Wall clock time and date at job start Tue Mar 31 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.97393 * 2 1 4 4 C 1.38247 * 120.11585 * 179.72442 * 3 2 1 5 5 C 1.38170 * 120.04955 * 0.55480 * 4 3 2 6 6 C 1.50707 * 120.02700 * 179.74821 * 5 4 3 7 7 C 1.53002 * 109.46833 * 59.72254 * 6 5 4 8 8 C 1.52996 * 109.46700 * 299.72510 * 6 5 4 9 9 C 1.38711 * 119.94770 * 359.46932 * 5 4 3 10 10 O 1.35898 * 120.05759 * 180.23010 * 9 5 4 11 11 C 1.42900 * 116.99939 * 174.60169 * 10 9 5 12 12 H 1.08998 * 109.47291 * 324.87316 * 11 10 9 13 13 C 1.53003 * 109.46759 * 84.86871 * 11 10 9 14 14 C 1.50694 * 109.47366 * 204.86840 * 11 10 9 15 15 O 1.21291 * 120.00033 * 0.02562 * 14 11 10 16 16 N 1.34772 * 120.00255 * 179.97438 * 14 11 10 17 17 C 1.37105 * 120.00306 * 180.02562 * 16 14 11 18 18 H 1.08001 * 119.99506 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00243 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99973 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47262 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47123 * 120.00179 * 21 19 17 24 24 H 1.48503 * 109.47386 * 239.99908 * 21 19 17 25 25 C 1.38125 * 119.97344 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46651 * 269.97191 * 1 2 3 27 27 H 1.08997 * 109.46752 * 29.97448 * 1 2 3 28 28 H 1.09008 * 109.46935 * 149.97674 * 1 2 3 29 29 H 1.08000 * 119.94654 * 0.02939 * 3 2 1 30 30 H 1.07996 * 119.97655 * 180.27924 * 4 3 2 31 31 H 1.08995 * 109.47355 * 179.72460 * 6 5 4 32 32 H 1.08997 * 109.47109 * 60.00142 * 7 6 5 33 33 H 1.08999 * 109.47054 * 299.99818 * 7 6 5 34 34 H 1.09006 * 109.46877 * 180.02562 * 7 6 5 35 35 H 1.09006 * 109.46739 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.47173 * 299.99666 * 8 6 5 37 37 H 1.08999 * 109.47725 * 59.99853 * 8 6 5 38 38 H 1.09003 * 109.47012 * 179.97438 * 13 11 10 39 39 H 1.08996 * 109.47574 * 299.99908 * 13 11 10 40 40 H 1.08994 * 109.47333 * 60.00234 * 13 11 10 41 41 H 0.97000 * 120.00112 * 0.02562 * 16 14 11 42 42 H 0.97001 * 119.99361 * 179.97438 * 20 19 17 43 43 H 1.08007 * 120.02508 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0058 5 6 4.2752 0.0071 -0.0001 6 6 5.7823 0.0114 0.0005 7 6 6.2897 0.7339 1.2501 8 6 6.2905 0.7345 -1.2484 9 6 3.5846 -1.1959 -0.0006 10 8 4.2658 -2.3718 -0.0015 11 6 3.4942 -3.5687 0.1178 12 1 2.6423 -3.3879 0.7732 13 6 2.9933 -3.9924 -1.2644 14 6 4.3516 -4.6634 0.6987 15 8 5.5095 -4.4405 0.9830 16 7 3.8316 -5.8898 0.9032 17 6 4.6116 -6.8856 1.4322 18 1 5.6428 -6.6873 1.6846 19 6 4.0756 -8.1502 1.6426 20 7 2.8213 -8.3918 1.3340 21 14 5.1385 -9.5071 2.3626 22 1 6.5035 -8.9823 2.6208 23 1 4.5412 -9.9800 3.6374 24 1 5.2156 -10.6376 1.4028 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3632 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6566 2.1324 0.0005 30 1 4.1176 2.1381 0.0103 31 1 6.1486 -1.0151 0.0003 32 1 5.9275 0.2188 2.1398 33 1 5.9234 1.7605 1.2502 34 1 7.3797 0.7374 1.2503 35 1 7.3806 0.7381 -1.2478 36 1 5.9290 0.2198 -2.1387 37 1 5.9242 1.7611 -1.2483 38 1 2.4051 -4.9056 -1.1735 39 1 2.3731 -3.2006 -1.6846 40 1 3.8451 -4.1731 -1.9199 41 1 2.9056 -6.0680 0.6762 42 1 2.4473 -9.2748 1.4806 43 1 1.6570 -2.1319 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299716851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:55 Heat of formation + Delta-G solvation = -90.169010 kcal Electronic energy + Delta-G solvation = -23455.604945 eV Core-core repulsion = 20078.538962 eV Total energy + Delta-G solvation = -3377.065982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66273 -40.23507 -38.50985 -36.67194 -36.07064 -33.79136 -32.66858 -32.03122 -30.82789 -27.97982 -27.56646 -27.30030 -25.36569 -23.75517 -22.77816 -21.27050 -20.82987 -20.10794 -18.63182 -17.96786 -17.18278 -16.61552 -16.51838 -16.44060 -15.82388 -15.42348 -15.08566 -15.04145 -14.68521 -14.65944 -14.38132 -14.10836 -14.06439 -13.59295 -13.40933 -13.21522 -13.06626 -12.97776 -12.89295 -12.72900 -12.51340 -12.46886 -12.32894 -12.13794 -12.06991 -11.75995 -11.59606 -11.50473 -11.41104 -10.41784 -10.11907 -9.60129 -8.97349 -8.54018 -6.04161 0.39485 0.52846 1.32633 1.40311 1.54119 1.85259 1.95278 2.33345 2.80620 3.10802 3.14009 3.67056 3.75576 3.87236 3.96709 4.03592 4.15694 4.20186 4.24136 4.33797 4.48590 4.55955 4.57739 4.64610 4.74268 4.80404 4.85194 4.87280 4.90682 4.97031 5.03883 5.05631 5.16747 5.28305 5.35197 5.36259 5.40131 5.50506 5.66420 5.69900 5.85841 5.97276 6.41958 6.55205 7.02542 7.39705 7.94780 8.63182 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.003952 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.407930 B = 7083.127281 C = 8088.760045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.158 4.158 4 C -0.074 4.074 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.135 4.135 8 C -0.132 4.132 9 C 0.106 3.894 10 O -0.308 6.308 11 C 0.087 3.913 12 H 0.101 0.899 13 C -0.161 4.161 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.555 5.555 17 C -0.340 4.340 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.913 5.913 21 Si 0.995 3.005 22 H -0.275 1.275 23 H -0.268 1.268 24 H -0.267 1.267 25 C -0.222 4.222 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.400 0.600 42 H 0.281 0.719 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 18.748 -4.736 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.058 4.058 3 C -0.176 4.176 4 C -0.091 4.091 5 C -0.129 4.129 6 C -0.077 4.077 7 C -0.192 4.192 8 C -0.189 4.189 9 C 0.061 3.939 10 O -0.221 6.221 11 C 0.027 3.973 12 H 0.119 0.881 13 C -0.219 4.219 14 C 0.223 3.777 15 O -0.510 6.510 16 N -0.192 5.192 17 C -0.469 4.469 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.553 5.553 21 Si 0.818 3.182 22 H -0.200 1.200 23 H -0.193 1.193 24 H -0.192 1.192 25 C -0.241 4.241 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.235 0.765 42 H 0.091 0.909 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.092 18.671 -4.553 19.881 hybrid contribution 0.022 -1.417 0.337 1.456 sum -5.069 17.254 -4.216 18.471 Atomic orbital electron populations 1.20861 0.88983 1.03900 1.03188 1.20050 0.97488 0.91998 0.96229 1.21255 0.93906 0.98281 1.04120 1.21053 0.94350 0.96667 0.97066 1.19452 0.96046 0.90692 1.06759 1.19950 0.90598 0.99861 0.97256 1.21788 1.01122 1.00568 0.95701 1.21774 1.01072 1.00557 0.95516 1.19335 0.91463 0.85664 0.97415 1.86175 1.35978 1.12213 1.87710 1.21998 0.92912 0.82971 0.99407 0.88143 1.22256 1.02033 1.03513 0.94093 1.20320 0.88469 0.84378 0.84497 1.90511 1.20132 1.82635 1.57714 1.41741 1.13889 1.08092 1.55483 1.19721 0.96255 0.90430 1.40454 0.90338 1.26055 0.97581 0.99921 0.97049 1.69664 1.13706 1.24513 1.47426 0.84848 0.77838 0.77228 0.78276 1.19954 1.19266 1.19220 1.21347 0.92242 1.00239 1.10246 0.90336 0.89507 0.91213 0.83065 0.83037 0.93499 0.94679 0.90351 0.91813 0.91835 0.93826 0.90501 0.89500 0.88951 0.92436 0.76545 0.90917 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.02 16 2 C -0.06 -1.28 5.88 -19.88 -0.12 -1.39 16 3 C -0.16 -3.12 9.70 22.28 0.22 -2.90 16 4 C -0.07 -1.61 8.71 22.26 0.19 -1.42 16 5 C -0.13 -3.76 4.79 -19.77 -0.09 -3.86 16 6 C -0.06 -1.68 3.06 -11.54 -0.04 -1.71 16 7 C -0.13 -3.30 9.00 71.98 0.65 -2.65 16 8 C -0.13 -2.97 9.01 71.98 0.65 -2.33 16 9 C 0.11 3.58 6.57 22.51 0.15 3.73 16 10 O -0.31 -12.67 8.10 -73.36 -0.59 -13.26 16 11 C 0.09 3.42 2.65 29.85 0.08 3.50 16 12 H 0.10 3.53 6.32 -2.39 -0.02 3.51 16 13 C -0.16 -5.20 9.07 71.98 0.65 -4.55 16 14 C 0.44 22.47 7.18 87.66 0.63 23.10 16 15 O -0.62 -37.91 16.07 15.97 0.26 -37.66 16 16 N -0.55 -29.12 5.18 -306.99 -1.59 -30.71 16 17 C -0.34 -19.54 9.68 84.04 0.81 -18.72 16 18 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 19 C -0.01 -0.28 5.50 84.92 0.47 0.19 16 20 N -0.91 -48.36 13.05 21.66 0.28 -48.08 16 21 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 C -0.22 -6.22 7.89 22.37 0.18 -6.05 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 29 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 30 H 0.15 2.40 7.10 -2.91 -0.02 2.38 16 31 H 0.05 1.76 6.99 -2.39 -0.02 1.75 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.47 7.37 -2.39 -0.02 1.45 16 34 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.33 7.41 -2.39 -0.02 1.31 16 38 H 0.09 2.64 7.56 -2.39 -0.02 2.62 16 39 H 0.09 2.43 6.90 -2.39 -0.02 2.42 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.40 19.47 7.32 -92.71 -0.68 18.79 16 42 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.13 3.48 5.43 -2.91 -0.02 3.47 16 Total: -1.00 -71.38 352.93 5.86 -65.53 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.33 Total: 35.58 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 5.14 Total: -16.09 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.31 Total: -78.79 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.34 Total: -50.92 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -71.38 5.86 -65.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299716851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.641 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds