Wall clock time and date at job start Tue Mar 31 2020 06:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00216 * 2 1 4 4 C 1.38751 * 120.05412 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94641 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.97641 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47185 * 270.02660 * 6 5 4 8 8 N 1.46496 * 109.47419 * 179.97438 * 7 6 5 9 9 C 1.34778 * 120.00434 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99783 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00200 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47185 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47185 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99839 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00279 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00283 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99629 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46879 * 90.00300 * 17 15 13 19 19 H 1.48504 * 109.47135 * 210.00111 * 17 15 13 20 20 H 1.48502 * 109.47503 * 330.00307 * 17 15 13 21 21 C 1.38291 * 120.05218 * 0.02562 * 5 4 3 22 22 C 1.38241 * 120.11180 * 0.25948 * 21 5 4 23 23 C 1.38173 * 120.05599 * 359.44059 * 22 21 5 24 24 C 1.50697 * 120.02781 * 180.25768 * 23 22 21 25 25 H 1.09001 * 109.47587 * 299.99927 * 1 2 3 26 26 H 1.09007 * 109.47002 * 59.99909 * 1 2 3 27 27 H 1.09004 * 109.47516 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.02525 * 0.04297 * 4 3 2 29 29 H 1.09003 * 109.47221 * 30.01967 * 6 5 4 30 30 H 1.08992 * 109.47693 * 150.01967 * 6 5 4 31 31 H 1.09003 * 109.46475 * 299.99763 * 7 6 5 32 32 H 1.08993 * 109.47508 * 59.99644 * 7 6 5 33 33 H 0.97001 * 119.99654 * 359.97438 * 8 7 6 34 34 H 1.09008 * 109.47128 * 300.00213 * 11 9 8 35 35 H 1.08993 * 109.47188 * 59.99871 * 11 9 8 36 36 H 1.09003 * 109.46475 * 299.99763 * 12 11 9 37 37 H 1.08993 * 109.47508 * 59.99644 * 12 11 9 38 38 H 0.96998 * 119.99897 * 180.02562 * 16 15 13 39 39 H 1.08002 * 119.93997 * 179.97438 * 21 5 4 40 40 H 1.08001 * 119.97222 * 179.70461 * 22 21 5 41 41 H 1.08994 * 109.46977 * 270.32127 * 24 23 22 42 42 H 1.09001 * 109.47211 * 30.31825 * 24 23 22 43 43 H 1.08997 * 109.46993 * 150.31913 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 1.1020 4.8698 0.0012 7 6 0.8226 5.2979 -1.4409 8 7 0.0261 6.5273 -1.4399 9 6 -0.3416 7.0932 -2.6065 10 8 -0.0126 6.5848 -3.6573 11 6 -1.1605 8.3583 -2.6054 12 6 -1.4400 8.7862 -4.0475 13 6 -2.2583 10.0516 -4.0463 14 1 -2.5503 10.5050 -3.1105 15 6 -2.6344 10.6306 -5.2398 16 7 -3.3481 11.7352 -5.2388 17 14 -2.1288 9.8467 -6.8582 18 1 -3.1702 8.8783 -7.2858 19 1 -1.9784 10.9010 -7.8932 20 1 -0.8359 9.1377 -6.6824 21 6 3.3019 3.6757 -0.0016 22 6 4.0559 2.5171 -0.0081 23 6 3.4311 1.2847 -0.0013 24 6 4.2537 0.0221 -0.0025 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2127 2.3203 0.0017 29 1 0.1582 4.6913 0.5164 30 1 1.6523 5.6585 0.5141 31 1 1.7664 5.4764 -1.9562 32 1 0.2722 4.5093 -1.9539 33 1 -0.2367 6.9342 -0.5994 34 1 -2.1045 8.1796 -2.0903 35 1 -0.6102 9.1468 -2.0921 36 1 -0.4962 8.9648 -4.5628 37 1 -1.9904 7.9976 -4.5604 38 1 -3.6130 12.1422 -6.0784 39 1 3.7922 4.6381 -0.0024 40 1 5.1344 2.5752 -0.0142 41 1 4.4511 -0.2819 -1.0304 42 1 5.1982 0.2033 0.5105 43 1 3.7068 -0.7683 0.5115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292264132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:09 Heat of formation + Delta-G solvation = -74.572470 kcal Electronic energy + Delta-G solvation = -21931.093042 eV Core-core repulsion = 18554.703377 eV Total energy + Delta-G solvation = -3376.389666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63068 -39.27654 -38.00302 -35.56823 -33.52526 -33.46194 -31.36819 -30.47412 -30.15547 -27.91759 -26.85277 -25.49354 -23.06552 -22.55651 -21.17026 -21.16760 -19.66405 -17.81149 -17.16007 -16.73644 -16.13330 -15.92486 -15.78265 -15.72603 -15.44791 -14.59771 -14.34243 -14.08183 -13.88768 -13.82117 -13.31830 -13.03947 -12.74748 -12.64286 -12.54152 -12.43622 -12.28253 -12.02666 -11.69419 -11.41507 -11.35151 -11.21877 -11.13156 -10.94468 -10.15557 -10.03715 -9.77553 -9.25786 -9.16773 -9.01390 -8.87488 -8.50056 -8.36525 -6.02471 -4.01130 0.97883 1.15292 2.94753 3.13922 3.32315 3.38601 3.45085 3.53638 3.56524 4.39905 4.46313 4.51696 4.68803 4.73479 4.79444 4.81845 4.85360 4.94884 5.12252 5.16518 5.27427 5.30747 5.33055 5.35689 5.40282 5.45419 5.58171 5.71429 5.89101 5.93296 6.01559 6.09344 6.10851 6.17878 6.32464 6.48851 6.61489 6.70809 7.06568 7.37580 7.44632 7.76315 7.81155 8.50804 8.66880 9.00610 9.60694 11.10323 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028632 B = 0.002365 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.706568 B =11836.231492 C =11969.490190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.126 3.874 4 C -0.198 4.198 5 C -0.045 4.045 6 C -0.092 4.092 7 C 0.126 3.874 8 N -0.744 5.744 9 C 0.509 3.491 10 O -0.541 6.541 11 C -0.122 4.122 12 C 0.001 3.999 13 C -0.525 4.525 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.146 4.146 22 C -0.082 4.082 23 C -0.122 4.122 24 C -0.104 4.104 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.399 0.601 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.730 -23.233 16.389 31.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.081 3.919 4 C -0.217 4.217 5 C -0.045 4.045 6 C -0.130 4.130 7 C 0.002 3.998 8 N -0.398 5.398 9 C 0.297 3.703 10 O -0.416 6.416 11 C -0.162 4.162 12 C -0.037 4.037 13 C -0.563 4.563 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.164 4.164 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.147 0.853 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.233 0.767 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.963 -23.671 15.482 31.113 hybrid contribution -0.276 0.053 -0.447 0.528 sum 12.687 -23.619 15.035 30.738 Atomic orbital electron populations 1.23078 0.78289 1.03977 1.01571 1.86046 1.21382 1.26794 1.88706 1.18799 0.91776 0.84164 0.97136 1.21122 1.00055 0.91744 1.08738 1.19450 0.93748 0.93733 0.97594 1.20811 1.00057 0.95022 0.97109 1.21192 0.96135 0.87178 0.95342 1.46178 1.56732 1.27551 1.09326 1.21548 0.79441 0.86484 0.82780 1.90657 1.55222 1.64309 1.31453 1.21666 0.98769 0.92502 1.03255 1.19370 0.97414 0.96631 0.90275 1.21118 1.32977 1.07607 0.94559 0.90931 1.24978 0.94441 0.94627 0.99253 1.69911 1.37842 1.19525 1.26985 0.86792 0.80276 0.79089 0.83374 1.20258 1.21444 1.18517 1.20983 0.93111 0.98662 1.03682 1.20875 0.99836 0.90973 0.98292 1.19273 0.90625 0.96289 1.06060 1.20595 0.98649 0.94549 1.02286 0.92626 0.92445 0.88210 0.85347 0.90268 0.89931 0.91565 0.91806 0.76743 0.89643 0.89575 0.95828 0.96301 0.92728 0.85664 0.85312 0.91428 0.91733 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.01 9.54 -19.44 -0.19 -3.20 16 3 C 0.13 1.28 6.66 -39.22 -0.26 1.02 16 4 C -0.20 -1.90 8.69 -39.43 -0.34 -2.25 16 5 C -0.04 -0.42 5.13 -104.65 -0.54 -0.96 16 6 C -0.09 -0.78 5.46 -27.88 -0.15 -0.93 16 7 C 0.13 1.49 5.66 -4.04 -0.02 1.47 16 8 N -0.74 -9.74 5.56 -60.30 -0.33 -10.07 16 9 C 0.51 9.33 7.83 -10.99 -0.09 9.24 16 10 O -0.54 -12.24 15.98 5.56 0.09 -12.15 16 11 C -0.12 -2.36 5.64 -27.88 -0.16 -2.52 16 12 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 13 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 14 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 17 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 21 C -0.15 -1.32 9.70 -39.56 -0.38 -1.71 16 22 C -0.08 -0.71 9.70 -39.60 -0.38 -1.10 16 23 C -0.12 -1.16 5.89 -104.47 -0.62 -1.77 16 24 C -0.10 -0.78 9.79 36.00 0.35 -0.43 16 25 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 26 H 0.06 0.36 7.66 -51.92 -0.40 -0.04 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 29 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 3.92 8.47 -40.82 -0.35 3.57 16 34 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 43 H 0.07 0.53 7.53 -51.93 -0.39 0.14 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -35.55 359.51 -7.88 -43.44 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.85 Total: -1.84 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.12 Total: -12.35 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.44 Total: -37.43 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.10 Total: -15.34 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.55 -7.88 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292264132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.134 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds