Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38158 * 119.97293 * 2 1 4 4 C 1.38716 * 119.94767 * 179.97438 * 3 2 1 5 5 O 1.35895 * 120.05575 * 180.02562 * 4 3 2 6 6 C 1.42908 * 116.99886 * 185.42301 * 5 4 3 7 7 H 1.09003 * 109.46594 * 35.59040 * 6 5 4 8 8 C 1.52993 * 109.47137 * 275.59208 * 6 5 4 9 9 C 1.50697 * 109.46807 * 155.58785 * 6 5 4 10 10 O 1.21288 * 120.00330 * 5.00430 * 9 6 5 11 11 N 1.34778 * 119.99611 * 185.00297 * 9 6 5 12 12 C 1.37098 * 120.00232 * 180.02562 * 11 9 6 13 13 H 1.08008 * 119.99621 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00327 * 179.97438 * 12 11 9 15 15 N 1.31406 * 119.99781 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00052 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46662 * 60.00082 * 16 14 12 18 18 H 1.48494 * 109.46961 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46963 * 299.99985 * 16 14 12 20 20 C 1.38752 * 119.88505 * 359.97438 * 4 3 2 21 21 C 1.38118 * 119.94493 * 0.02562 * 20 4 3 22 22 C 1.38245 * 119.97054 * 180.25191 * 2 1 3 23 23 C 1.50697 * 119.94770 * 0.02562 * 22 2 1 24 24 C 1.53002 * 109.47346 * 125.64151 * 23 22 2 25 25 C 1.53005 * 109.46874 * 245.64364 * 23 22 2 26 26 H 1.09000 * 109.47097 * 95.76327 * 1 2 3 27 27 H 1.09004 * 109.47104 * 215.75490 * 1 2 3 28 28 H 1.08990 * 109.47563 * 335.76139 * 1 2 3 29 29 H 1.08006 * 120.02882 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46991 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.47141 * 299.99965 * 8 6 5 32 32 H 1.08996 * 109.47245 * 59.99665 * 8 6 5 33 33 H 0.96997 * 120.00182 * 0.02562 * 11 9 6 34 34 H 0.97005 * 119.99996 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.02635 * 179.97438 * 20 4 3 36 36 H 1.08005 * 119.97169 * 179.97438 * 21 20 4 37 37 H 1.08997 * 109.47269 * 5.64237 * 23 22 2 38 38 H 1.08996 * 109.47375 * 179.97438 * 24 23 22 39 39 H 1.08995 * 109.47287 * 300.00430 * 24 23 22 40 40 H 1.09006 * 109.46853 * 60.00429 * 24 23 22 41 41 H 1.08997 * 109.47322 * 60.00131 * 25 23 22 42 42 H 1.09004 * 109.46849 * 180.02562 * 25 23 22 43 43 H 1.09003 * 109.47069 * 299.99575 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1968 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2655 2.3721 0.0011 6 6 5.6876 2.2982 -0.1187 7 1 5.9540 1.4742 -0.7807 8 6 6.3042 2.0632 1.2616 9 6 6.2115 3.5907 -0.6896 10 8 5.4553 4.5194 -0.8818 11 7 7.5202 3.7147 -0.9867 12 6 7.9970 4.8907 -1.5055 13 1 7.3237 5.7177 -1.6767 14 6 9.3464 5.0188 -1.8113 15 7 10.1656 4.0128 -1.6026 16 14 9.9958 6.6209 -2.5189 17 1 9.7388 7.7256 -1.5603 18 1 11.4567 6.5009 -2.7565 19 1 9.3081 6.9097 -3.8030 20 6 4.2752 -0.0071 0.0016 21 6 3.5805 -1.2009 0.0016 22 6 2.1976 -1.1976 -0.0053 23 6 1.4422 -2.5016 -0.0116 24 6 1.9144 -3.3588 -1.1877 25 6 1.7009 -3.2471 1.2993 26 1 -0.3633 -0.1032 -1.0225 27 1 -0.3633 -0.8340 0.6005 28 1 -0.3634 0.9370 0.4218 29 1 1.6572 2.1322 0.0004 30 1 7.3889 2.0073 1.1703 31 1 6.0377 2.8872 1.9236 32 1 5.9252 1.1284 1.6745 33 1 8.1249 2.9719 -0.8333 34 1 11.1078 4.1022 -1.8157 35 1 5.3552 -0.0103 0.0016 36 1 4.1178 -2.1378 0.0020 37 1 0.3753 -2.3029 -0.1121 38 1 1.3684 -4.3022 -1.1920 39 1 1.7302 -2.8277 -2.1214 40 1 2.9814 -3.5576 -1.0871 41 1 1.3645 -2.6364 2.1371 42 1 1.1549 -4.1905 1.2945 43 1 2.7680 -3.4458 1.3998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299716741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = -88.517291 kcal Electronic energy + Delta-G solvation = -22939.414913 eV Core-core repulsion = 19562.420555 eV Total energy + Delta-G solvation = -3376.994358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60564 -40.34364 -38.99289 -36.11006 -35.68129 -33.76024 -33.51922 -32.48839 -29.92604 -27.91624 -27.78327 -27.29581 -25.33015 -24.15983 -22.63675 -21.13956 -20.62296 -20.01277 -19.06981 -17.90966 -17.21233 -16.57456 -16.54032 -16.30057 -15.88751 -15.39041 -15.26757 -15.16898 -14.71348 -14.64585 -14.32382 -13.94439 -13.72069 -13.58801 -13.52874 -13.32315 -13.16626 -13.00643 -12.96844 -12.85509 -12.60650 -12.50088 -12.14507 -12.09902 -11.97871 -11.64756 -11.58334 -11.57230 -11.26184 -10.41640 -10.12619 -9.72975 -8.96097 -8.53755 -6.04182 0.37638 0.47221 1.35854 1.40233 1.50852 1.86737 1.91879 2.32970 2.76284 3.10353 3.14160 3.69386 3.79390 3.85982 3.97998 3.98959 4.12210 4.17957 4.29958 4.37365 4.40499 4.54239 4.60398 4.66763 4.67202 4.82142 4.85379 4.88764 4.99696 5.06306 5.07100 5.07276 5.16604 5.28116 5.34665 5.39169 5.45142 5.47239 5.51011 5.78352 5.84354 5.93611 6.40716 6.54283 7.02104 7.39397 7.94558 8.62898 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031325 B = 0.003007 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.640794 B = 9310.500376 C = 9680.134444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.049 4.049 3 C -0.173 4.173 4 C 0.106 3.894 5 O -0.315 6.315 6 C 0.087 3.913 7 H 0.104 0.896 8 C -0.162 4.162 9 C 0.436 3.564 10 O -0.625 6.625 11 N -0.554 5.554 12 C -0.342 4.342 13 H 0.079 0.921 14 C -0.005 4.005 15 N -0.913 5.913 16 Si 0.995 3.005 17 H -0.271 1.271 18 H -0.266 1.266 19 H -0.272 1.272 20 C -0.222 4.222 21 C -0.071 4.071 22 C -0.119 4.119 23 C -0.054 4.054 24 C -0.144 4.144 25 C -0.142 4.142 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.400 0.600 34 H 0.282 0.718 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 -18.143 4.848 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.192 4.192 4 C 0.061 3.939 5 O -0.228 6.228 6 C 0.027 3.973 7 H 0.122 0.878 8 C -0.220 4.220 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.191 5.191 12 C -0.471 4.471 13 H 0.097 0.903 14 C -0.206 4.206 15 N -0.552 5.552 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.190 1.190 19 H -0.197 1.197 20 C -0.240 4.240 21 C -0.089 4.089 22 C -0.120 4.120 23 C -0.072 4.072 24 C -0.201 4.201 25 C -0.199 4.199 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.023 -17.362 4.707 22.809 hybrid contribution 1.106 0.841 -0.340 1.431 sum -12.916 -16.521 4.368 21.421 Atomic orbital electron populations 1.20902 0.88874 1.03780 1.03460 1.19841 0.97367 0.90994 0.96739 1.20472 0.90768 0.99377 1.08542 1.19438 0.92476 0.84906 0.97095 1.86174 1.19562 1.29320 1.87775 1.22023 0.79481 0.96084 0.99668 0.87831 1.22263 1.02113 1.03588 0.93990 1.20327 0.83049 0.90028 0.84336 1.90507 1.57735 1.43268 1.59729 1.41721 1.06530 1.15287 1.55534 1.19655 0.93562 0.92900 1.40955 0.90302 1.26066 0.95200 1.02385 0.96969 1.69646 1.05590 1.32508 1.47485 0.84962 0.77469 0.77132 0.78629 1.19607 1.19010 1.19695 1.21460 1.01006 0.92016 1.09531 1.21006 0.93938 0.97310 0.96612 1.19920 0.93590 0.95052 1.03396 1.20176 0.99828 0.90698 0.96468 1.21866 1.01673 0.99572 0.96997 1.21843 1.02093 1.00126 0.95831 0.89961 0.89179 0.91269 0.86147 0.89377 0.92454 0.88759 0.76498 0.90870 0.84447 0.83677 0.89047 0.90957 0.93409 0.92532 0.93086 0.90976 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.13 71.24 0.65 -1.20 16 2 C -0.05 -1.16 5.88 -19.88 -0.12 -1.27 16 3 C -0.17 -5.25 9.62 22.37 0.22 -5.04 16 4 C 0.11 3.58 6.59 22.51 0.15 3.73 16 5 O -0.31 -13.09 9.34 -73.38 -0.69 -13.78 16 6 C 0.09 3.41 2.64 29.84 0.08 3.49 16 7 H 0.10 3.56 6.35 -2.39 -0.02 3.55 16 8 C -0.16 -5.17 9.11 71.98 0.66 -4.51 16 9 C 0.44 22.42 7.13 87.66 0.63 23.05 16 10 O -0.63 -38.18 16.08 15.94 0.26 -37.93 16 11 N -0.55 -29.01 5.25 -306.98 -1.61 -30.63 16 12 C -0.34 -19.64 9.68 84.04 0.81 -18.83 16 13 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 14 C -0.01 -0.27 5.50 84.93 0.47 0.19 16 15 N -0.91 -48.30 13.05 21.66 0.28 -48.02 16 16 Si 1.00 42.59 29.55 68.60 2.03 44.62 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 C -0.22 -6.12 8.22 22.36 0.18 -5.94 16 21 C -0.07 -1.58 8.74 22.25 0.19 -1.39 16 22 C -0.12 -2.49 4.79 -19.85 -0.10 -2.59 16 23 C -0.05 -0.77 2.82 -11.54 -0.03 -0.80 16 24 C -0.14 -1.89 8.95 71.98 0.64 -1.25 16 25 C -0.14 -1.76 9.06 71.98 0.65 -1.11 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.10 6.56 -2.39 -0.02 1.09 16 28 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 29 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 30 H 0.09 2.64 7.92 -2.39 -0.02 2.62 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.09 2.43 6.85 -2.39 -0.02 2.41 16 33 H 0.40 19.41 7.68 -92.71 -0.71 18.70 16 34 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 35 H 0.14 3.46 5.41 -2.91 -0.02 3.45 16 36 H 0.15 2.48 7.10 -2.91 -0.02 2.46 16 37 H 0.09 1.13 5.72 -2.39 -0.01 1.12 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.74 7.10 -2.38 -0.02 0.73 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.05 0.70 7.72 -2.39 -0.02 0.68 16 Total: -1.00 -71.02 351.26 5.66 -65.36 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.31 Total: 33.82 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.08 Total: -13.45 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.33 Total: -78.64 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.43 Total: -51.70 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -71.02 5.66 -65.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299716741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.160 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds