Wall clock time and date at job start Tue Mar 31 2020 07:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.06563 * 2 1 4 4 C 1.53988 * 109.92194 * 238.79179 * 2 1 3 5 5 H 1.08997 * 110.30680 * 120.50524 * 4 2 1 6 6 C 1.53004 * 110.30788 * 358.34064 * 4 2 1 7 7 F 1.39896 * 109.47184 * 61.43804 * 6 4 2 8 8 F 1.39903 * 109.47062 * 181.44281 * 6 4 2 9 9 F 1.39905 * 109.46926 * 301.43764 * 6 4 2 10 10 C 1.54597 * 105.14273 * 239.42075 * 4 2 1 11 11 C 1.54939 * 102.92094 * 338.04596 * 10 4 2 12 12 N 1.47906 * 109.91745 * 121.20157 * 2 1 3 13 13 C 1.46901 * 111.00142 * 265.20252 * 12 2 1 14 14 C 1.53001 * 109.47136 * 164.62763 * 13 12 2 15 15 C 1.50698 * 115.54826 * 279.99459 * 14 13 12 16 16 H 1.08004 * 119.99903 * 115.80300 * 15 14 13 17 17 C 1.37880 * 120.00198 * 295.79413 * 15 14 13 18 18 N 1.31516 * 119.99812 * 174.01300 * 17 15 14 19 19 Si 1.86802 * 119.99814 * 354.02113 * 17 15 14 20 20 H 1.48492 * 109.47164 * 94.72447 * 19 17 15 21 21 H 1.48504 * 109.46622 * 214.72243 * 19 17 15 22 22 H 1.48503 * 109.46987 * 334.72010 * 19 17 15 23 23 C 1.53004 * 117.49631 * 134.28987 * 14 13 12 24 24 C 1.53000 * 117.49728 * 65.66650 * 14 13 12 25 25 H 1.08991 * 109.47713 * 302.57636 * 1 2 3 26 26 H 1.08998 * 109.47318 * 62.58373 * 1 2 3 27 27 H 1.09008 * 109.47051 * 182.57751 * 1 2 3 28 28 H 1.08992 * 109.47392 * 179.74780 * 3 2 1 29 29 H 1.09003 * 109.47188 * 299.75295 * 3 2 1 30 30 H 1.09010 * 109.46943 * 59.74863 * 3 2 1 31 31 H 1.09001 * 110.72168 * 96.39861 * 10 4 2 32 32 H 1.08994 * 110.72530 * 219.50738 * 10 4 2 33 33 H 1.09005 * 110.66093 * 278.97690 * 11 10 4 34 34 H 1.09000 * 110.66866 * 155.84777 * 11 10 4 35 35 H 1.09000 * 109.47177 * 44.62780 * 13 12 2 36 36 H 1.08994 * 109.47000 * 284.62791 * 13 12 2 37 37 H 0.97001 * 119.99439 * 179.97438 * 18 17 15 38 38 H 1.09002 * 117.49899 * 359.97438 * 23 14 13 39 39 H 1.08998 * 117.49569 * 145.02041 * 23 14 13 40 40 H 1.09000 * 117.49692 * 214.97600 * 24 14 13 41 41 H 1.08992 * 117.49996 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 6 2.0547 -0.7501 -1.2382 5 1 2.6714 -0.0895 -1.8475 6 6 0.8871 -1.2976 -2.0617 7 9 0.0925 -0.2360 -2.5074 8 9 1.3836 -2.0030 -3.1632 9 9 0.1177 -2.1546 -1.2674 10 6 2.9060 -1.9117 -0.6760 11 6 3.2681 -1.4184 0.7474 12 7 2.0338 -0.7204 1.1894 13 6 2.3210 0.2124 2.2874 14 6 2.4656 -0.5684 3.5952 15 6 1.1735 -0.9645 4.2619 16 1 0.9190 -2.0087 4.3689 17 6 0.3163 0.0060 4.7355 18 7 -0.8625 -0.3327 5.2102 19 14 0.8292 1.8019 4.7027 20 1 0.3121 2.4419 3.4666 21 1 0.2720 2.4975 5.8906 22 1 2.3112 1.8939 4.7252 23 6 3.6495 -0.2190 4.4993 24 6 3.6472 -1.5329 3.7152 25 1 -0.3634 0.5533 0.8659 26 1 -0.3634 0.4732 -0.9122 27 1 -0.3633 -1.0267 0.0462 28 1 3.1448 1.4259 0.0045 29 1 1.7005 1.9534 -0.8922 30 1 1.6932 1.9561 0.8878 31 1 2.3215 -2.8305 -0.6287 32 1 3.8038 -2.0577 -1.2766 33 1 4.1097 -0.7266 0.7122 34 1 3.4888 -2.2614 1.4022 35 1 1.5037 0.9276 2.3797 36 1 3.2484 0.7454 2.0780 37 1 -1.4654 0.3501 5.5437 38 1 4.3256 0.5667 4.1621 39 1 3.4939 -0.2756 5.5766 40 1 3.4902 -2.4538 4.2767 41 1 4.3218 -1.6109 2.8626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302497968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:33 Heat of formation + Delta-G solvation = -120.263493 kcal Electronic energy + Delta-G solvation = -25953.193068 eV Core-core repulsion = 22032.965351 eV Total energy + Delta-G solvation = -3920.227717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.24619 -48.65370 -48.61120 -41.05836 -38.27982 -34.22983 -33.54445 -33.22110 -28.89510 -28.41304 -27.66919 -25.88614 -24.76711 -23.17415 -22.19924 -20.92548 -20.19455 -19.51861 -19.23375 -18.21801 -18.07089 -16.90317 -16.72461 -16.30245 -15.82496 -15.45991 -15.36775 -15.22537 -15.18701 -14.96487 -14.75345 -14.71077 -14.26690 -14.04478 -13.92779 -13.64796 -13.42665 -13.00663 -12.90418 -12.74320 -12.46779 -12.35231 -12.14317 -12.02949 -11.88265 -11.85427 -11.66773 -11.60539 -11.26770 -10.87620 -10.47393 -10.19809 -9.08897 -8.21809 -6.22470 1.31205 1.37833 1.50607 1.79775 2.40303 2.80863 2.84909 2.91355 3.07272 3.13852 3.50008 3.66155 3.69245 3.98134 4.14020 4.19418 4.25017 4.30277 4.39064 4.49428 4.54821 4.57040 4.61990 4.68264 4.80412 4.90449 4.91729 4.95783 5.00514 5.06902 5.14687 5.15844 5.19788 5.40711 5.52395 5.57132 5.78559 6.19079 6.29982 6.43533 6.82307 7.41874 8.95070 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.006283 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.151587 B = 4455.142476 C = 4879.705951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 C -0.170 4.170 4 C -0.130 4.130 5 H 0.150 0.850 6 C 0.461 3.539 7 F -0.182 7.182 8 F -0.182 7.182 9 F -0.184 7.184 10 C -0.111 4.111 11 C 0.034 3.966 12 N -0.511 5.511 13 C 0.097 3.903 14 C -0.016 4.016 15 C -0.461 4.461 16 H 0.021 0.979 17 C 0.017 3.983 18 N -0.956 5.956 19 Si 0.927 3.073 20 H -0.275 1.275 21 H -0.301 1.301 22 H -0.219 1.219 23 C -0.191 4.191 24 C -0.166 4.166 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.261 0.739 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.268 2.505 -17.287 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.006 3.994 3 C -0.228 4.228 4 C -0.149 4.149 5 H 0.168 0.832 6 C 0.407 3.593 7 F -0.163 7.163 8 F -0.163 7.163 9 F -0.165 7.165 10 C -0.149 4.149 11 C -0.093 4.093 12 N -0.235 5.235 13 C -0.031 4.031 14 C -0.017 4.017 15 C -0.498 4.498 16 H 0.039 0.961 17 C -0.179 4.179 18 N -0.597 5.597 19 Si 0.752 3.248 20 H -0.201 1.201 21 H -0.228 1.228 22 H -0.141 1.141 23 C -0.229 4.229 24 C -0.203 4.203 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.699 2.182 -17.025 20.226 hybrid contribution -0.588 1.006 0.425 1.240 sum 10.111 3.187 -16.600 19.696 Atomic orbital electron populations 1.22863 0.95013 1.03999 1.02500 1.21685 0.95508 0.93290 0.88871 1.22470 1.02117 0.95161 1.03045 1.23495 0.94060 1.00808 0.96566 0.83209 1.20537 0.84690 0.75655 0.78382 1.93047 1.76645 1.56631 1.90016 1.93170 1.87303 1.79858 1.56006 1.93100 1.77750 1.72223 1.73438 1.22608 1.00431 0.95987 0.95830 1.23475 0.91356 0.99198 0.95299 1.64652 1.27811 1.26517 1.04471 1.21867 0.97958 0.93005 0.90268 1.19245 0.88478 1.00285 0.93667 1.20414 1.02145 0.92236 1.35044 0.96110 1.25729 0.94102 1.03361 0.94710 1.70084 1.09417 1.35161 1.45013 0.86070 0.81921 0.80059 0.76795 1.20147 1.22829 1.14097 1.23131 1.03074 0.99051 0.97688 1.22917 1.01981 0.93029 1.02334 0.95069 0.88970 0.90955 0.90390 0.89951 0.93375 0.90919 0.86280 0.91744 0.89524 0.93499 0.93688 0.93072 0.88553 0.91217 0.91456 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.36 7.52 71.98 0.54 -5.82 16 2 C 0.10 2.76 0.79 3.67 0.00 2.76 16 3 C -0.17 -4.15 7.16 71.98 0.52 -3.64 16 4 C -0.13 -2.77 2.65 -9.91 -0.03 -2.79 16 5 H 0.15 2.18 7.68 -2.39 -0.02 2.16 16 6 C 0.46 11.17 2.33 71.98 0.17 11.34 16 7 F -0.18 -4.48 14.27 44.97 0.64 -3.84 16 8 F -0.18 -4.04 17.14 44.97 0.77 -3.27 16 9 F -0.18 -5.56 13.40 44.97 0.60 -4.96 16 10 C -0.11 -2.26 6.36 31.80 0.20 -2.06 16 11 C 0.03 0.86 5.01 86.65 0.43 1.29 16 12 N -0.51 -17.56 4.83 -834.14 -4.03 -21.59 16 13 C 0.10 3.69 3.04 86.30 0.26 3.96 16 14 C -0.02 -0.68 0.99 -52.93 -0.05 -0.74 16 15 C -0.46 -26.47 9.40 25.60 0.24 -26.23 16 16 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 17 C 0.02 0.99 5.46 84.66 0.46 1.46 16 18 N -0.96 -61.50 13.96 21.45 0.30 -61.20 16 19 Si 0.93 44.26 24.98 68.60 1.71 45.97 16 20 H -0.28 -12.76 7.05 99.48 0.70 -12.06 16 21 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 22 H -0.22 -9.20 5.78 99.48 0.57 -8.63 16 23 C -0.19 -7.38 8.09 30.60 0.25 -7.13 16 24 C -0.17 -6.14 8.73 30.60 0.27 -5.87 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 2.70 5.36 -2.39 -0.01 2.68 16 27 H 0.07 2.72 5.38 -2.38 -0.01 2.71 16 28 H 0.08 1.56 7.79 -2.39 -0.02 1.55 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.41 6.27 -2.38 -0.01 1.40 16 31 H 0.07 1.71 7.30 -2.39 -0.02 1.69 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.36 7.74 -2.38 -0.02 1.34 16 34 H 0.09 2.38 6.13 -2.39 -0.01 2.37 16 35 H 0.05 2.02 3.92 -2.39 -0.01 2.01 16 36 H 0.05 1.45 6.75 -2.39 -0.02 1.43 16 37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.10 3.14 8.08 -2.39 -0.02 3.12 16 39 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.11 3.26 5.83 -2.39 -0.01 3.24 16 Total: -1.00 -69.10 311.36 4.17 -64.93 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.90 Total: 17.42 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 3.26 Total: -33.47 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -3.73 Total: -82.79 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 2.01 Total: -12.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.71 Total: 45.97 kcal Total: -69.10 4.17 -64.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302497968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.335 kcal (2) G-P(sol) polarization free energy of solvation -69.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds