Wall clock time and date at job start Tue Mar 31 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99885 * 2 1 4 4 N 1.46498 * 109.46784 * 125.00102 * 3 2 1 5 5 C 1.46504 * 120.00184 * 274.32639 * 4 3 2 6 6 C 1.50698 * 109.47513 * 273.85260 * 5 4 3 7 7 H 1.07996 * 119.99806 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99921 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00026 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99702 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47234 * 89.99847 * 10 8 6 12 12 H 1.48499 * 109.46832 * 210.00481 * 10 8 6 13 13 H 1.48501 * 109.47001 * 329.99871 * 10 8 6 14 14 C 1.34777 * 120.00246 * 94.33265 * 4 3 2 15 15 O 1.21612 * 119.99792 * 3.93531 * 14 4 3 16 16 C 1.47377 * 120.00390 * 183.93747 * 14 4 3 17 17 C 1.47022 * 127.19125 * 318.34778 * 16 14 4 18 18 C 1.34177 * 105.95101 * 179.97438 * 17 16 14 19 19 C 1.50702 * 125.43593 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47066 * 120.00236 * 19 18 17 21 21 C 1.52999 * 109.47398 * 240.00296 * 19 18 17 22 22 O 1.34221 * 109.12792 * 0.02562 * 18 17 16 23 23 C 1.33653 * 110.90375 * 359.97438 * 22 18 17 24 24 C 1.50696 * 125.79756 * 180.02562 * 23 22 18 25 25 H 1.08001 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.00164 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99994 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47456 * 5.00519 * 3 2 1 29 29 H 1.08998 * 109.47628 * 245.00271 * 3 2 1 30 30 H 1.09005 * 109.46765 * 33.85402 * 5 4 3 31 31 H 1.09004 * 109.47029 * 153.84884 * 5 4 3 32 32 H 0.97001 * 119.99766 * 179.97438 * 9 8 6 33 33 H 1.07996 * 127.02286 * 0.22145 * 17 16 14 34 34 H 1.08996 * 109.47000 * 0.02562 * 19 18 17 35 35 H 1.08999 * 109.47174 * 59.99571 * 20 19 18 36 36 H 1.08994 * 109.47512 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.46782 * 300.00230 * 20 19 18 38 38 H 1.08998 * 109.47141 * 60.00084 * 21 19 18 39 39 H 1.08994 * 109.46978 * 180.02562 * 21 19 18 40 40 H 1.09003 * 109.46932 * 299.99933 * 21 19 18 41 41 H 1.08999 * 109.47350 * 359.97438 * 24 23 22 42 42 H 1.09004 * 109.47201 * 119.97938 * 24 23 22 43 43 H 1.09003 * 109.47631 * 239.98199 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5321 1.7760 2.4490 6 6 2.6429 3.2761 2.5407 7 1 3.0199 3.8420 1.7017 8 6 2.2630 3.9261 3.6958 9 7 1.8044 3.2369 4.7176 10 14 2.3997 5.7857 3.8092 11 1 1.1340 6.4046 3.3400 12 1 2.6500 6.1785 5.2192 13 1 3.5239 6.2521 2.9584 14 6 4.2742 0.9479 0.9603 15 8 4.6761 0.6477 -0.1476 16 6 5.1875 0.8918 2.1156 17 6 5.2963 1.8668 3.2106 18 6 6.2543 1.4002 4.0260 19 6 6.7225 2.0656 5.2946 20 6 6.4933 1.1242 6.4787 21 6 8.2137 2.3884 5.1809 22 8 6.7299 0.2468 3.5310 23 6 6.1084 -0.0758 2.3925 24 6 6.3788 -1.3005 1.5571 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6212 1.4027 -0.9313 30 1 1.4926 1.4792 2.5888 31 1 3.1480 1.3182 3.2231 32 1 1.5375 3.6942 5.5304 33 1 4.7198 2.7715 3.3355 34 1 6.1617 2.9872 5.4497 35 1 7.0538 0.2023 6.3238 36 1 6.8315 1.6055 7.3963 37 1 5.4309 0.8942 6.5597 38 1 8.3769 3.0590 4.3373 39 1 8.5523 2.8692 6.0985 40 1 8.7742 1.4665 5.0259 41 1 7.1665 -1.8920 2.0237 42 1 5.4703 -1.8983 1.4840 43 1 6.6953 -0.9970 0.5591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292313155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:13 Heat of formation + Delta-G solvation = -30.995035 kcal Electronic energy + Delta-G solvation = -24160.078890 eV Core-core repulsion = 20785.578884 eV Total energy + Delta-G solvation = -3374.500006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.50459 -40.55266 -37.18658 -36.50789 -35.31869 -34.13069 -33.50121 -32.17390 -29.42609 -28.22461 -28.02629 -26.78451 -25.02891 -23.50584 -22.66980 -21.83741 -20.77429 -19.17967 -18.53448 -17.87350 -17.37321 -17.09258 -16.95051 -16.28632 -16.10887 -15.68488 -15.55821 -15.00467 -14.40312 -14.38059 -14.22634 -14.16002 -13.95657 -13.79117 -13.68080 -13.12759 -13.00938 -13.00258 -12.82026 -12.77029 -12.62023 -12.28360 -12.21761 -12.13120 -12.06282 -11.80729 -11.69206 -11.03556 -10.68056 -10.42873 -10.28180 -9.55317 -9.23093 -8.19415 -6.33071 0.52296 1.23873 1.26094 1.38793 1.41942 1.51015 1.84064 2.14053 2.34954 2.54443 3.09397 3.51200 3.77898 3.90085 4.06500 4.08896 4.18524 4.20811 4.37027 4.41216 4.51807 4.60773 4.68604 4.78140 4.79555 4.80616 4.90768 4.93850 4.95181 5.01242 5.03912 5.13491 5.23042 5.25126 5.36097 5.38402 5.57501 5.64248 5.64821 5.73306 5.91066 6.06730 6.20917 6.51552 6.79328 7.24634 7.38036 8.85994 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.008000 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.737263 B = 3499.298737 C = 5582.485432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.180 4.180 3 C 0.140 3.860 4 N -0.588 5.588 5 C 0.255 3.745 6 C -0.540 4.540 7 H 0.047 0.953 8 C 0.032 3.968 9 N -0.910 5.910 10 Si 0.947 3.053 11 H -0.275 1.275 12 H -0.275 1.275 13 H -0.273 1.273 14 C 0.585 3.415 15 O -0.589 6.589 16 C -0.255 4.255 17 C -0.179 4.179 18 C -0.020 4.020 19 C -0.013 4.013 20 C -0.140 4.140 21 C -0.139 4.139 22 O -0.170 6.170 23 C 0.046 3.954 24 C -0.065 4.065 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.013 0.987 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.157 0.843 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -5.774 0.886 9.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.199 4.199 3 C 0.018 3.982 4 N -0.316 5.316 5 C 0.134 3.866 6 C -0.579 4.579 7 H 0.065 0.935 8 C -0.169 4.169 9 N -0.548 5.548 10 Si 0.772 3.228 11 H -0.201 1.201 12 H -0.200 1.200 13 H -0.198 1.198 14 C 0.375 3.625 15 O -0.473 6.473 16 C -0.259 4.259 17 C -0.198 4.198 18 C -0.068 4.068 19 C -0.031 4.031 20 C -0.197 4.197 21 C -0.196 4.196 22 O -0.067 6.067 23 C -0.006 4.006 24 C -0.121 4.121 25 H 0.120 0.880 26 H 0.139 0.861 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.174 0.826 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.401 -6.050 0.666 9.582 hybrid contribution -0.674 1.319 -0.013 1.481 sum 6.728 -4.731 0.653 8.250 Atomic orbital electron populations 1.24027 0.94973 1.03086 0.98148 1.23172 0.96788 0.97850 1.02095 1.20526 0.91922 0.96288 0.89433 1.48081 1.08827 1.62306 1.12409 1.19168 0.94428 0.94110 0.78858 1.21490 1.43926 0.92471 0.99974 0.93458 1.25515 0.94342 1.02083 0.95010 1.70017 1.42874 1.37216 1.04705 0.85728 0.78626 0.80771 0.77676 1.20081 1.20027 1.19811 1.17548 0.81793 0.76095 0.87055 1.90626 1.77141 1.53491 1.26067 1.21201 1.04006 1.00600 1.00064 1.23269 1.00157 1.02482 0.93930 1.22589 0.98330 0.86742 0.99137 1.19884 0.98547 0.97574 0.87131 1.21804 1.01490 0.99358 0.97068 1.21820 0.92600 1.02149 1.03051 1.83588 1.53819 1.36278 1.33046 1.23060 0.92339 0.98388 0.86831 1.20466 1.04390 0.90034 0.97256 0.87975 0.86138 0.87950 0.90192 0.90260 0.96873 0.94831 0.92229 0.82578 0.88964 0.91818 0.89414 0.93953 0.93046 0.89394 0.91914 0.87548 0.89353 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 14.32 67.78 0.97 -3.69 16 2 C -0.18 -6.09 9.85 25.65 0.25 -5.83 16 3 C 0.14 5.56 5.94 85.63 0.51 6.07 16 4 N -0.59 -26.97 2.44 -834.43 -2.04 -29.01 16 5 C 0.25 12.89 4.72 85.63 0.40 13.29 16 6 C -0.54 -28.52 7.16 25.60 0.18 -28.33 16 7 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 8 C 0.03 1.66 5.36 84.66 0.45 2.12 16 9 N -0.91 -49.31 13.29 21.45 0.28 -49.03 16 10 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.58 27.16 7.43 86.65 0.64 27.80 16 15 O -0.59 -28.13 16.11 -4.07 -0.07 -28.19 16 16 C -0.25 -11.14 5.33 -18.99 -0.10 -11.24 16 17 C -0.18 -7.91 8.58 23.65 0.20 -7.71 16 18 C -0.02 -0.74 5.79 24.76 0.14 -0.59 16 19 C -0.01 -0.38 3.32 -11.54 -0.04 -0.42 16 20 C -0.14 -3.53 9.18 71.98 0.66 -2.87 16 21 C -0.14 -3.17 9.18 71.98 0.66 -2.51 16 22 O -0.17 -6.01 10.52 4.40 0.05 -5.97 16 23 C 0.05 1.71 7.37 25.26 0.19 1.89 16 24 C -0.07 -1.79 9.84 71.23 0.70 -1.09 16 25 H 0.10 2.81 7.84 -2.91 -0.02 2.78 16 26 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.10 3.45 8.06 -2.91 -0.02 3.42 16 28 H 0.08 3.13 7.76 -2.39 -0.02 3.11 16 29 H 0.08 3.15 7.25 -2.39 -0.02 3.13 16 30 H 0.01 0.71 8.10 -2.38 -0.02 0.69 16 31 H 0.03 1.81 5.39 -2.38 -0.01 1.80 16 32 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 33 H 0.16 7.74 5.42 -2.91 -0.02 7.72 16 34 H 0.09 2.82 8.09 -2.39 -0.02 2.81 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.09 2.58 8.06 -2.39 -0.02 2.56 16 Total: -1.00 -62.98 361.85 7.07 -55.91 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.98 Total: 25.98 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.83 Total: -13.11 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.75 Total: -78.03 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.02 Total: -34.16 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -62.98 7.07 -55.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.918 kcal (2) G-P(sol) polarization free energy of solvation -62.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds