Delta-G solvation = -71.717135 kcal Electronic energy + Delta-G solvation = -22552.274865 eV Core-core repulsion = 19176.009016 eV Total energy + Delta-G solvation = -3376.265849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.70655 -39.12737 -37.92474 -34.78859 -33.41946 -33.13112 -31.91010 -30.82632 -30.18687 -27.09160 -26.83561 -25.08155 -23.60468 -21.76909 -21.57152 -21.04031 -19.54209 -18.42962 -16.96382 -16.44340 -15.95849 -15.94786 -15.57093 -15.22887 -15.06211 -14.72153 -14.40400 -13.92203 -13.65039 -13.41749 -13.30152 -13.03148 -12.82991 -12.52445 -12.41442 -12.30469 -12.12504 -11.96602 -11.61066 -11.41138 -11.25350 -11.12661 -10.89928 -10.86428 -10.59717 -9.92538 -9.64435 -9.16988 -9.08246 -9.00109 -8.79597 -8.34422 -8.29570 -5.93834 -3.98173 1.05486 1.19146 2.88402 3.28287 3.36139 3.40291 3.41887 3.48126 3.52495 4.35781 4.49279 4.50739 4.57558 4.66374 4.73515 4.81361 5.02428 5.04712 5.26493 5.32007 5.33279 5.40954 5.44949 5.52738 5.55152 5.61928 5.64333 5.74215 5.88082 6.03418 6.08971 6.21489 6.25770 6.28027 6.28738 6.55287 6.69016 6.92150 7.19303 7.76469 7.88500 7.89094 8.09709 8.41224 8.79354 9.10273 9.65141 11.17129 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019575 B = 0.002920 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.033499 B = 9586.797299 C =10412.607808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.157 4.157 5 C -0.088 4.088 6 C -0.208 4.208 7 C 0.132 3.868 8 O -0.300 6.300 9 C 0.071 3.929 10 H 0.080 0.920 11 C -0.177 4.177 12 C 0.125 3.875 13 N -0.742 5.742 14 C 0.511 3.489 15 O -0.535 6.535 16 C -0.130 4.130 17 C 0.038 3.962 18 C -0.528 4.528 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.398 0.602 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.418 16.959 16.722 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.106 4.106 6 C -0.227 4.227 7 C 0.086 3.914 8 O -0.214 6.214 9 C 0.015 3.985 10 H 0.097 0.903 11 C -0.235 4.235 12 C 0.001 3.999 13 N -0.397 5.397 14 C 0.299 3.701 15 O -0.411 6.411 16 C -0.170 4.170 17 C 0.000 4.000 18 C -0.566 4.566 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.232 0.768 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.802 15.952 17.052 27.124 hybrid contribution 0.240 0.580 -1.085 1.253 sum 14.042 16.532 15.967 26.934 Atomic orbital electron populations 1.20637 0.90344 1.03148 1.02294 1.19335 0.96703 0.90357 1.05250 1.20908 0.94134 0.96830 0.98396 1.21034 0.94244 0.98061 1.04217 1.20919 0.99718 0.91917 0.98014 1.21305 0.93095 0.99496 1.08776 1.18853 0.90367 0.85815 0.96356 1.86198 1.35752 1.11948 1.87522 1.22751 0.94414 0.83541 0.97803 0.90253 1.22303 1.02519 1.02515 0.96156 1.21351 0.99345 0.95310 0.83875 1.46134 1.55509 1.24040 1.13998 1.21558 0.76409 0.83174 0.88931 1.90668 1.53205 1.24515 1.72669 1.21865 1.02008 1.03384 0.89724 1.18894 0.94474 0.92051 0.94579 1.21195 1.32207 1.04838 0.98352 0.92661 1.25023 0.96039 0.95028 0.98290 1.69987 1.35869 1.10012 1.37011 0.86651 0.78483 0.77978 0.84799 1.20262 1.21293 1.20235 0.91470 0.91681 0.90755 0.85512 0.86064 0.85990 0.85304 0.90902 0.90484 0.91473 0.90609 0.89752 0.76838 0.90216 0.90300 0.95846 0.95815 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.79 36.00 0.35 -0.66 16 2 C -0.12 -1.18 5.89 -104.47 -0.62 -1.79 16 3 C -0.08 -0.73 9.70 -39.60 -0.38 -1.12 16 4 C -0.16 -1.27 10.04 -39.56 -0.40 -1.67 16 5 C -0.09 -0.72 10.04 -39.61 -0.40 -1.11 16 6 C -0.21 -1.89 8.24 -39.43 -0.33 -2.21 16 7 C 0.13 1.39 6.57 -39.22 -0.26 1.13 16 8 O -0.30 -3.33 8.79 -19.42 -0.17 -3.51 16 9 C 0.07 0.67 2.26 -26.73 -0.06 0.61 16 10 H 0.08 0.67 6.31 -51.93 -0.33 0.34 16 11 C -0.18 -1.34 9.17 37.16 0.34 -1.00 16 12 C 0.13 1.54 5.34 -4.04 -0.02 1.52 16 13 N -0.74 -10.74 5.50 -60.29 -0.33 -11.07 16 14 C 0.51 10.02 7.83 -10.99 -0.09 9.93 16 15 O -0.54 -12.76 15.98 5.56 0.09 -12.67 16 16 C -0.13 -2.70 5.64 -27.88 -0.16 -2.85 16 17 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 18 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.07 0.80 7.53 -51.92 -0.39 0.41 16 29 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.98 5.43 -52.48 -0.28 0.69 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.48 6.91 -51.93 -0.36 0.12 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.87 8.47 -40.82 -0.35 4.53 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -34.68 359.93 -8.55 -43.23 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.74 Total: 0.92 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -2.54 Total: -12.20 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.40 Total: -38.04 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.08 Total: -16.18 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.68 -8.55 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292259275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.489 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds