Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38160 * 119.97674 * 2 1 4 4 C 1.38712 * 119.94864 * 180.22907 * 3 2 1 5 5 O 1.35892 * 120.05946 * 179.76600 * 4 3 2 6 6 C 1.42901 * 116.99924 * 174.48551 * 5 4 3 7 7 H 1.09003 * 109.47277 * 324.86935 * 6 5 4 8 8 C 1.52998 * 109.47487 * 84.87318 * 6 5 4 9 9 C 1.50705 * 109.46955 * 204.87066 * 6 5 4 10 10 O 1.21286 * 120.00084 * 359.97438 * 9 6 5 11 11 N 1.34776 * 119.99837 * 179.97438 * 9 6 5 12 12 C 1.37102 * 120.00000 * 180.02562 * 11 9 6 13 13 H 1.07998 * 119.99930 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00145 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00119 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00084 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47035 * 60.00211 * 16 14 12 18 18 H 1.48497 * 109.47293 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47187 * 300.00177 * 16 14 12 20 20 C 1.38763 * 119.88363 * 359.48870 * 4 3 2 21 21 C 1.38118 * 119.94477 * 0.27820 * 20 4 3 22 22 C 1.38247 * 119.97025 * 179.73945 * 2 1 3 23 23 C 1.50706 * 119.94138 * 0.02562 * 22 2 1 24 24 C 1.53009 * 109.46856 * 114.60760 * 23 22 2 25 25 C 1.53002 * 109.47179 * 234.60474 * 23 22 2 26 26 H 1.08993 * 109.47229 * 264.46156 * 1 2 3 27 27 H 1.09004 * 109.46663 * 24.45950 * 1 2 3 28 28 H 1.09001 * 109.47189 * 144.45463 * 1 2 3 29 29 H 1.08006 * 120.02795 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47525 * 59.99802 * 8 6 5 31 31 H 1.08998 * 109.47586 * 180.02562 * 8 6 5 32 32 H 1.09004 * 109.47206 * 299.99782 * 8 6 5 33 33 H 0.96996 * 120.00318 * 0.02562 * 11 9 6 34 34 H 0.96998 * 120.00217 * 179.97438 * 15 14 12 35 35 H 1.07994 * 120.02362 * 180.29832 * 20 4 3 36 36 H 1.07992 * 119.97456 * 179.97438 * 21 20 4 37 37 H 1.08993 * 109.47236 * 354.60965 * 23 22 2 38 38 H 1.09006 * 109.46918 * 59.99785 * 24 23 22 39 39 H 1.08997 * 109.46717 * 179.97438 * 24 23 22 40 40 H 1.08999 * 109.47045 * 299.99976 * 24 23 22 41 41 H 1.08999 * 109.46731 * 60.00444 * 25 23 22 42 42 H 1.08998 * 109.47044 * 180.02562 * 25 23 22 43 43 H 1.08997 * 109.47122 * 300.00766 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5844 1.1961 -0.0048 5 8 4.2657 2.3719 -0.0096 6 6 5.6879 2.2981 0.1080 7 1 5.9558 1.4708 0.7652 8 6 6.3029 2.0711 -1.2744 9 6 6.2118 3.5880 0.6850 10 8 5.4430 4.4825 0.9674 11 7 7.5347 3.7475 0.8874 12 6 8.0113 4.9207 1.4129 13 1 7.3266 5.7169 1.6651 14 6 9.3752 5.0853 1.6211 15 7 10.2084 4.1167 1.3138 16 14 10.0246 6.6841 2.3364 17 1 9.4278 6.9045 3.6782 18 1 11.5025 6.6073 2.4592 19 1 9.6597 7.8113 1.4410 20 6 4.2752 -0.0073 0.0011 21 6 3.5805 -1.2011 0.0060 22 6 2.1976 -1.1976 0.0054 23 6 1.4421 -2.5016 0.0108 24 6 1.7067 -3.2496 -1.2975 25 6 1.9089 -3.3567 1.1906 26 1 -0.3633 -0.0992 1.0228 27 1 -0.3633 0.9355 -0.4255 28 1 -0.3634 -0.8362 -0.5974 29 1 1.6574 2.1322 -0.0004 30 1 6.0352 2.8983 -1.9316 31 1 7.3877 2.0143 -1.1847 32 1 5.9241 1.1381 -1.6919 33 1 8.1497 3.0322 0.6613 34 1 11.1606 4.2317 1.4587 35 1 5.3552 -0.0105 0.0023 36 1 4.1177 -2.1379 0.0102 37 1 0.3747 -2.3027 0.1061 38 1 2.7742 -3.4485 -1.3927 39 1 1.1606 -4.1929 -1.2934 40 1 1.3742 -2.6405 -2.1380 41 1 1.7203 -2.8237 2.1225 42 1 1.3627 -4.2999 1.1942 43 1 2.9763 -3.5555 1.0953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299716742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -70.444566 kcal Electronic energy + Delta-G solvation = -22938.176720 eV Core-core repulsion = 19561.966054 eV Total energy + Delta-G solvation = -3376.210666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36903 -38.85607 -37.45300 -34.84495 -33.98382 -32.58172 -31.98443 -30.77760 -28.86986 -27.30811 -26.87072 -25.36492 -23.86199 -23.13375 -21.43353 -19.98283 -19.10186 -18.07668 -17.77882 -16.44233 -15.72391 -15.31914 -15.11894 -14.78547 -14.37995 -14.17298 -14.09683 -13.89405 -13.41282 -13.38849 -13.10842 -13.04643 -12.66482 -12.47508 -12.43392 -12.31518 -11.93898 -11.82820 -11.61406 -11.45889 -11.31737 -11.10991 -10.98940 -10.71323 -10.52422 -10.47362 -10.38716 -10.26989 -9.57548 -8.70808 -8.43969 -8.05726 -7.83112 -6.48650 -3.90152 1.40446 1.54241 3.16361 3.22502 3.24232 3.37383 3.75068 3.82202 4.15928 4.58615 4.67133 4.81207 4.90466 5.04062 5.05103 5.11338 5.13622 5.22530 5.30862 5.38786 5.43664 5.49735 5.51537 5.54724 5.65144 5.65792 5.74326 5.77733 5.80302 5.85219 5.99003 6.07344 6.09434 6.16464 6.18932 6.40378 6.46241 6.53674 6.71648 6.90901 7.49129 7.69332 7.97350 8.51729 9.09450 9.42186 9.93062 10.68720 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032027 B = 0.002996 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.065021 B = 9344.341007 C = 9719.163348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.047 4.047 3 C -0.154 4.154 4 C 0.142 3.858 5 O -0.281 6.281 6 C 0.075 3.925 7 H 0.084 0.916 8 C -0.173 4.173 9 C 0.444 3.556 10 O -0.574 6.574 11 N -0.553 5.553 12 C -0.302 4.302 13 H 0.104 0.896 14 C 0.025 3.975 15 N -0.900 5.900 16 Si 0.933 3.067 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.217 4.217 21 C -0.071 4.071 22 C -0.126 4.126 23 C -0.055 4.055 24 C -0.143 4.143 25 C -0.144 4.144 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.393 0.607 34 H 0.274 0.726 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 -15.741 -4.406 21.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.047 4.047 3 C -0.173 4.173 4 C 0.095 3.905 5 O -0.193 6.193 6 C 0.015 3.985 7 H 0.102 0.898 8 C -0.230 4.230 9 C 0.229 3.771 10 O -0.457 6.457 11 N -0.190 5.190 12 C -0.431 4.431 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.540 5.540 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.235 4.235 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.073 4.073 24 C -0.200 4.200 25 C -0.201 4.201 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.227 0.773 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.898 -14.931 -4.211 20.828 hybrid contribution 1.145 0.190 0.225 1.182 sum -12.754 -14.741 -3.986 19.896 Atomic orbital electron populations 1.20828 0.91214 1.02733 1.02347 1.19469 0.95633 0.91706 0.97934 1.20280 0.91028 0.98441 1.07507 1.19143 0.91921 0.85159 0.94266 1.86237 1.19481 1.26934 1.86632 1.22221 0.79034 0.99303 0.97927 0.89805 1.22327 1.01843 1.02714 0.96149 1.19342 0.83679 0.88415 0.85708 1.90556 1.56311 1.43013 1.55852 1.41723 1.04603 1.17026 1.55693 1.19680 0.91675 0.93559 1.38185 0.87771 1.25279 0.95690 0.99209 0.97523 1.69597 1.03939 1.32647 1.47851 0.85878 0.77361 0.81183 0.79598 1.19786 1.20877 1.19766 1.21333 1.00531 0.92194 1.09491 1.20680 0.93404 0.97135 0.97654 1.19489 0.93476 0.93967 1.05705 1.20096 0.99575 0.92112 0.95519 1.21852 1.01832 0.99537 0.96817 1.21863 1.01384 0.99043 0.97846 0.91078 0.91460 0.91193 0.85271 0.91024 0.90173 0.91795 0.77284 0.91643 0.85204 0.86165 0.90216 0.92574 0.92726 0.92644 0.92563 0.92722 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.14 36.01 0.33 -0.72 16 2 C -0.05 -0.58 5.88 -104.65 -0.62 -1.20 16 3 C -0.15 -2.29 9.62 -39.44 -0.38 -2.67 16 4 C 0.14 2.35 6.60 -39.21 -0.26 2.10 16 5 O -0.28 -5.61 9.33 -39.31 -0.37 -5.98 16 6 C 0.08 1.44 2.64 -27.88 -0.07 1.37 16 7 H 0.08 1.44 6.31 -51.93 -0.33 1.11 16 8 C -0.17 -2.77 9.07 37.16 0.34 -2.44 16 9 C 0.44 10.95 7.18 -10.98 -0.08 10.88 16 10 O -0.57 -16.57 16.07 -14.36 -0.23 -16.80 16 11 N -0.55 -14.04 5.18 -10.96 -0.06 -14.10 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 13 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 16 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.22 -3.10 8.24 -39.43 -0.33 -3.42 16 21 C -0.07 -0.86 8.75 -39.61 -0.35 -1.21 16 22 C -0.13 -1.46 4.79 -104.60 -0.50 -1.96 16 23 C -0.05 -0.48 2.83 -91.76 -0.26 -0.74 16 24 C -0.14 -1.13 9.06 37.16 0.34 -0.80 16 25 C -0.14 -1.18 8.94 37.16 0.33 -0.84 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 28 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 29 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.23 7.57 -51.93 -0.39 0.84 16 32 H 0.06 0.87 6.92 -51.93 -0.36 0.51 16 33 H 0.39 9.37 7.32 -40.82 -0.30 9.07 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.13 1.73 5.43 -52.49 -0.29 1.44 16 36 H 0.12 1.22 7.09 -52.49 -0.37 0.84 16 37 H 0.08 0.64 5.70 -51.93 -0.30 0.35 16 38 H 0.06 0.45 7.72 -51.93 -0.40 0.05 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.46 7.10 -51.93 -0.37 0.09 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -31.75 350.54 -7.74 -39.49 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -6.33 Total: 9.21 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.74 Total: -9.63 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.67 Total: -37.42 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.60 Total: -22.78 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.75 -7.74 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299716742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.950 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds