Wall clock time and date at job start Tue Mar 31 2020 07:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38172 * 120.02474 * 2 1 4 4 C 1.38243 * 120.05350 * 180.02562 * 3 2 1 5 5 C 1.38289 * 120.11172 * 0.02562 * 4 3 2 6 6 C 1.38119 * 120.05576 * 359.67887 * 5 4 3 7 7 C 1.38708 * 120.02952 * 180.02562 * 2 1 3 8 8 O 1.35899 * 120.05348 * 359.97438 * 7 2 1 9 9 C 1.42906 * 116.99479 * 174.78665 * 8 7 2 10 10 H 1.08990 * 109.47580 * 324.98242 * 9 8 7 11 11 C 1.53005 * 109.46939 * 84.98245 * 9 8 7 12 12 C 1.53003 * 109.46744 * 204.98007 * 9 8 7 13 13 N 1.46497 * 109.47417 * 65.00111 * 12 9 8 14 14 C 1.34769 * 120.00234 * 179.72381 * 13 12 9 15 15 O 1.21279 * 120.00274 * 0.27571 * 14 13 12 16 16 C 1.50702 * 119.99918 * 180.27856 * 14 13 12 17 17 C 1.53003 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47042 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00050 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99633 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00121 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99473 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47011 * 60.00644 * 22 20 18 24 24 H 1.48507 * 109.46931 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47754 * 300.00287 * 22 20 18 26 26 H 1.08999 * 109.47279 * 269.97365 * 1 2 3 27 27 H 1.09006 * 109.47521 * 29.97730 * 1 2 3 28 28 H 1.09007 * 109.46974 * 149.97561 * 1 2 3 29 29 H 1.07996 * 119.96948 * 0.04800 * 3 2 1 30 30 H 1.08003 * 119.94399 * 180.02562 * 4 3 2 31 31 H 1.07999 * 119.96931 * 179.97438 * 5 4 3 32 32 H 1.08004 * 120.03039 * 180.31895 * 6 5 4 33 33 H 1.09004 * 109.46854 * 59.99741 * 11 9 8 34 34 H 1.09000 * 109.46728 * 179.97438 * 11 9 8 35 35 H 1.09000 * 109.47144 * 299.99618 * 11 9 8 36 36 H 1.09004 * 109.46914 * 304.99954 * 12 9 8 37 37 H 1.09002 * 109.46831 * 185.00738 * 12 9 8 38 38 H 0.97005 * 119.99278 * 0.02562 * 13 12 9 39 39 H 1.09000 * 109.47164 * 299.99808 * 16 14 13 40 40 H 1.08999 * 109.47226 * 59.99501 * 16 14 13 41 41 H 1.09000 * 109.47285 * 300.00098 * 17 16 14 42 42 H 1.09008 * 109.46672 * 59.99946 * 17 16 14 43 43 H 0.97005 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.2752 0.0011 -0.0016 6 6 3.5887 -1.1974 0.0046 7 6 2.2011 -1.2009 -0.0005 8 8 1.5234 -2.3788 -0.0005 9 6 2.2989 -3.5735 -0.1168 10 1 3.1531 -3.3902 -0.7684 11 6 2.7949 -3.9962 1.2675 12 6 1.4340 -4.6871 -0.7108 13 7 1.0576 -4.3344 -2.0819 14 6 0.2953 -5.1751 -2.8089 15 8 -0.0832 -6.2214 -2.3262 16 6 -0.0867 -4.8152 -4.2215 17 6 -0.9464 -5.9317 -4.8176 18 6 -1.3290 -5.5714 -6.2301 19 1 -0.9922 -4.6396 -6.6597 20 6 -2.1089 -6.4315 -6.9737 21 7 -2.5194 -7.5659 -6.4503 22 14 -2.5824 -5.9852 -8.7247 23 1 -1.3540 -5.8173 -9.5421 24 1 -3.4170 -7.0688 -9.3032 25 1 -3.3520 -4.7153 -8.7211 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6583 2.1315 0.0008 30 1 4.1194 2.1331 -0.0001 31 1 5.3551 0.0043 -0.0024 32 1 4.1314 -2.1312 0.0089 33 1 1.9406 -4.1795 1.9192 34 1 3.3861 -4.9077 1.1788 35 1 3.4110 -3.2028 1.6906 36 1 0.5347 -4.8097 -0.1072 37 1 1.9973 -5.6203 -0.7171 38 1 1.3607 -3.4978 -2.4680 39 1 -0.6517 -3.8831 -4.2188 40 1 0.8149 -4.6917 -4.8215 41 1 -0.3810 -6.8635 -4.8203 42 1 -1.8481 -6.0555 -4.2176 43 1 -3.0678 -8.1712 -6.9736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292259275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:55 Heat of formation + Delta-G solvation = -93.916352 kcal Electronic energy + Delta-G solvation = -22553.237495 eV Core-core repulsion = 19176.009016 eV Total energy + Delta-G solvation = -3377.228479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47021 -40.58461 -38.71824 -36.01609 -35.52427 -33.91327 -33.17503 -32.45630 -30.83602 -28.45584 -27.65257 -26.67304 -24.38352 -23.45275 -22.41342 -21.91887 -21.06561 -19.15475 -18.81181 -17.66399 -17.32597 -16.81137 -16.63414 -16.46071 -16.43094 -16.04449 -15.53780 -14.96972 -14.76463 -14.39815 -14.31616 -14.11117 -14.04004 -13.76019 -13.50678 -13.25324 -13.16573 -13.05614 -12.95953 -12.77325 -12.51631 -12.28817 -12.10266 -11.95607 -11.91885 -11.64635 -11.55975 -11.32709 -10.75768 -10.56317 -10.12947 -9.72323 -9.03574 -8.17871 -6.32141 0.41342 0.53015 1.42027 1.46761 1.54480 1.69059 2.13858 2.21217 2.44695 2.85092 3.14871 3.54679 3.82166 3.90562 3.97588 4.00728 4.08384 4.24175 4.32987 4.44754 4.48159 4.50145 4.56279 4.64413 4.69797 4.76880 4.81277 4.83916 4.85285 5.01644 5.06559 5.18074 5.33922 5.40481 5.45116 5.50415 5.57173 5.62926 5.64949 5.85161 5.92848 6.17686 6.48926 6.53720 6.85886 7.30170 7.38086 8.94656 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019575 B = 0.002920 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.033499 B = 9586.797299 C =10412.607808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.213 4.213 7 C 0.111 3.889 8 O -0.319 6.319 9 C 0.079 3.921 10 H 0.096 0.904 11 C -0.172 4.172 12 C 0.123 3.877 13 N -0.718 5.718 14 C 0.513 3.487 15 O -0.587 6.587 16 C -0.120 4.120 17 C 0.043 3.957 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.287 1.287 25 H -0.263 1.263 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.413 0.587 39 H 0.100 0.900 40 H 0.105 0.895 41 H -0.016 1.016 42 H -0.019 1.019 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.373 19.594 16.101 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.108 4.108 4 C -0.178 4.178 5 C -0.110 4.110 6 C -0.232 4.232 7 C 0.066 3.934 8 O -0.233 6.233 9 C 0.023 3.977 10 H 0.114 0.886 11 C -0.230 4.230 12 C -0.001 4.001 13 N -0.371 5.371 14 C 0.301 3.699 15 O -0.467 6.467 16 C -0.160 4.160 17 C 0.005 3.995 18 C -0.583 4.583 19 H 0.093 0.907 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.213 1.213 25 H -0.187 1.187 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.249 0.751 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.003 0.997 42 H 0.000 1.000 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.802 18.656 16.450 29.468 hybrid contribution -0.324 -0.187 -0.812 0.894 sum 15.477 18.469 15.638 28.726 Atomic orbital electron populations 1.20596 0.90499 1.02736 1.02290 1.19567 0.96967 0.91044 1.06248 1.21178 0.94753 0.96996 0.97918 1.21382 0.94155 0.99137 1.03136 1.21273 1.01014 0.91603 0.97106 1.21508 0.92548 1.00597 1.08505 1.19063 0.91165 0.85551 0.97642 1.86164 1.36650 1.12542 1.87966 1.22710 0.93745 0.82282 0.98998 0.88614 1.22280 1.02484 1.03530 0.94707 1.21512 0.99350 0.97101 0.82134 1.45850 1.53348 1.23410 1.14513 1.21291 0.76767 0.82998 0.88839 1.90654 1.55609 1.26861 1.73560 1.21638 1.02174 1.01436 0.90725 1.18679 0.93348 0.92891 0.94535 1.21689 1.32149 1.05567 0.98917 0.90686 1.26144 0.95864 0.94720 1.03704 1.70170 1.36810 1.11518 1.39243 0.85367 0.78618 0.77967 0.78247 1.18631 1.21262 1.18737 0.91331 0.90439 0.92724 0.83809 0.83832 0.83702 0.83992 0.91699 0.88893 0.90546 0.92225 0.89176 0.75107 0.88145 0.87720 0.99749 1.00013 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 9.79 71.24 0.70 -1.24 16 2 C -0.14 -2.65 5.89 -19.77 -0.12 -2.77 16 3 C -0.09 -1.40 9.70 22.26 0.22 -1.18 16 4 C -0.16 -2.14 10.04 22.28 0.22 -1.92 16 5 C -0.09 -1.24 10.04 22.25 0.22 -1.02 16 6 C -0.21 -3.38 8.24 22.37 0.18 -3.20 16 7 C 0.11 2.20 6.57 22.51 0.15 2.35 16 8 O -0.32 -6.83 8.79 -92.42 -0.81 -7.65 16 9 C 0.08 1.37 2.26 30.60 0.07 1.44 16 10 H 0.10 1.37 6.31 -2.39 -0.02 1.35 16 11 C -0.17 -2.33 9.17 71.98 0.66 -1.67 16 12 C 0.12 2.96 5.34 86.38 0.46 3.42 16 13 N -0.72 -20.26 5.50 -463.06 -2.55 -22.80 16 14 C 0.51 20.36 7.83 87.66 0.69 21.05 16 15 O -0.59 -29.24 15.98 -3.03 -0.05 -29.29 16 16 C -0.12 -4.96 5.64 29.85 0.17 -4.80 16 17 C 0.04 2.45 4.26 29.85 0.13 2.58 16 18 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 19 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 20 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 21 N -0.94 -60.15 13.29 21.45 0.28 -59.86 16 22 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.17 8.09 -2.38 -0.02 1.15 16 28 H 0.05 1.20 7.53 -2.38 -0.02 1.18 16 29 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 31 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.14 1.75 5.43 -2.91 -0.02 1.74 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.92 6.91 -2.39 -0.02 0.90 16 36 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.41 9.39 8.47 -92.70 -0.79 8.60 16 39 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 41 H -0.02 -1.02 8.10 -2.39 -0.02 -1.03 16 42 H -0.02 -1.19 8.10 -2.38 -0.02 -1.21 16 43 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -78.34 359.93 3.56 -74.78 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.21 Total: 16.28 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.44 Total: -18.22 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.26 Total: -82.67 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.86 Total: -36.93 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -78.34 3.56 -74.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292259275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.134 kcal (2) G-P(sol) polarization free energy of solvation -78.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds