Wall clock time and date at job start Tue Mar 31 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00333 * 2 1 4 4 C 1.38207 * 120.00373 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99773 * 0.02575 * 4 3 2 6 6 C 1.38207 * 120.00204 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00100 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47264 * 89.99697 * 7 6 5 9 9 H 1.09007 * 109.46427 * 55.00269 * 8 7 6 10 10 C 1.53001 * 109.47065 * 174.99836 * 8 7 6 11 11 O 1.42900 * 109.47066 * 55.00133 * 10 8 7 12 12 N 1.46497 * 109.47036 * 294.99981 * 8 7 6 13 13 C 1.34777 * 119.99525 * 154.99621 * 12 8 7 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 8 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 8 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00078 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99915 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 89.99876 * 21 19 17 23 23 H 1.48492 * 109.47096 * 210.00138 * 21 19 17 24 24 H 1.48506 * 109.46749 * 330.00135 * 21 19 17 25 25 C 1.38219 * 120.00048 * 180.28030 * 2 1 3 26 26 H 1.08995 * 109.47393 * 89.99885 * 1 2 3 27 27 H 1.08997 * 109.46866 * 210.00288 * 1 2 3 28 28 H 1.09007 * 109.47055 * 329.99971 * 1 2 3 29 29 H 1.08000 * 119.99714 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.00578 * 179.97438 * 4 3 2 31 31 H 1.08007 * 119.99926 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47006 * 330.00157 * 7 6 5 33 33 H 1.09003 * 109.47387 * 210.00057 * 7 6 5 34 34 H 1.09000 * 109.46655 * 175.00093 * 10 8 7 35 35 H 1.09004 * 109.47200 * 295.00218 * 10 8 7 36 36 H 0.96697 * 113.99844 * 179.97438 * 11 10 8 37 37 H 0.97000 * 120.00580 * 335.00367 * 12 8 7 38 38 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 39 39 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 40 40 H 1.09000 * 109.46887 * 300.00372 * 16 15 13 41 41 H 1.08998 * 109.46846 * 59.99549 * 16 15 13 42 42 H 0.97008 * 119.99515 * 180.02562 * 20 19 17 43 43 H 1.07995 * 119.99769 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 4.3341 -2.5021 -0.0001 8 6 4.5897 -2.9441 1.4423 9 1 3.6435 -2.9887 1.9816 10 6 5.2432 -4.3275 1.4435 11 8 6.4239 -4.2973 0.6391 12 7 5.4803 -1.9827 2.0971 13 6 5.4588 -1.8493 3.4380 14 8 4.7025 -2.5254 4.1027 15 6 6.3793 -0.8648 4.1121 16 6 6.1604 -0.9157 5.6256 17 6 7.0805 0.0693 6.2996 18 1 7.7543 0.6711 5.7078 19 6 7.0621 0.2021 7.6718 20 7 6.2419 -0.5311 8.3925 21 14 8.2031 1.4226 8.5075 22 1 7.5239 2.7384 8.6196 23 1 8.5499 0.9273 9.8637 24 1 9.4424 1.5721 7.7032 25 6 2.1981 -1.1970 -0.0059 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 0.0001 31 1 5.3517 -0.0001 0.0005 32 1 5.2863 -2.3716 -0.5142 33 1 3.7448 -3.2616 -0.5138 34 1 5.5061 -4.6042 2.4645 35 1 4.5452 -5.0594 1.0370 36 1 6.8912 -5.1427 0.5945 37 1 6.0855 -1.4421 1.5656 38 1 7.4143 -1.1213 3.8859 39 1 6.1662 0.1402 3.7479 40 1 5.1255 -0.6592 5.8518 41 1 6.3736 -1.9206 5.9899 42 1 6.2288 -0.4373 9.3580 43 1 1.6580 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293314236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:06 Heat of formation + Delta-G solvation = -90.118753 kcal Electronic energy + Delta-G solvation = -22974.759455 eV Core-core repulsion = 19597.695652 eV Total energy + Delta-G solvation = -3377.063803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93037 -38.97417 -37.14081 -34.99379 -33.40069 -32.91543 -32.04712 -30.95172 -29.41710 -27.11638 -26.10171 -25.59454 -22.45928 -22.12696 -20.95878 -20.34221 -19.51410 -17.56274 -16.76553 -16.56183 -16.03927 -15.62100 -15.28369 -15.22221 -14.68988 -14.40040 -14.15874 -14.06024 -13.75471 -13.21614 -13.10349 -12.93616 -12.68190 -12.39497 -12.23937 -12.15877 -11.87595 -11.71689 -11.29502 -11.11785 -11.01357 -10.91357 -10.86261 -10.56733 -10.10563 -9.90198 -9.61222 -9.12083 -8.95205 -8.86020 -8.65387 -8.58230 -8.28401 -5.92803 -3.96820 1.31681 1.36235 3.33334 3.35517 3.41161 3.43951 3.60784 3.69612 4.24964 4.50383 4.57978 4.70896 4.82729 4.93728 5.06003 5.18804 5.23243 5.26767 5.32452 5.42114 5.42377 5.46347 5.53540 5.63528 5.68974 5.72868 5.80731 5.98749 6.07904 6.11906 6.30286 6.32312 6.43854 6.52645 6.57729 6.85567 6.96280 6.98970 7.52531 7.78359 7.91392 8.00714 8.11399 8.43264 8.87287 9.12056 9.66438 11.18188 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.003869 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.397350 B = 7236.081846 C = 8424.661102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.075 4.075 7 C -0.082 4.082 8 C 0.155 3.845 9 H 0.098 0.902 10 C 0.063 3.937 11 O -0.569 6.569 12 N -0.728 5.728 13 C 0.512 3.488 14 O -0.540 6.540 15 C -0.130 4.130 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.119 4.119 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.376 0.624 37 H 0.397 0.603 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.260 0.740 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 -3.077 -22.358 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.130 4.130 5 C -0.134 4.134 6 C -0.075 4.075 7 C -0.120 4.120 8 C 0.049 3.951 9 H 0.115 0.885 10 C -0.016 4.016 11 O -0.374 6.374 12 N -0.381 5.381 13 C 0.301 3.699 14 O -0.416 6.416 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.137 4.137 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.223 0.777 37 H 0.231 0.769 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.413 -2.985 -21.742 23.164 hybrid contribution 1.046 0.328 0.426 1.176 sum -6.367 -2.656 -21.316 22.405 Atomic orbital electron populations 1.20784 0.91371 1.02885 1.02022 1.19887 0.95971 0.93222 0.99554 1.21006 0.94364 0.97404 1.01632 1.21129 0.94299 0.98072 0.99496 1.20998 0.99680 0.91989 1.00711 1.19814 0.93626 0.94974 0.99071 1.20794 1.00787 0.94247 0.96157 1.20906 0.94184 0.87295 0.92685 0.88459 1.22691 0.86878 0.97221 0.94847 1.86443 1.40623 1.38216 1.72116 1.46127 1.42305 1.42213 1.07458 1.21526 0.83629 0.83653 0.81135 1.90649 1.40578 1.46370 1.64008 1.21848 0.97514 0.96644 1.00967 1.18881 0.97586 0.97614 0.85852 1.21237 1.21428 1.21871 0.91858 0.92642 1.25021 0.95742 0.96032 0.97582 1.70006 1.37271 1.39790 1.05843 0.86601 0.81138 0.81393 0.78881 1.20686 1.21244 1.19883 1.20892 0.93547 0.97513 1.01715 0.91389 0.91548 0.91564 0.86357 0.86057 0.86268 0.89565 0.89988 0.92614 0.93231 0.77746 0.76883 0.90354 0.90399 0.95901 0.95920 0.93011 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.09 -0.96 5.88 -104.62 -0.62 -1.57 16 3 C -0.13 -1.40 9.70 -39.58 -0.38 -1.79 16 4 C -0.11 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.12 -1.33 9.10 -39.58 -0.36 -1.69 16 6 C -0.07 -0.86 4.95 -104.63 -0.52 -1.38 16 7 C -0.08 -0.85 4.61 -27.88 -0.13 -0.97 16 8 C 0.15 1.99 2.36 -67.93 -0.16 1.83 16 9 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 10 C 0.06 0.73 6.85 37.16 0.25 0.98 16 11 O -0.57 -6.00 12.83 -35.23 -0.45 -6.46 16 12 N -0.73 -10.79 4.47 -53.80 -0.24 -11.03 16 13 C 0.51 10.16 7.79 -10.98 -0.09 10.08 16 14 O -0.54 -12.88 15.65 5.55 0.09 -12.80 16 15 C -0.13 -2.74 5.64 -27.88 -0.16 -2.90 16 16 C 0.04 1.05 4.26 -27.88 -0.12 0.94 16 17 C -0.53 -15.21 9.11 -34.44 -0.31 -15.53 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.12 -1.34 9.36 -39.58 -0.37 -1.71 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.12 1.19 7.57 -52.48 -0.40 0.80 16 32 H 0.09 0.87 7.67 -51.93 -0.40 0.47 16 33 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.38 2.46 9.12 45.56 0.42 2.88 16 37 H 0.40 5.07 7.83 -40.82 -0.32 4.75 16 38 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -35.64 363.37 -8.62 -44.26 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.12 Total: 5.07 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.09 Total: -14.38 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.50 Total: -38.12 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.36 Total: -19.25 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.64 -8.62 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293314236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.854 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds