Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.06563 * 2 1 4 4 C 1.53988 * 109.92194 * 238.79179 * 2 1 3 5 5 H 1.08997 * 110.30680 * 120.50524 * 4 2 1 6 6 C 1.53004 * 110.30788 * 358.34064 * 4 2 1 7 7 F 1.39896 * 109.47184 * 61.43804 * 6 4 2 8 8 F 1.39903 * 109.47062 * 181.44281 * 6 4 2 9 9 F 1.39905 * 109.46926 * 301.43764 * 6 4 2 10 10 C 1.54597 * 105.14273 * 239.42075 * 4 2 1 11 11 C 1.54939 * 102.92094 * 338.04596 * 10 4 2 12 12 N 1.47906 * 109.91745 * 121.20157 * 2 1 3 13 13 C 1.46901 * 111.00142 * 265.20252 * 12 2 1 14 14 C 1.53001 * 109.47136 * 164.62763 * 13 12 2 15 15 C 1.50698 * 115.54826 * 279.99459 * 14 13 12 16 16 H 1.08004 * 119.99903 * 115.80300 * 15 14 13 17 17 C 1.37880 * 120.00198 * 295.79413 * 15 14 13 18 18 N 1.31516 * 119.99812 * 174.01300 * 17 15 14 19 19 Si 1.86802 * 119.99814 * 354.02113 * 17 15 14 20 20 H 1.48492 * 109.47164 * 94.72447 * 19 17 15 21 21 H 1.48504 * 109.46622 * 214.72243 * 19 17 15 22 22 H 1.48503 * 109.46987 * 334.72010 * 19 17 15 23 23 C 1.53004 * 117.49631 * 134.28987 * 14 13 12 24 24 C 1.53000 * 117.49728 * 65.66650 * 14 13 12 25 25 H 1.08991 * 109.47713 * 302.57636 * 1 2 3 26 26 H 1.08998 * 109.47318 * 62.58373 * 1 2 3 27 27 H 1.09008 * 109.47051 * 182.57751 * 1 2 3 28 28 H 1.08992 * 109.47392 * 179.74780 * 3 2 1 29 29 H 1.09003 * 109.47188 * 299.75295 * 3 2 1 30 30 H 1.09010 * 109.46943 * 59.74863 * 3 2 1 31 31 H 1.09001 * 110.72168 * 96.39861 * 10 4 2 32 32 H 1.08994 * 110.72530 * 219.50738 * 10 4 2 33 33 H 1.09005 * 110.66093 * 278.97690 * 11 10 4 34 34 H 1.09000 * 110.66866 * 155.84777 * 11 10 4 35 35 H 1.09000 * 109.47177 * 44.62780 * 13 12 2 36 36 H 1.08994 * 109.47000 * 284.62791 * 13 12 2 37 37 H 0.97001 * 119.99439 * 179.97438 * 18 17 15 38 38 H 1.09002 * 117.49899 * 359.97438 * 23 14 13 39 39 H 1.08998 * 117.49569 * 145.02041 * 23 14 13 40 40 H 1.09000 * 117.49692 * 214.97600 * 24 14 13 41 41 H 1.08992 * 117.49996 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0547 -0.7501 -1.2382 5 1 2.6714 -0.0895 -1.8475 6 6 0.8871 -1.2976 -2.0617 7 9 0.0925 -0.2360 -2.5074 8 9 1.3836 -2.0030 -3.1632 9 9 0.1177 -2.1546 -1.2674 10 6 2.9060 -1.9117 -0.6760 11 6 3.2681 -1.4184 0.7474 12 7 2.0338 -0.7204 1.1894 13 6 2.3210 0.2124 2.2874 14 6 2.4656 -0.5684 3.5952 15 6 1.1735 -0.9645 4.2619 16 1 0.9190 -2.0087 4.3689 17 6 0.3163 0.0060 4.7355 18 7 -0.8625 -0.3327 5.2102 19 14 0.8292 1.8019 4.7027 20 1 0.3121 2.4419 3.4666 21 1 0.2720 2.4975 5.8906 22 1 2.3112 1.8939 4.7252 23 6 3.6495 -0.2190 4.4993 24 6 3.6472 -1.5329 3.7152 25 1 -0.3634 0.5533 0.8659 26 1 -0.3634 0.4732 -0.9122 27 1 -0.3633 -1.0267 0.0462 28 1 3.1448 1.4259 0.0045 29 1 1.7005 1.9534 -0.8922 30 1 1.6932 1.9561 0.8878 31 1 2.3215 -2.8305 -0.6287 32 1 3.8038 -2.0577 -1.2766 33 1 4.1097 -0.7266 0.7122 34 1 3.4888 -2.2614 1.4022 35 1 1.5037 0.9276 2.3797 36 1 3.2484 0.7454 2.0780 37 1 -1.4654 0.3501 5.5437 38 1 4.3256 0.5667 4.1621 39 1 3.4939 -0.2756 5.5766 40 1 3.4902 -2.4538 4.2767 41 1 4.3218 -1.6109 2.8626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302497968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = -101.374261 kcal Electronic energy + Delta-G solvation = -25952.373970 eV Core-core repulsion = 22032.965351 eV Total energy + Delta-G solvation = -3919.408619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.18878 -47.63694 -47.50947 -39.82581 -36.67077 -32.43396 -32.18210 -31.85251 -27.52920 -27.23231 -25.91394 -24.33061 -23.64953 -21.69318 -21.01196 -19.35572 -18.72332 -18.45203 -18.16999 -16.99123 -16.34317 -15.57759 -15.13418 -14.88442 -14.65983 -14.35746 -14.12995 -14.11412 -13.72999 -13.61230 -13.58064 -13.11061 -12.98318 -12.76536 -12.65370 -12.33958 -11.97673 -11.64122 -11.46393 -11.23832 -11.05256 -11.03254 -10.76456 -10.73498 -10.47104 -10.37381 -10.31928 -10.01466 -9.40573 -8.95904 -8.62040 -8.34598 -7.80711 -6.01711 -3.98659 2.82330 3.25787 3.38804 3.44589 3.83361 3.92829 4.05255 4.23080 4.46751 4.66612 4.71729 4.98691 5.10703 5.23067 5.28122 5.32676 5.35195 5.51847 5.61108 5.77158 5.78649 5.91401 6.02254 6.03144 6.07735 6.13546 6.17793 6.20452 6.26325 6.38087 6.49655 6.57197 6.77073 6.81601 7.14858 7.17279 7.39548 7.66009 7.85332 8.62334 9.03706 9.61924 11.10949 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.006283 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.151587 B = 4455.142476 C = 4879.705951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.100 3.900 3 C -0.173 4.173 4 C -0.139 4.139 5 H 0.113 0.887 6 C 0.463 3.537 7 F -0.180 7.180 8 F -0.189 7.189 9 F -0.166 7.166 10 C -0.118 4.118 11 C 0.036 3.964 12 N -0.475 5.475 13 C 0.085 3.915 14 C 0.015 3.985 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.899 5.899 19 Si 0.861 3.139 20 H -0.282 1.282 21 H -0.293 1.293 22 H -0.251 1.251 23 C -0.199 4.199 24 C -0.186 4.186 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.017 0.983 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 0.930 -14.793 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.010 3.990 3 C -0.232 4.232 4 C -0.159 4.159 5 H 0.132 0.868 6 C 0.409 3.591 7 F -0.162 7.162 8 F -0.170 7.170 9 F -0.147 7.147 10 C -0.156 4.156 11 C -0.091 4.091 12 N -0.198 5.198 13 C -0.043 4.043 14 C 0.013 3.987 15 C -0.500 4.500 16 H 0.094 0.906 17 C -0.125 4.125 18 N -0.537 5.537 19 Si 0.689 3.311 20 H -0.208 1.208 21 H -0.220 1.220 22 H -0.174 1.174 23 C -0.237 4.237 24 C -0.223 4.223 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.144 0.624 -14.514 16.189 hybrid contribution 0.572 1.670 -0.338 1.798 sum 7.717 2.294 -14.852 16.894 Atomic orbital electron populations 1.22865 0.92798 1.05711 1.03278 1.21685 0.97088 0.91781 0.88425 1.22513 1.00857 0.96705 1.03087 1.23473 0.94325 1.00440 0.97698 0.86844 1.20355 0.84626 0.75888 0.78241 1.93060 1.76437 1.56641 1.90048 1.93157 1.87501 1.79978 1.56391 1.93124 1.77130 1.71598 1.72838 1.22599 0.99213 0.96995 0.96760 1.23425 0.92018 0.99435 0.94267 1.64820 1.25412 1.26000 1.03590 1.22168 0.97731 0.93492 0.90902 1.19314 0.90191 0.97168 0.91997 1.20225 0.99627 0.94784 1.35390 0.90630 1.24879 0.94327 0.98344 0.94901 1.69906 1.07625 1.33641 1.42525 0.87108 0.80563 0.86217 0.77182 1.20829 1.21954 1.17433 1.23118 1.04340 0.97582 0.98686 1.22877 1.03494 0.94125 1.01784 0.91538 0.90846 0.89009 0.92591 0.92072 0.91035 0.89466 0.90134 0.94179 0.88399 0.90929 0.96523 0.92815 0.91765 0.89684 0.89931 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 7.52 37.16 0.28 -2.94 16 2 C 0.10 1.55 0.79 -130.53 -0.10 1.45 16 3 C -0.17 -2.44 7.16 37.16 0.27 -2.17 16 4 C -0.14 -1.75 2.65 -89.26 -0.24 -1.99 16 5 H 0.11 1.17 7.68 -51.93 -0.40 0.77 16 6 C 0.46 6.14 2.33 37.16 0.09 6.22 16 7 F -0.18 -2.42 14.27 2.25 0.03 -2.38 16 8 F -0.19 -2.37 17.14 2.25 0.04 -2.33 16 9 F -0.17 -2.53 13.40 2.25 0.03 -2.50 16 10 C -0.12 -1.43 6.36 -24.87 -0.16 -1.59 16 11 C 0.04 0.53 5.01 -1.90 -0.01 0.52 16 12 N -0.48 -8.59 4.83 -215.00 -1.04 -9.62 16 13 C 0.08 1.70 3.04 -3.82 -0.01 1.69 16 14 C 0.01 0.33 0.99 -155.66 -0.15 0.17 16 15 C -0.46 -12.75 9.40 -34.44 -0.32 -13.08 16 16 H 0.08 2.32 8.06 -52.48 -0.42 1.89 16 17 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 18 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 19 Si 0.86 21.05 24.98 -169.99 -4.25 16.80 16 20 H -0.28 -6.73 7.05 56.52 0.40 -6.33 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.25 -5.74 5.78 56.52 0.33 -5.42 16 23 C -0.20 -4.12 8.09 -26.73 -0.22 -4.34 16 24 C -0.19 -3.64 8.73 -26.73 -0.23 -3.87 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.10 5.36 -51.93 -0.28 0.82 16 27 H 0.09 1.66 5.38 -51.92 -0.28 1.38 16 28 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.14 6.27 -51.92 -0.33 0.82 16 31 H 0.09 1.13 7.30 -51.93 -0.38 0.75 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.54 7.74 -51.93 -0.40 0.14 16 34 H 0.10 1.49 6.13 -51.93 -0.32 1.17 16 35 H 0.07 1.61 3.92 -51.93 -0.20 1.40 16 36 H 0.02 0.31 6.75 -51.93 -0.35 -0.04 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 38 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 39 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.07 1.23 5.83 -51.93 -0.30 0.93 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -29.42 311.36 -6.44 -35.87 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.81 Total: 3.87 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.91 Total: -17.83 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.26 Total: -36.18 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.10 Total: -7.22 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.25 Total: 16.80 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.42 -6.44 -35.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302497968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.507 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds