Wall clock time and date at job start Tue Mar 31 2020 07:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99885 * 2 1 4 4 N 1.46498 * 109.46784 * 125.00102 * 3 2 1 5 5 C 1.46504 * 120.00184 * 274.32639 * 4 3 2 6 6 C 1.50698 * 109.47513 * 273.85260 * 5 4 3 7 7 H 1.07996 * 119.99806 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99921 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00026 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99702 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47234 * 89.99847 * 10 8 6 12 12 H 1.48499 * 109.46832 * 210.00481 * 10 8 6 13 13 H 1.48501 * 109.47001 * 329.99871 * 10 8 6 14 14 C 1.34777 * 120.00246 * 94.33265 * 4 3 2 15 15 O 1.21612 * 119.99792 * 3.93531 * 14 4 3 16 16 C 1.47377 * 120.00390 * 183.93747 * 14 4 3 17 17 C 1.47022 * 127.19125 * 318.34778 * 16 14 4 18 18 C 1.34177 * 105.95101 * 179.97438 * 17 16 14 19 19 C 1.50702 * 125.43593 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47066 * 120.00236 * 19 18 17 21 21 C 1.52999 * 109.47398 * 240.00296 * 19 18 17 22 22 O 1.34221 * 109.12792 * 0.02562 * 18 17 16 23 23 C 1.33653 * 110.90375 * 359.97438 * 22 18 17 24 24 C 1.50696 * 125.79756 * 180.02562 * 23 22 18 25 25 H 1.08001 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00164 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99994 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47456 * 5.00519 * 3 2 1 29 29 H 1.08998 * 109.47628 * 245.00271 * 3 2 1 30 30 H 1.09005 * 109.46765 * 33.85402 * 5 4 3 31 31 H 1.09004 * 109.47029 * 153.84884 * 5 4 3 32 32 H 0.97001 * 119.99766 * 179.97438 * 9 8 6 33 33 H 1.07996 * 127.02286 * 0.22145 * 17 16 14 34 34 H 1.08996 * 109.47000 * 0.02562 * 19 18 17 35 35 H 1.08999 * 109.47174 * 59.99571 * 20 19 18 36 36 H 1.08994 * 109.47512 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.46782 * 300.00230 * 20 19 18 38 38 H 1.08998 * 109.47141 * 60.00084 * 21 19 18 39 39 H 1.08994 * 109.46978 * 180.02562 * 21 19 18 40 40 H 1.09003 * 109.46932 * 299.99933 * 21 19 18 41 41 H 1.08999 * 109.47350 * 359.97438 * 24 23 22 42 42 H 1.09004 * 109.47201 * 119.97938 * 24 23 22 43 43 H 1.09003 * 109.47631 * 239.98199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5321 1.7760 2.4490 6 6 2.6429 3.2761 2.5407 7 1 3.0199 3.8420 1.7017 8 6 2.2630 3.9261 3.6958 9 7 1.8044 3.2369 4.7176 10 14 2.3997 5.7857 3.8092 11 1 1.1340 6.4046 3.3400 12 1 2.6500 6.1785 5.2192 13 1 3.5239 6.2521 2.9584 14 6 4.2742 0.9479 0.9603 15 8 4.6761 0.6477 -0.1476 16 6 5.1875 0.8918 2.1156 17 6 5.2963 1.8668 3.2106 18 6 6.2543 1.4002 4.0260 19 6 6.7225 2.0656 5.2946 20 6 6.4933 1.1242 6.4787 21 6 8.2137 2.3884 5.1809 22 8 6.7299 0.2468 3.5310 23 6 6.1084 -0.0758 2.3925 24 6 6.3788 -1.3005 1.5571 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6212 1.4027 -0.9313 30 1 1.4926 1.4792 2.5888 31 1 3.1480 1.3182 3.2231 32 1 1.5375 3.6942 5.5304 33 1 4.7198 2.7715 3.3355 34 1 6.1617 2.9872 5.4497 35 1 7.0538 0.2023 6.3238 36 1 6.8315 1.6055 7.3963 37 1 5.4309 0.8942 6.5597 38 1 8.3769 3.0590 4.3373 39 1 8.5523 2.8692 6.0985 40 1 8.7742 1.4665 5.0259 41 1 7.1665 -1.8920 2.0237 42 1 5.4703 -1.8983 1.4840 43 1 6.6953 -0.9970 0.5591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292313155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:14 Heat of formation + Delta-G solvation = -16.995571 kcal Electronic energy + Delta-G solvation = -24159.471828 eV Core-core repulsion = 20785.578884 eV Total energy + Delta-G solvation = -3373.892944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.99663 -38.82307 -35.54425 -35.23864 -33.64186 -32.35541 -31.98264 -30.82624 -27.53192 -26.99320 -26.75235 -25.30675 -23.12037 -21.89429 -21.41105 -20.32871 -19.36951 -17.49554 -16.59136 -16.27458 -15.84104 -15.51277 -15.40461 -14.64017 -14.47896 -14.36169 -14.05645 -13.65766 -13.10407 -12.93134 -12.65271 -12.59535 -12.54252 -12.41293 -12.12839 -12.03504 -11.71204 -11.34081 -11.16941 -11.06972 -11.02489 -10.93761 -10.86776 -10.74738 -10.59195 -10.25085 -9.77673 -9.31230 -9.00008 -8.85325 -8.51692 -7.84597 -7.66005 -6.19753 -4.26652 2.05378 2.58321 2.83491 3.19448 3.27221 3.27634 3.31256 3.82881 4.12278 4.33371 4.84653 5.09627 5.11418 5.30425 5.32276 5.32527 5.48545 5.55700 5.58620 5.75006 5.75999 5.77575 5.90400 5.95204 6.01649 6.04591 6.10807 6.20185 6.30478 6.37990 6.39965 6.43051 6.62289 6.68023 6.79186 6.93952 7.08805 7.24210 7.29250 7.58661 7.73510 7.74819 8.07061 8.35552 8.79181 9.03607 9.38896 10.85955 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.008000 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.737263 B = 3499.298737 C = 5582.485432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.142 3.858 4 N -0.584 5.584 5 C 0.234 3.766 6 C -0.535 4.535 7 H 0.061 0.939 8 C 0.067 3.933 9 N -0.884 5.884 10 Si 0.889 3.111 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.589 3.411 15 O -0.574 6.574 16 C -0.216 4.216 17 C -0.144 4.144 18 C -0.035 4.035 19 C -0.008 4.008 20 C -0.146 4.146 21 C -0.146 4.146 22 O -0.179 6.179 23 C 0.034 3.966 24 C -0.067 4.067 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.184 0.816 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.233 -5.312 0.106 8.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.312 5.312 5 C 0.114 3.886 6 C -0.574 4.574 7 H 0.079 0.921 8 C -0.136 4.136 9 N -0.522 5.522 10 Si 0.716 3.284 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.378 3.622 15 O -0.457 6.457 16 C -0.220 4.220 17 C -0.163 4.163 18 C -0.083 4.083 19 C -0.026 4.026 20 C -0.203 4.203 21 C -0.203 4.203 22 O -0.077 6.077 23 C -0.018 4.018 24 C -0.124 4.124 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.201 0.799 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.565 -5.584 -0.103 8.619 hybrid contribution -0.381 1.198 0.237 1.280 sum 6.184 -4.385 0.134 7.582 Atomic orbital electron populations 1.23763 0.95766 1.01550 1.01824 1.23363 0.96092 0.99200 0.98765 1.20422 0.92253 0.94761 0.90630 1.48054 1.08264 1.62441 1.12483 1.19596 0.96130 0.94828 0.78054 1.21477 1.43809 0.91916 1.00162 0.92076 1.24918 0.94877 0.98335 0.95515 1.69936 1.42340 1.35655 1.04285 0.86628 0.78813 0.85480 0.77458 1.20472 1.20953 1.19640 1.17335 0.81655 0.76437 0.86780 1.90661 1.76926 1.52573 1.25519 1.21096 1.02373 0.98906 0.99637 1.23516 0.98263 1.02381 0.92154 1.22060 0.99884 0.87377 0.98992 1.19667 0.96807 0.97873 0.88248 1.21839 1.02674 0.99140 0.96662 1.21859 0.94849 1.01781 1.01848 1.83546 1.54255 1.36616 1.33236 1.22386 0.94035 0.98209 0.87166 1.20296 1.02846 0.91396 0.97842 0.88408 0.88925 0.87959 0.89901 0.89825 0.94963 0.93239 0.92513 0.79917 0.88127 0.92597 0.92245 0.91810 0.92329 0.92174 0.92466 0.91034 0.90027 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.84 14.32 29.01 0.42 -2.43 16 2 C -0.15 -2.63 9.85 -36.03 -0.35 -2.98 16 3 C 0.14 2.74 5.94 -5.20 -0.03 2.71 16 4 N -0.58 -12.88 2.44 -177.72 -0.43 -13.32 16 5 C 0.23 5.66 4.72 -5.19 -0.02 5.63 16 6 C -0.53 -13.64 7.16 -34.44 -0.25 -13.89 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.07 1.72 5.36 -17.82 -0.10 1.62 16 9 N -0.88 -23.58 13.29 55.43 0.74 -22.85 16 10 Si 0.89 19.99 29.54 -169.99 -5.02 14.96 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 C 0.59 13.23 7.43 -12.54 -0.09 13.14 16 15 O -0.57 -13.41 16.11 5.27 0.08 -13.32 16 16 C -0.22 -4.60 5.33 -103.28 -0.55 -5.15 16 17 C -0.14 -3.07 8.58 -37.45 -0.32 -3.39 16 18 C -0.04 -0.65 5.79 -35.74 -0.21 -0.86 16 19 C -0.01 -0.11 3.32 -91.77 -0.30 -0.42 16 20 C -0.15 -1.97 9.18 37.16 0.34 -1.62 16 21 C -0.15 -1.83 9.18 37.16 0.34 -1.49 16 22 O -0.18 -3.25 10.52 7.63 0.08 -3.17 16 23 C 0.03 0.64 7.37 -34.97 -0.26 0.38 16 24 C -0.07 -0.98 9.84 36.00 0.35 -0.63 16 25 H 0.10 1.41 7.84 -52.49 -0.41 1.00 16 26 H 0.09 1.19 8.06 -52.48 -0.42 0.77 16 27 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.08 1.57 7.76 -51.93 -0.40 1.17 16 29 H 0.08 1.60 7.25 -51.93 -0.38 1.23 16 30 H 0.03 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.05 1.27 5.39 -51.93 -0.28 0.99 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.18 4.28 5.42 -52.49 -0.28 3.99 16 34 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.35 8.06 -51.93 -0.42 0.94 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -28.67 361.85 -6.92 -35.60 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.79 Total: 6.02 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.03 Total: -9.38 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.30 Total: -36.16 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.17 Total: -16.49 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.67 -6.92 -35.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.601 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds