Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38158 * 119.97293 * 2 1 4 4 C 1.38716 * 119.94767 * 179.97438 * 3 2 1 5 5 O 1.35895 * 120.05575 * 180.02562 * 4 3 2 6 6 C 1.42908 * 116.99886 * 185.42301 * 5 4 3 7 7 H 1.09003 * 109.46594 * 35.59040 * 6 5 4 8 8 C 1.52993 * 109.47137 * 275.59208 * 6 5 4 9 9 C 1.50697 * 109.46807 * 155.58785 * 6 5 4 10 10 O 1.21288 * 120.00330 * 5.00430 * 9 6 5 11 11 N 1.34778 * 119.99611 * 185.00297 * 9 6 5 12 12 C 1.37098 * 120.00232 * 180.02562 * 11 9 6 13 13 H 1.08008 * 119.99621 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00327 * 179.97438 * 12 11 9 15 15 N 1.31406 * 119.99781 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00052 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46662 * 60.00082 * 16 14 12 18 18 H 1.48494 * 109.46961 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46963 * 299.99985 * 16 14 12 20 20 C 1.38752 * 119.88505 * 359.97438 * 4 3 2 21 21 C 1.38118 * 119.94493 * 0.02562 * 20 4 3 22 22 C 1.38245 * 119.97054 * 180.25191 * 2 1 3 23 23 C 1.50697 * 119.94770 * 0.02562 * 22 2 1 24 24 C 1.53002 * 109.47346 * 125.64151 * 23 22 2 25 25 C 1.53005 * 109.46874 * 245.64364 * 23 22 2 26 26 H 1.09000 * 109.47097 * 95.76327 * 1 2 3 27 27 H 1.09004 * 109.47104 * 215.75490 * 1 2 3 28 28 H 1.08990 * 109.47563 * 335.76139 * 1 2 3 29 29 H 1.08006 * 120.02882 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46991 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.47141 * 299.99965 * 8 6 5 32 32 H 1.08996 * 109.47245 * 59.99665 * 8 6 5 33 33 H 0.96997 * 120.00182 * 0.02562 * 11 9 6 34 34 H 0.97005 * 119.99996 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.02635 * 179.97438 * 20 4 3 36 36 H 1.08005 * 119.97169 * 179.97438 * 21 20 4 37 37 H 1.08997 * 109.47269 * 5.64237 * 23 22 2 38 38 H 1.08996 * 109.47375 * 179.97438 * 24 23 22 39 39 H 1.08995 * 109.47287 * 300.00430 * 24 23 22 40 40 H 1.09006 * 109.46853 * 60.00429 * 24 23 22 41 41 H 1.08997 * 109.47322 * 60.00131 * 25 23 22 42 42 H 1.09004 * 109.46849 * 180.02562 * 25 23 22 43 43 H 1.09003 * 109.47069 * 299.99575 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1968 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2655 2.3721 0.0011 6 6 5.6876 2.2982 -0.1187 7 1 5.9540 1.4742 -0.7807 8 6 6.3042 2.0632 1.2616 9 6 6.2115 3.5907 -0.6896 10 8 5.4553 4.5194 -0.8818 11 7 7.5202 3.7147 -0.9867 12 6 7.9970 4.8907 -1.5055 13 1 7.3237 5.7177 -1.6767 14 6 9.3464 5.0188 -1.8113 15 7 10.1656 4.0128 -1.6026 16 14 9.9958 6.6209 -2.5189 17 1 9.7388 7.7256 -1.5603 18 1 11.4567 6.5009 -2.7565 19 1 9.3081 6.9097 -3.8030 20 6 4.2752 -0.0071 0.0016 21 6 3.5805 -1.2009 0.0016 22 6 2.1976 -1.1976 -0.0053 23 6 1.4422 -2.5016 -0.0116 24 6 1.9144 -3.3588 -1.1877 25 6 1.7009 -3.2471 1.2993 26 1 -0.3633 -0.1032 -1.0225 27 1 -0.3633 -0.8340 0.6005 28 1 -0.3634 0.9370 0.4218 29 1 1.6572 2.1322 0.0004 30 1 7.3889 2.0073 1.1703 31 1 6.0377 2.8872 1.9236 32 1 5.9252 1.1284 1.6745 33 1 8.1249 2.9719 -0.8333 34 1 11.1078 4.1022 -1.8157 35 1 5.3552 -0.0103 0.0016 36 1 4.1178 -2.1378 0.0020 37 1 0.3753 -2.3029 -0.1121 38 1 1.3684 -4.3022 -1.1920 39 1 1.7302 -2.8277 -2.1214 40 1 2.9814 -3.5576 -1.0871 41 1 1.3645 -2.6364 2.1371 42 1 1.1549 -4.1905 1.2945 43 1 2.7680 -3.4458 1.3998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299716741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = -70.644222 kcal Electronic energy + Delta-G solvation = -22938.639879 eV Core-core repulsion = 19562.420555 eV Total energy + Delta-G solvation = -3376.219324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36955 -38.85414 -37.45321 -34.84584 -33.98062 -32.58226 -31.96040 -30.79959 -28.87339 -27.30786 -26.86970 -25.38905 -23.85134 -23.12273 -21.43420 -19.98358 -19.10881 -18.07020 -17.76969 -16.43772 -15.72781 -15.31344 -15.13831 -14.77821 -14.37831 -14.17313 -14.09482 -13.89916 -13.43809 -13.36830 -13.11164 -13.04251 -12.66215 -12.47589 -12.43360 -12.31404 -11.93601 -11.82830 -11.61419 -11.45733 -11.31456 -11.10760 -10.99672 -10.71407 -10.52329 -10.47562 -10.39042 -10.27111 -9.57653 -8.70843 -8.43951 -8.05821 -7.83201 -6.48670 -3.90166 1.40456 1.54163 3.16497 3.22404 3.24182 3.37420 3.74766 3.81816 4.15952 4.58642 4.67141 4.81211 4.90546 5.04048 5.05142 5.11541 5.13674 5.22510 5.30796 5.38730 5.43659 5.50272 5.51780 5.54656 5.65179 5.65844 5.74398 5.77745 5.80372 5.85179 5.98872 6.07396 6.09395 6.16481 6.18925 6.39593 6.46150 6.53676 6.71609 6.90838 7.49057 7.69145 7.97319 8.51706 9.09409 9.42113 9.93014 10.68678 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.003007 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.640794 B = 9310.500376 C = 9680.134444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.047 4.047 3 C -0.154 4.154 4 C 0.141 3.859 5 O -0.281 6.281 6 C 0.075 3.925 7 H 0.083 0.917 8 C -0.172 4.172 9 C 0.444 3.556 10 O -0.574 6.574 11 N -0.553 5.553 12 C -0.302 4.302 13 H 0.105 0.895 14 C 0.025 3.975 15 N -0.899 5.899 16 Si 0.933 3.067 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.217 4.217 21 C -0.071 4.071 22 C -0.126 4.126 23 C -0.055 4.055 24 C -0.144 4.144 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.393 0.607 34 H 0.274 0.726 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.489 -15.658 4.660 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.047 4.047 3 C -0.173 4.173 4 C 0.095 3.905 5 O -0.193 6.193 6 C 0.015 3.985 7 H 0.101 0.899 8 C -0.230 4.230 9 C 0.229 3.771 10 O -0.457 6.457 11 N -0.190 5.190 12 C -0.431 4.431 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.540 5.540 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.235 4.235 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.073 4.073 24 C -0.201 4.201 25 C -0.200 4.200 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.227 0.773 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.849 -14.831 4.508 20.786 hybrid contribution 1.137 0.171 -0.275 1.182 sum -12.712 -14.660 4.233 19.860 Atomic orbital electron populations 1.20825 0.91214 1.02734 1.02345 1.19468 0.95633 0.91706 0.97938 1.20282 0.91026 0.98440 1.07510 1.19145 0.91923 0.85165 0.94286 1.86242 1.19499 1.26901 1.86650 1.22213 0.79035 0.99248 0.97969 0.89886 1.22317 1.01831 1.02683 0.96158 1.19332 0.83712 0.88549 0.85528 1.90556 1.56578 1.40791 1.57787 1.41716 1.05957 1.15656 1.55717 1.19680 0.92895 0.92233 1.38297 0.87769 1.25279 0.95739 0.99134 0.97546 1.69598 1.05099 1.31259 1.48063 0.85877 0.77413 0.81169 0.79562 1.19766 1.20876 1.19783 1.21335 1.00538 0.92191 1.09473 1.20685 0.93405 0.97138 0.97653 1.19488 0.93477 0.93967 1.05696 1.20092 0.99568 0.92112 0.95524 1.21863 1.01370 0.99030 0.97873 1.21852 1.01842 0.99549 0.96795 0.91081 0.91199 0.91458 0.85271 0.90198 0.91033 0.91767 0.77301 0.91643 0.85194 0.86162 0.90222 0.92722 0.92560 0.92540 0.92645 0.92726 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.13 36.00 0.33 -0.72 16 2 C -0.05 -0.58 5.88 -104.65 -0.62 -1.20 16 3 C -0.15 -2.29 9.62 -39.43 -0.38 -2.67 16 4 C 0.14 2.35 6.59 -39.21 -0.26 2.09 16 5 O -0.28 -5.61 9.34 -39.27 -0.37 -5.98 16 6 C 0.08 1.45 2.64 -27.89 -0.07 1.37 16 7 H 0.08 1.43 6.35 -51.93 -0.33 1.10 16 8 C -0.17 -2.77 9.11 37.15 0.34 -2.43 16 9 C 0.44 10.96 7.13 -10.99 -0.08 10.88 16 10 O -0.57 -16.56 16.08 -14.31 -0.23 -16.79 16 11 N -0.55 -14.05 5.25 -10.96 -0.06 -14.11 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 13 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 16 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.22 -3.10 8.22 -39.44 -0.32 -3.42 16 21 C -0.07 -0.86 8.74 -39.60 -0.35 -1.21 16 22 C -0.13 -1.45 4.79 -104.60 -0.50 -1.96 16 23 C -0.05 -0.48 2.82 -91.77 -0.26 -0.74 16 24 C -0.14 -1.18 8.95 37.16 0.33 -0.85 16 25 C -0.14 -1.13 9.06 37.16 0.34 -0.80 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 29 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 30 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.87 6.85 -51.93 -0.36 0.52 16 33 H 0.39 9.37 7.68 -40.82 -0.31 9.06 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.13 1.73 5.41 -52.49 -0.28 1.45 16 36 H 0.12 1.22 7.10 -52.48 -0.37 0.84 16 37 H 0.08 0.64 5.72 -51.93 -0.30 0.34 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.46 7.10 -51.93 -0.37 0.09 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.45 7.72 -51.93 -0.40 0.05 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -31.75 351.26 -7.76 -39.51 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.36 Total: 9.18 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.74 Total: -9.62 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.67 Total: -37.43 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.60 Total: -22.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.75 -7.76 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299716741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.138 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds