Wall clock time and date at job start Tue Mar 31 2020 07:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.86657 * 2 1 4 4 O 1.43745 * 109.88213 * 238.84003 * 2 1 3 5 5 C 1.44379 * 106.97592 * 267.08903 * 4 2 1 6 6 C 1.54990 * 103.48996 * 319.93614 * 5 4 2 7 7 C 1.54094 * 109.87990 * 121.00682 * 2 1 3 8 8 H 1.09001 * 110.49033 * 358.59083 * 7 2 1 9 9 N 1.46903 * 110.49111 * 236.07245 * 7 2 1 10 10 C 1.46903 * 111.00175 * 161.38919 * 9 7 2 11 11 C 1.50701 * 109.47029 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.92987 * 89.99622 * 11 10 9 13 13 C 1.38094 * 120.06985 * 180.02562 * 12 11 10 14 14 C 1.38870 * 119.93126 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.07129 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99800 * 5.91023 * 15 14 13 17 17 H 1.07997 * 120.00494 * 354.90377 * 16 15 14 18 18 C 1.38655 * 119.99940 * 174.89966 * 16 15 14 19 19 N 1.31554 * 120.00142 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99991 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47192 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47015 * 300.00057 * 20 18 16 23 23 H 1.48495 * 109.47388 * 60.00299 * 20 18 16 24 24 C 1.38879 * 119.86193 * 0.27248 * 14 13 12 25 25 C 1.38094 * 119.92965 * 359.44586 * 24 14 13 26 26 H 1.08994 * 109.47164 * 298.98915 * 1 2 3 27 27 H 1.08992 * 109.47263 * 58.99498 * 1 2 3 28 28 H 1.09007 * 109.46972 * 178.98966 * 1 2 3 29 29 H 1.09003 * 109.47090 * 175.54241 * 3 2 1 30 30 H 1.08998 * 109.47601 * 295.54303 * 3 2 1 31 31 H 1.09005 * 109.47052 * 55.54875 * 3 2 1 32 32 H 1.08996 * 110.61627 * 78.43813 * 5 4 2 33 33 H 1.09004 * 110.61453 * 201.43826 * 5 4 2 34 34 H 1.09000 * 110.91076 * 278.83104 * 6 5 4 35 35 H 1.09002 * 110.91126 * 155.21962 * 6 5 4 36 36 H 1.00897 * 110.99781 * 37.43292 * 9 7 2 37 37 H 1.08998 * 109.46890 * 60.00229 * 10 9 7 38 38 H 1.08997 * 109.46717 * 299.99852 * 10 9 7 39 39 H 1.08005 * 119.96459 * 0.02562 * 12 11 10 40 40 H 1.08006 * 120.03400 * 180.02562 * 13 12 11 41 41 H 0.96999 * 120.00157 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.03460 * 179.72649 * 24 14 13 43 43 H 1.08004 * 119.97092 * 180.27347 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0499 1.4390 0.0000 4 8 2.0188 -0.6994 -1.1567 5 6 2.2282 -2.0724 -0.7620 6 6 2.8325 -1.9515 0.6601 7 6 2.0540 -0.7465 1.2420 8 1 1.2238 -1.0886 1.8600 9 7 2.9511 0.1176 2.0209 10 6 3.1063 -0.3849 3.3926 11 6 4.0317 0.5247 4.1590 12 6 3.5179 1.6018 4.8579 13 6 4.3633 2.4375 5.5607 14 6 5.7307 2.1951 5.5657 15 8 6.5644 3.0150 6.2552 16 6 5.9927 3.9725 7.0130 17 1 4.9223 4.1139 6.9876 18 6 6.7789 4.7757 7.8249 19 7 8.0828 4.6039 7.8555 20 14 5.9867 6.1018 8.8752 21 1 7.0364 6.8163 9.6453 22 1 5.2729 7.0659 8.0000 23 1 5.0211 5.4778 9.8151 24 6 6.2441 1.1156 4.8587 25 6 5.3930 0.2802 4.1626 26 1 -0.3633 0.4980 0.8989 27 1 -0.3633 0.5293 -0.8808 28 1 -0.3633 -1.0276 -0.0181 29 1 3.1370 1.4325 0.0799 30 1 1.7567 1.9313 -0.9272 31 1 1.6266 1.9782 0.8475 32 1 1.2815 -2.6117 -0.7322 33 1 2.9297 -2.5630 -1.4367 34 1 3.9004 -1.7381 0.6122 35 1 2.6433 -2.8541 1.2412 36 1 2.6244 1.0721 2.0202 37 1 3.5259 -1.3905 3.3658 38 1 2.1330 -0.4101 3.8825 39 1 2.4543 1.7896 4.8540 40 1 3.9614 3.2783 6.1067 41 1 8.6329 5.1660 8.4232 42 1 7.3076 0.9270 4.8570 43 1 5.7911 -0.5620 3.6161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294757830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:40 Heat of formation + Delta-G solvation = -44.579203 kcal Electronic energy + Delta-G solvation = -22904.463556 eV Core-core repulsion = 19529.374496 eV Total energy + Delta-G solvation = -3375.089060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.30149 -39.03186 -36.97458 -35.27566 -32.93320 -32.31139 -31.23958 -30.16108 -29.05625 -27.45994 -25.82082 -25.14547 -23.82863 -21.95259 -21.62580 -20.36959 -19.79147 -17.98440 -17.10721 -16.56861 -16.22448 -15.79461 -15.01435 -14.78395 -14.55068 -14.37341 -14.17948 -13.66880 -13.56397 -13.36042 -13.21797 -12.72115 -12.61278 -12.45995 -12.38262 -12.03088 -11.94043 -11.80204 -11.61594 -11.30834 -11.25413 -11.10021 -10.85497 -10.70271 -10.66045 -10.48730 -10.43050 -9.83038 -9.34478 -8.84091 -8.41694 -8.17088 -7.18858 -6.45537 -4.04589 2.22473 2.27833 3.12341 3.13163 3.16250 3.62912 3.96018 4.09138 4.33468 4.59106 4.63907 4.77308 4.90475 5.00490 5.08490 5.13517 5.24150 5.28579 5.30573 5.34089 5.43343 5.46408 5.56529 5.60361 5.69266 5.73046 5.74742 5.82088 5.90158 5.94120 6.01042 6.20187 6.21501 6.42655 6.70681 6.78829 6.89554 7.01487 7.07819 7.25965 7.33449 7.42708 7.46283 7.82975 7.99310 8.99908 9.70313 10.72433 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.002866 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.246084 B = 9768.485931 C =10190.020504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 C -0.148 4.148 4 O -0.365 6.365 5 C 0.047 3.953 6 C -0.146 4.146 7 C 0.060 3.940 8 H 0.054 0.946 9 N -0.675 5.675 10 C 0.117 3.883 11 C -0.185 4.185 12 C -0.066 4.066 13 C -0.235 4.235 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.278 1.278 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.194 4.194 25 C -0.051 4.051 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.347 0.653 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.271 0.729 42 H 0.116 0.884 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.845 -10.537 -12.641 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 C -0.205 4.205 4 O -0.284 6.284 5 C -0.030 4.030 6 C -0.184 4.184 7 C -0.050 4.050 8 H 0.072 0.928 9 N -0.310 5.310 10 C -0.011 4.011 11 C -0.186 4.186 12 C -0.085 4.085 13 C -0.254 4.254 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.469 4.469 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.203 1.203 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.214 4.214 25 C -0.070 4.070 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.170 0.830 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.789 -10.605 -12.924 21.048 hybrid contribution -1.386 0.781 1.188 1.986 sum -14.175 -9.824 -11.735 20.860 Atomic orbital electron populations 1.22277 0.95056 1.02277 1.02582 1.22160 0.92958 0.93750 0.85186 1.21873 1.03530 0.93245 1.01855 1.88914 1.86062 1.20567 1.32839 1.23491 0.99441 0.84385 0.95717 1.23220 1.02175 0.97408 0.95609 1.22906 0.93827 0.93894 0.94403 0.92798 1.60899 1.50809 1.05932 1.13372 1.20664 0.96366 0.97528 0.86572 1.19089 0.93999 1.00146 1.05413 1.20578 0.97912 0.94002 0.96019 1.21107 0.93474 1.03612 1.07196 1.19403 0.89487 0.89688 0.91181 1.83981 1.32785 1.38902 1.52405 1.21273 0.93452 1.10639 1.21536 0.89154 1.25285 0.95427 0.98544 0.97222 1.70026 1.03894 1.38360 1.37468 0.85789 0.78516 0.79739 0.79431 1.20260 1.19501 1.19521 1.20228 0.99765 0.96794 1.04571 1.20453 0.92315 0.97702 0.96526 0.91697 0.91653 0.92420 0.89916 0.91990 0.91485 0.92637 0.89015 0.89053 0.90783 0.83044 0.91198 0.95513 0.88010 0.85666 0.91949 0.86567 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.61 37.16 0.32 -1.09 16 2 C 0.10 1.02 1.19 -90.05 -0.11 0.91 16 3 C -0.15 -1.54 7.56 37.16 0.28 -1.25 16 4 O -0.36 -4.27 10.86 -35.23 -0.38 -4.65 16 5 C 0.05 0.42 7.66 38.21 0.29 0.71 16 6 C -0.15 -1.40 6.67 -24.72 -0.16 -1.56 16 7 C 0.06 0.62 2.97 -66.18 -0.20 0.43 16 8 H 0.05 0.53 7.47 -51.93 -0.39 0.14 16 9 N -0.67 -8.21 5.42 -106.37 -0.58 -8.79 16 10 C 0.12 1.53 5.65 -4.97 -0.03 1.50 16 11 C -0.19 -3.08 5.40 -104.58 -0.56 -3.64 16 12 C -0.07 -1.18 9.69 -39.61 -0.38 -1.57 16 13 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 14 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 15 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 16 C -0.39 -10.97 9.49 30.89 0.29 -10.67 16 17 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 20 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 C -0.19 -4.12 9.99 -39.40 -0.39 -4.51 16 25 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.08 0.99 7.42 -51.93 -0.39 0.61 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.62 7.12 -51.93 -0.37 0.25 16 32 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.01 8.06 -51.93 -0.42 0.59 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.35 4.23 5.88 -39.29 -0.23 3.99 16 37 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 38 H 0.03 0.33 8.03 -51.93 -0.42 -0.09 16 39 H 0.10 1.54 8.06 -52.48 -0.42 1.11 16 40 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 43 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -30.46 348.66 -8.27 -38.73 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.55 Total: 6.61 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.75 Total: -22.94 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.18 Total: -33.35 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.38 Total: -9.73 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.46 -8.27 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294757830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.849 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds