Wall clock time and date at job start Tue Mar 31 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00333 * 2 1 4 4 C 1.38207 * 120.00373 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99773 * 0.02575 * 4 3 2 6 6 C 1.38207 * 120.00204 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00100 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47264 * 89.99697 * 7 6 5 9 9 H 1.09007 * 109.46427 * 55.00269 * 8 7 6 10 10 C 1.53001 * 109.47065 * 174.99836 * 8 7 6 11 11 O 1.42900 * 109.47066 * 55.00133 * 10 8 7 12 12 N 1.46497 * 109.47036 * 294.99981 * 8 7 6 13 13 C 1.34777 * 119.99525 * 154.99621 * 12 8 7 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 8 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 8 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00078 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99915 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 89.99876 * 21 19 17 23 23 H 1.48492 * 109.47096 * 210.00138 * 21 19 17 24 24 H 1.48506 * 109.46749 * 330.00135 * 21 19 17 25 25 C 1.38219 * 120.00048 * 180.28030 * 2 1 3 26 26 H 1.08995 * 109.47393 * 89.99885 * 1 2 3 27 27 H 1.08997 * 109.46866 * 210.00288 * 1 2 3 28 28 H 1.09007 * 109.47055 * 329.99971 * 1 2 3 29 29 H 1.08000 * 119.99714 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.00578 * 179.97438 * 4 3 2 31 31 H 1.08007 * 119.99926 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47006 * 330.00157 * 7 6 5 33 33 H 1.09003 * 109.47387 * 210.00057 * 7 6 5 34 34 H 1.09000 * 109.46655 * 175.00093 * 10 8 7 35 35 H 1.09004 * 109.47200 * 295.00218 * 10 8 7 36 36 H 0.96697 * 113.99844 * 179.97438 * 11 10 8 37 37 H 0.97000 * 120.00580 * 335.00367 * 12 8 7 38 38 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 39 39 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 40 40 H 1.09000 * 109.46887 * 300.00372 * 16 15 13 41 41 H 1.08998 * 109.46846 * 59.99549 * 16 15 13 42 42 H 0.97008 * 119.99515 * 180.02562 * 20 19 17 43 43 H 1.07995 * 119.99769 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 4.3341 -2.5021 -0.0001 8 6 4.5897 -2.9441 1.4423 9 1 3.6435 -2.9887 1.9816 10 6 5.2432 -4.3275 1.4435 11 8 6.4239 -4.2973 0.6391 12 7 5.4803 -1.9827 2.0971 13 6 5.4588 -1.8493 3.4380 14 8 4.7025 -2.5254 4.1027 15 6 6.3793 -0.8648 4.1121 16 6 6.1604 -0.9157 5.6256 17 6 7.0805 0.0693 6.2996 18 1 7.7543 0.6711 5.7078 19 6 7.0621 0.2021 7.6718 20 7 6.2419 -0.5311 8.3925 21 14 8.2031 1.4226 8.5075 22 1 7.5239 2.7384 8.6196 23 1 8.5499 0.9273 9.8637 24 1 9.4424 1.5721 7.7032 25 6 2.1981 -1.1970 -0.0059 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 0.0001 31 1 5.3517 -0.0001 0.0005 32 1 5.2863 -2.3716 -0.5142 33 1 3.7448 -3.2616 -0.5138 34 1 5.5061 -4.6042 2.4645 35 1 4.5452 -5.0594 1.0370 36 1 6.8912 -5.1427 0.5945 37 1 6.0855 -1.4421 1.5656 38 1 7.4143 -1.1213 3.8859 39 1 6.1662 0.1402 3.7479 40 1 5.1255 -0.6592 5.8518 41 1 6.3736 -1.9206 5.9899 42 1 6.2288 -0.4373 9.3580 43 1 1.6580 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293314236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:06 Heat of formation + Delta-G solvation = -114.962553 kcal Electronic energy + Delta-G solvation = -22975.836763 eV Core-core repulsion = 19597.695652 eV Total energy + Delta-G solvation = -3378.141111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08603 -40.12853 -38.20743 -36.03815 -35.53699 -33.93671 -33.19428 -32.67816 -30.57937 -27.87261 -27.63264 -26.93384 -24.11303 -23.08623 -22.18376 -21.38213 -20.99797 -18.86167 -18.38449 -17.44948 -17.37290 -17.09722 -16.55350 -16.46243 -16.17009 -15.71983 -15.41323 -15.01717 -14.65776 -14.50165 -14.24244 -14.08271 -13.98340 -13.79549 -13.46433 -13.21986 -13.04508 -12.88182 -12.78949 -12.67970 -12.46082 -12.18665 -11.92540 -11.82466 -11.73480 -11.63536 -11.30613 -11.00833 -10.64372 -10.57145 -10.04350 -9.62839 -9.43299 -8.18097 -6.32232 0.47155 0.52307 1.41563 1.44551 1.55518 1.75174 2.27317 2.45258 2.84977 3.14727 3.39858 3.71364 3.92482 3.95540 4.06825 4.14616 4.25170 4.32089 4.38007 4.47478 4.50657 4.51248 4.55174 4.64124 4.69051 4.81932 4.83567 4.87001 5.01007 5.04424 5.10865 5.26953 5.32759 5.47441 5.55277 5.61743 5.63001 5.72072 5.76129 5.85179 6.17920 6.18120 6.64756 6.85843 6.88109 7.37025 7.39279 8.94620 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.003869 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.397350 B = 7236.081846 C = 8424.661102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.140 4.140 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.087 4.087 7 C -0.067 4.067 8 C 0.150 3.850 9 H 0.076 0.924 10 C 0.071 3.929 11 O -0.575 6.575 12 N -0.704 5.704 13 C 0.513 3.487 14 O -0.590 6.590 15 C -0.120 4.120 16 C 0.045 3.955 17 C -0.544 4.544 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.255 1.255 25 C -0.134 4.134 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.024 0.976 35 H 0.079 0.921 36 H 0.395 0.605 37 H 0.411 0.589 38 H 0.100 0.900 39 H 0.099 0.901 40 H -0.020 1.020 41 H -0.018 1.018 42 H 0.263 0.737 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 -2.165 -24.309 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.158 4.158 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.087 4.087 7 C -0.105 4.105 8 C 0.045 3.955 9 H 0.094 0.906 10 C -0.009 4.009 11 O -0.382 6.382 12 N -0.356 5.356 13 C 0.302 3.698 14 O -0.470 6.470 15 C -0.160 4.160 16 C 0.008 3.992 17 C -0.582 4.582 18 H 0.092 0.908 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.179 1.179 25 C -0.152 4.152 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.043 0.957 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.247 0.753 38 H 0.119 0.881 39 H 0.117 0.883 40 H -0.001 1.001 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.206 -2.075 -23.772 24.656 hybrid contribution 0.637 0.009 0.970 1.160 sum -5.568 -2.066 -22.802 23.563 Atomic orbital electron populations 1.20817 0.89857 1.03181 1.03065 1.20253 0.97357 0.93258 0.99153 1.21305 0.94704 0.98186 1.01634 1.21418 0.94672 0.98797 0.99413 1.21256 1.00498 0.92153 1.00935 1.20015 0.93926 0.95496 0.99296 1.20714 1.01415 0.94294 0.94067 1.21077 0.92922 0.87687 0.93800 0.90637 1.22491 0.87930 0.96758 0.93677 1.86386 1.40373 1.40043 1.71442 1.45869 1.42012 1.42000 1.05726 1.21231 0.82935 0.83030 0.82634 1.90635 1.42607 1.48264 1.65493 1.21618 0.99205 0.98451 0.96687 1.18654 0.94966 0.95112 0.90501 1.21711 1.21724 1.22118 0.92611 0.90761 1.26133 0.97486 0.98165 0.98560 1.70183 1.39367 1.41900 1.06289 0.85322 0.79091 0.78359 0.77484 1.19686 1.21058 1.17921 1.21177 0.93895 0.98274 1.01815 0.89902 0.91346 0.91180 0.84978 0.84684 0.85026 0.88720 0.87836 0.95733 0.90259 0.75521 0.75256 0.88134 0.88317 1.00129 0.99939 0.92851 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.23 0.71 -1.09 16 2 C -0.10 -2.14 5.88 -19.87 -0.12 -2.25 16 3 C -0.14 -3.00 9.70 22.27 0.22 -2.78 16 4 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 5 C -0.13 -2.80 9.10 22.27 0.20 -2.60 16 6 C -0.09 -1.88 4.95 -19.87 -0.10 -1.98 16 7 C -0.07 -1.24 4.61 29.85 0.14 -1.10 16 8 C 0.15 3.71 2.36 44.99 0.11 3.82 16 9 H 0.08 2.25 7.58 -2.38 -0.02 2.23 16 10 C 0.07 1.54 6.85 71.98 0.49 2.04 16 11 O -0.57 -10.69 12.83 -148.98 -1.91 -12.60 16 12 N -0.70 -20.24 4.47 -442.52 -1.98 -22.22 16 13 C 0.51 20.67 7.79 87.66 0.68 21.36 16 14 O -0.59 -29.49 15.65 -3.04 -0.05 -29.53 16 15 C -0.12 -5.06 5.64 29.85 0.17 -4.89 16 16 C 0.05 2.60 4.26 29.85 0.13 2.73 16 17 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 18 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 20 N -0.94 -60.32 13.29 21.45 0.28 -60.03 16 21 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 C -0.13 -2.89 9.36 22.27 0.21 -2.68 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 29 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.13 2.36 7.57 -2.91 -0.02 2.34 16 32 H 0.09 1.62 7.67 -2.39 -0.02 1.60 16 33 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.40 4.15 9.12 -74.06 -0.68 3.48 16 37 H 0.41 9.65 7.83 -92.71 -0.73 8.92 16 38 H 0.10 3.78 8.14 -2.38 -0.02 3.77 16 39 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 40 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 41 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 42 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 43 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -80.21 363.37 1.74 -78.48 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.40 Total: 22.21 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 3.76 Total: -23.25 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.69 Total: -82.25 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.96 Total: -42.14 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -80.21 1.74 -78.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293314236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.486 kcal (2) G-P(sol) polarization free energy of solvation -80.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds