Wall clock time and date at job start Tue Mar 31 2020 07:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.97393 * 2 1 4 4 C 1.38247 * 120.11585 * 179.72442 * 3 2 1 5 5 C 1.38170 * 120.04955 * 0.55480 * 4 3 2 6 6 C 1.50707 * 120.02700 * 179.74821 * 5 4 3 7 7 C 1.53002 * 109.46833 * 59.72254 * 6 5 4 8 8 C 1.52996 * 109.46700 * 299.72510 * 6 5 4 9 9 C 1.38711 * 119.94770 * 359.46932 * 5 4 3 10 10 O 1.35898 * 120.05759 * 180.23010 * 9 5 4 11 11 C 1.42900 * 116.99939 * 174.60169 * 10 9 5 12 12 H 1.08998 * 109.47291 * 324.87316 * 11 10 9 13 13 C 1.53003 * 109.46759 * 84.86871 * 11 10 9 14 14 C 1.50694 * 109.47366 * 204.86840 * 11 10 9 15 15 O 1.21291 * 120.00033 * 0.02562 * 14 11 10 16 16 N 1.34772 * 120.00255 * 179.97438 * 14 11 10 17 17 C 1.37105 * 120.00306 * 180.02562 * 16 14 11 18 18 H 1.08001 * 119.99506 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00243 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99973 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47262 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47123 * 120.00179 * 21 19 17 24 24 H 1.48503 * 109.47386 * 239.99908 * 21 19 17 25 25 C 1.38125 * 119.97344 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46651 * 269.97191 * 1 2 3 27 27 H 1.08997 * 109.46752 * 29.97448 * 1 2 3 28 28 H 1.09008 * 109.46935 * 149.97674 * 1 2 3 29 29 H 1.08000 * 119.94654 * 0.02939 * 3 2 1 30 30 H 1.07996 * 119.97655 * 180.27924 * 4 3 2 31 31 H 1.08995 * 109.47355 * 179.72460 * 6 5 4 32 32 H 1.08997 * 109.47109 * 60.00142 * 7 6 5 33 33 H 1.08999 * 109.47054 * 299.99818 * 7 6 5 34 34 H 1.09006 * 109.46877 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.46739 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.47173 * 299.99666 * 8 6 5 37 37 H 1.08999 * 109.47725 * 59.99853 * 8 6 5 38 38 H 1.09003 * 109.47012 * 179.97438 * 13 11 10 39 39 H 1.08996 * 109.47574 * 299.99908 * 13 11 10 40 40 H 1.08994 * 109.47333 * 60.00234 * 13 11 10 41 41 H 0.97000 * 120.00112 * 0.02562 * 16 14 11 42 42 H 0.97001 * 119.99361 * 179.97438 * 20 19 17 43 43 H 1.08007 * 120.02508 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0058 5 6 4.2752 0.0071 -0.0001 6 6 5.7823 0.0114 0.0005 7 6 6.2897 0.7339 1.2501 8 6 6.2905 0.7345 -1.2484 9 6 3.5846 -1.1959 -0.0006 10 8 4.2658 -2.3718 -0.0015 11 6 3.4942 -3.5687 0.1178 12 1 2.6423 -3.3879 0.7732 13 6 2.9933 -3.9924 -1.2644 14 6 4.3516 -4.6634 0.6987 15 8 5.5095 -4.4405 0.9830 16 7 3.8316 -5.8898 0.9032 17 6 4.6116 -6.8856 1.4322 18 1 5.6428 -6.6873 1.6846 19 6 4.0756 -8.1502 1.6426 20 7 2.8213 -8.3918 1.3340 21 14 5.1385 -9.5071 2.3626 22 1 6.5035 -8.9823 2.6208 23 1 4.5412 -9.9800 3.6374 24 1 5.2156 -10.6376 1.4028 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3632 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6566 2.1324 0.0005 30 1 4.1176 2.1381 0.0103 31 1 6.1486 -1.0151 0.0003 32 1 5.9275 0.2188 2.1398 33 1 5.9234 1.7605 1.2502 34 1 7.3797 0.7374 1.2503 35 1 7.3806 0.7381 -1.2478 36 1 5.9290 0.2198 -2.1387 37 1 5.9242 1.7611 -1.2483 38 1 2.4051 -4.9056 -1.1735 39 1 2.3731 -3.2006 -1.6846 40 1 3.8451 -4.1731 -1.9199 41 1 2.9056 -6.0680 0.6762 42 1 2.4473 -9.2748 1.4806 43 1 1.6570 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299716851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:56 Heat of formation + Delta-G solvation = -72.765736 kcal Electronic energy + Delta-G solvation = -23454.850282 eV Core-core repulsion = 20078.538962 eV Total energy + Delta-G solvation = -3376.311320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41967 -38.58204 -37.04233 -35.67116 -33.99667 -32.06004 -31.36753 -30.65942 -29.71569 -27.01435 -26.64693 -25.36837 -23.89453 -22.63764 -21.60030 -20.00578 -19.24427 -18.12062 -17.34732 -16.40718 -15.69591 -15.36911 -15.16565 -14.72400 -14.20654 -14.04436 -13.81115 -13.75254 -13.64786 -13.32848 -13.24731 -13.00123 -12.65077 -12.33875 -12.19557 -11.95891 -11.90452 -11.68798 -11.61452 -11.42087 -11.19905 -11.15009 -10.95784 -10.58560 -10.45330 -10.37860 -10.34208 -10.27469 -9.59768 -8.62753 -8.41381 -8.05904 -7.85040 -6.49175 -3.90498 1.39770 1.58277 3.12206 3.22840 3.27650 3.38476 3.75307 3.83638 4.15876 4.70805 4.78443 4.90008 4.98059 5.07288 5.12435 5.15854 5.30335 5.35814 5.38593 5.49737 5.52129 5.54465 5.65327 5.70794 5.71258 5.79369 5.81397 5.91073 5.93634 5.96429 6.12598 6.16043 6.20537 6.35936 6.38892 6.41258 6.50797 6.65766 6.75545 6.94715 7.49192 7.68672 7.97432 8.51265 9.09373 9.42029 9.92641 10.68346 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.003952 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.407930 B = 7083.127281 C = 8088.760045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.166 4.166 4 C -0.076 4.076 5 C -0.114 4.114 6 C -0.056 4.056 7 C -0.139 4.139 8 C -0.139 4.139 9 C 0.145 3.855 10 O -0.277 6.277 11 C 0.075 3.925 12 H 0.083 0.917 13 C -0.173 4.173 14 C 0.445 3.555 15 O -0.573 6.573 16 N -0.554 5.554 17 C -0.300 4.300 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.899 5.899 21 Si 0.931 3.069 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.213 4.213 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.393 0.607 42 H 0.272 0.728 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 16.959 -4.409 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.184 4.184 4 C -0.094 4.094 5 C -0.114 4.114 6 C -0.074 4.074 7 C -0.197 4.197 8 C -0.196 4.196 9 C 0.099 3.901 10 O -0.189 6.189 11 C 0.015 3.985 12 H 0.101 0.899 13 C -0.230 4.230 14 C 0.229 3.771 15 O -0.456 6.456 16 N -0.191 5.191 17 C -0.430 4.430 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.540 5.540 21 Si 0.758 3.242 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.232 4.232 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.227 0.773 42 H 0.082 0.918 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.226 16.879 -4.211 17.693 hybrid contribution -0.498 -0.954 0.227 1.099 sum -3.724 15.925 -3.984 16.833 Atomic orbital electron populations 1.20797 0.91323 1.02632 1.02332 1.19642 0.95749 0.92542 0.97424 1.20807 0.94026 0.97183 1.06374 1.20733 0.93740 0.96757 0.98191 1.19194 0.95779 0.90211 1.06240 1.19987 0.90326 1.01878 0.95207 1.21818 1.00621 0.99669 0.97552 1.21824 1.00595 0.99779 0.97418 1.18961 0.90272 0.86339 0.94562 1.86221 1.34739 1.11290 1.86639 1.22219 0.94148 0.84292 0.97869 0.89901 1.22325 1.02241 1.02283 0.96179 1.19333 0.88480 0.83590 0.85669 1.90558 1.17630 1.81619 1.55811 1.41739 1.13844 1.07935 1.55616 1.19779 0.96610 0.88721 1.37841 0.87660 1.25277 0.96317 0.98576 0.97565 1.69619 1.12910 1.23531 1.47953 0.85770 0.79936 0.80069 0.78415 1.19110 1.20650 1.20635 1.21209 0.93078 0.98974 1.09889 0.91126 0.91617 0.91534 0.86425 0.85845 0.88891 0.92527 0.93057 0.92568 0.92588 0.92723 0.93003 0.90212 0.91823 0.91031 0.77314 0.91765 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.05 -0.66 5.88 -104.65 -0.62 -1.28 16 3 C -0.17 -1.94 9.70 -39.56 -0.38 -2.32 16 4 C -0.08 -0.94 8.71 -39.60 -0.34 -1.28 16 5 C -0.11 -1.67 4.79 -104.47 -0.50 -2.17 16 6 C -0.06 -0.78 3.06 -91.77 -0.28 -1.06 16 7 C -0.14 -1.73 9.00 37.16 0.33 -1.39 16 8 C -0.14 -1.62 9.01 37.16 0.33 -1.28 16 9 C 0.15 2.40 6.57 -39.22 -0.26 2.14 16 10 O -0.28 -5.40 8.10 -39.33 -0.32 -5.71 16 11 C 0.07 1.42 2.65 -27.88 -0.07 1.34 16 12 H 0.08 1.42 6.32 -51.93 -0.33 1.09 16 13 C -0.17 -2.75 9.07 37.16 0.34 -2.42 16 14 C 0.44 10.84 7.18 -10.99 -0.08 10.76 16 15 O -0.57 -16.27 16.07 -14.36 -0.23 -16.50 16 16 N -0.55 -13.96 5.18 -10.97 -0.06 -14.02 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 21 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 C -0.21 -3.08 7.89 -39.43 -0.31 -3.39 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.07 0.59 8.09 -51.92 -0.42 0.17 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.24 7.10 -52.49 -0.37 0.87 16 31 H 0.09 1.60 6.99 -51.93 -0.36 1.24 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.54 7.37 -51.93 -0.38 0.16 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.52 7.41 -51.93 -0.38 0.13 16 38 H 0.08 1.22 7.56 -51.93 -0.39 0.83 16 39 H 0.06 0.86 6.90 -51.93 -0.36 0.51 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.39 9.32 7.32 -40.82 -0.30 9.02 16 42 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.13 1.76 5.43 -52.48 -0.28 1.48 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -31.26 352.93 -7.78 -39.04 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.48 Total: 10.32 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.72 Total: -10.97 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.67 Total: -37.24 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.55 Total: -22.22 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.26 -7.78 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299716851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.724 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds