Wall clock time and date at job start Tue Mar 31 2020 07:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.86657 * 2 1 4 4 O 1.43745 * 109.88213 * 238.84003 * 2 1 3 5 5 C 1.44379 * 106.97592 * 267.08903 * 4 2 1 6 6 C 1.54990 * 103.48996 * 319.93614 * 5 4 2 7 7 C 1.54094 * 109.87990 * 121.00682 * 2 1 3 8 8 H 1.09001 * 110.49033 * 358.59083 * 7 2 1 9 9 N 1.46903 * 110.49111 * 236.07245 * 7 2 1 10 10 C 1.46903 * 111.00175 * 161.38919 * 9 7 2 11 11 C 1.50701 * 109.47029 * 179.97438 * 10 9 7 12 12 C 1.38302 * 119.92987 * 89.99622 * 11 10 9 13 13 C 1.38094 * 120.06985 * 180.02562 * 12 11 10 14 14 C 1.38870 * 119.93126 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.07129 * 179.97438 * 14 13 12 16 16 C 1.34827 * 116.99800 * 5.91023 * 15 14 13 17 17 H 1.07997 * 120.00494 * 354.90377 * 16 15 14 18 18 C 1.38655 * 119.99940 * 174.89966 * 16 15 14 19 19 N 1.31554 * 120.00142 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99991 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47192 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47015 * 300.00057 * 20 18 16 23 23 H 1.48495 * 109.47388 * 60.00299 * 20 18 16 24 24 C 1.38879 * 119.86193 * 0.27248 * 14 13 12 25 25 C 1.38094 * 119.92965 * 359.44586 * 24 14 13 26 26 H 1.08994 * 109.47164 * 298.98915 * 1 2 3 27 27 H 1.08992 * 109.47263 * 58.99498 * 1 2 3 28 28 H 1.09007 * 109.46972 * 178.98966 * 1 2 3 29 29 H 1.09003 * 109.47090 * 175.54241 * 3 2 1 30 30 H 1.08998 * 109.47601 * 295.54303 * 3 2 1 31 31 H 1.09005 * 109.47052 * 55.54875 * 3 2 1 32 32 H 1.08996 * 110.61627 * 78.43813 * 5 4 2 33 33 H 1.09004 * 110.61453 * 201.43826 * 5 4 2 34 34 H 1.09000 * 110.91076 * 278.83104 * 6 5 4 35 35 H 1.09002 * 110.91126 * 155.21962 * 6 5 4 36 36 H 1.00897 * 110.99781 * 37.43292 * 9 7 2 37 37 H 1.08998 * 109.46890 * 60.00229 * 10 9 7 38 38 H 1.08997 * 109.46717 * 299.99852 * 10 9 7 39 39 H 1.08005 * 119.96459 * 0.02562 * 12 11 10 40 40 H 1.08006 * 120.03400 * 180.02562 * 13 12 11 41 41 H 0.96999 * 120.00157 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.03460 * 179.72649 * 24 14 13 43 43 H 1.08004 * 119.97092 * 180.27347 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0499 1.4390 0.0000 4 8 2.0188 -0.6994 -1.1567 5 6 2.2282 -2.0724 -0.7620 6 6 2.8325 -1.9515 0.6601 7 6 2.0540 -0.7465 1.2420 8 1 1.2238 -1.0886 1.8600 9 7 2.9511 0.1176 2.0209 10 6 3.1063 -0.3849 3.3926 11 6 4.0317 0.5247 4.1590 12 6 3.5179 1.6018 4.8579 13 6 4.3633 2.4375 5.5607 14 6 5.7307 2.1951 5.5657 15 8 6.5644 3.0150 6.2552 16 6 5.9927 3.9725 7.0130 17 1 4.9223 4.1139 6.9876 18 6 6.7789 4.7757 7.8249 19 7 8.0828 4.6039 7.8555 20 14 5.9867 6.1018 8.8752 21 1 7.0364 6.8163 9.6453 22 1 5.2729 7.0659 8.0000 23 1 5.0211 5.4778 9.8151 24 6 6.2441 1.1156 4.8587 25 6 5.3930 0.2802 4.1626 26 1 -0.3633 0.4980 0.8989 27 1 -0.3633 0.5293 -0.8808 28 1 -0.3633 -1.0276 -0.0181 29 1 3.1370 1.4325 0.0799 30 1 1.7567 1.9313 -0.9272 31 1 1.6266 1.9782 0.8475 32 1 1.2815 -2.6117 -0.7322 33 1 2.9297 -2.5630 -1.4367 34 1 3.9004 -1.7381 0.6122 35 1 2.6433 -2.8541 1.2412 36 1 2.6244 1.0721 2.0202 37 1 3.5259 -1.3905 3.3658 38 1 2.1330 -0.4101 3.8825 39 1 2.4543 1.7896 4.8540 40 1 3.9614 3.2783 6.1067 41 1 8.6329 5.1660 8.4232 42 1 7.3076 0.9270 4.8570 43 1 5.7911 -0.5620 3.6161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294757830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:39 Heat of formation + Delta-G solvation = -64.010945 kcal Electronic energy + Delta-G solvation = -22905.306179 eV Core-core repulsion = 19529.374496 eV Total energy + Delta-G solvation = -3375.931683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12929 -40.69428 -38.56376 -36.38404 -34.33063 -33.66473 -32.29793 -31.75377 -30.27602 -28.28465 -27.49691 -26.31428 -24.94455 -23.59373 -22.50488 -21.78797 -20.59446 -19.82968 -18.85644 -17.50832 -17.09783 -16.66833 -16.34099 -16.31591 -15.86506 -15.67574 -15.50670 -15.22044 -15.08680 -14.38716 -14.24324 -14.03693 -13.98943 -13.58483 -13.29590 -13.20466 -13.05225 -12.84760 -12.80923 -12.58788 -12.40151 -12.29175 -12.15720 -12.09434 -11.91125 -11.78445 -11.43764 -11.16689 -10.78286 -10.57546 -9.76333 -9.34285 -8.89329 -8.46533 -6.14927 0.62070 0.69070 1.35024 1.45821 1.51478 2.18303 2.78344 2.91309 3.09952 3.39948 3.54553 3.57132 3.85884 4.03035 4.06285 4.09031 4.20771 4.23369 4.30785 4.38961 4.47171 4.60479 4.64295 4.66830 4.70997 4.77358 4.82812 4.88571 4.91201 5.00212 5.02873 5.10797 5.15881 5.21836 5.27392 5.32615 5.38886 5.59098 5.72728 5.82527 6.03550 6.06118 6.12636 6.26630 6.45848 6.98060 7.79712 8.76709 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031164 B = 0.002866 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.246084 B = 9768.485931 C =10190.020504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 C -0.147 4.147 4 O -0.390 6.390 5 C 0.044 3.956 6 C -0.144 4.144 7 C 0.062 3.938 8 H 0.069 0.931 9 N -0.684 5.684 10 C 0.121 3.879 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.243 4.243 14 C 0.114 3.886 15 O -0.234 6.234 16 C -0.414 4.414 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.272 1.272 22 H -0.257 1.257 23 H -0.257 1.257 24 C -0.207 4.207 25 C -0.047 4.047 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.347 0.653 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.109 0.891 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.235 -12.022 -13.504 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 C -0.205 4.205 4 O -0.310 6.310 5 C -0.033 4.033 6 C -0.183 4.183 7 C -0.048 4.048 8 H 0.087 0.913 9 N -0.320 5.320 10 C -0.007 4.007 11 C -0.158 4.158 12 C -0.080 4.080 13 C -0.262 4.262 14 C 0.064 3.936 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.197 1.197 22 H -0.181 1.181 23 H -0.181 1.181 24 C -0.227 4.227 25 C -0.066 4.066 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.169 0.831 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.220 -12.136 -13.830 24.529 hybrid contribution -0.479 0.961 1.183 1.598 sum -16.700 -11.175 -12.647 23.743 Atomic orbital electron populations 1.22244 0.93594 1.02940 1.03041 1.22256 0.94027 0.93250 0.84878 1.21862 1.02234 0.94016 1.02358 1.88892 1.86382 1.21954 1.33789 1.23651 1.00527 0.83491 0.95589 1.23211 1.01015 0.97852 0.96192 1.22955 0.93946 0.93672 0.94232 0.91309 1.60827 1.52065 1.06317 1.12759 1.20655 0.96323 0.96917 0.86768 1.19607 0.94097 0.99100 1.03001 1.20954 0.99332 0.93162 0.94592 1.21228 0.92866 1.04271 1.07838 1.19946 0.90715 0.90681 0.92297 1.83944 1.34653 1.40746 1.54731 1.21790 0.94247 1.11042 1.21964 0.88066 1.26603 0.95957 1.01067 0.98467 1.70181 1.05814 1.40512 1.39540 0.84651 0.77713 0.76355 0.77516 1.19689 1.18104 1.18107 1.20464 1.00286 0.96933 1.04996 1.20828 0.92689 0.97590 0.95472 0.90658 0.91849 0.91626 0.91913 0.92062 0.90354 0.90941 0.88257 0.90766 0.88966 0.83059 0.89858 0.93501 0.84274 0.86401 0.91850 0.87245 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.61 71.98 0.62 -1.61 16 2 C 0.10 1.70 1.19 -10.42 -0.01 1.69 16 3 C -0.15 -2.79 7.56 71.98 0.54 -2.25 16 4 O -0.39 -8.30 10.86 -148.98 -1.62 -9.92 16 5 C 0.04 0.67 7.66 72.66 0.56 1.22 16 6 C -0.14 -2.28 6.67 31.90 0.21 -2.07 16 7 C 0.06 1.05 2.97 45.91 0.14 1.18 16 8 H 0.07 1.00 7.47 -2.39 -0.02 0.99 16 9 N -0.68 -14.14 5.42 -490.45 -2.66 -16.80 16 10 C 0.12 2.60 5.65 85.56 0.48 3.09 16 11 C -0.16 -4.70 5.40 -19.83 -0.11 -4.80 16 12 C -0.06 -2.04 9.69 22.25 0.22 -1.82 16 13 C -0.24 -10.44 9.17 22.39 0.21 -10.24 16 14 C 0.11 5.71 6.65 22.57 0.15 5.86 16 15 O -0.23 -14.26 9.76 -22.75 -0.22 -14.48 16 16 C -0.41 -24.29 9.49 67.92 0.64 -23.64 16 17 H 0.10 5.41 5.21 -2.91 -0.02 5.39 16 18 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 19 N -0.92 -57.15 13.67 21.61 0.30 -56.85 16 20 Si 1.02 42.89 29.55 68.60 2.03 44.91 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 C -0.21 -8.97 9.99 22.39 0.22 -8.75 16 25 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.81 8.11 -2.38 -0.02 0.79 16 29 H 0.06 1.43 7.42 -2.39 -0.02 1.41 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.26 7.12 -2.38 -0.02 1.25 16 32 H 0.07 0.86 8.11 -2.39 -0.02 0.84 16 33 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.35 7.25 5.88 -89.70 -0.53 6.72 16 37 H 0.08 1.65 7.96 -2.39 -0.02 1.63 16 38 H 0.05 0.88 8.03 -2.39 -0.02 0.86 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -70.98 348.66 2.85 -68.12 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.48 Total: 29.41 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 4.55 Total: -44.40 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.36 Total: -73.65 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.84 Total: -24.41 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.98 2.85 -68.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294757830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.112 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds