Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00339 * 2 1 4 4 C 1.52999 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46907 * 65.00466 * 4 3 2 6 6 C 1.37098 * 119.99904 * 89.99638 * 5 4 3 7 7 H 1.07993 * 119.99991 * 213.82116 * 6 5 4 8 8 C 1.38946 * 120.00005 * 33.82347 * 6 5 4 9 9 N 1.31415 * 120.00488 * 23.05953 * 8 6 5 10 10 Si 1.86805 * 120.00014 * 203.05833 * 8 6 5 11 11 H 1.48508 * 109.46805 * 89.99998 * 10 8 6 12 12 H 1.48495 * 109.47154 * 209.99696 * 10 8 6 13 13 H 1.48494 * 109.47354 * 330.00232 * 10 8 6 14 14 C 1.34771 * 119.99988 * 270.27277 * 5 4 3 15 15 O 1.21299 * 119.99967 * 4.50608 * 14 5 4 16 16 C 1.50702 * 120.00207 * 184.50636 * 14 5 4 17 17 C 1.50692 * 109.47297 * 174.58283 * 16 14 5 18 18 C 1.38257 * 120.00273 * 89.99975 * 17 16 14 19 19 C 1.38213 * 120.00618 * 179.97438 * 18 17 16 20 20 C 1.38257 * 119.99650 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.00130 * 180.02562 * 20 19 18 22 22 C 1.38216 * 120.00143 * 0.02562 * 20 19 18 23 23 C 1.50700 * 120.00064 * 180.02562 * 22 20 19 24 24 C 1.38212 * 120.00420 * 269.72622 * 17 16 14 25 25 H 1.08999 * 109.47090 * 59.99158 * 1 2 3 26 26 H 1.08997 * 109.46856 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46590 * 299.99537 * 1 2 3 28 28 H 1.08999 * 109.46471 * 60.00180 * 3 2 1 29 29 H 1.09002 * 109.47199 * 300.00960 * 3 2 1 30 30 H 1.08999 * 109.47442 * 305.00315 * 4 3 2 31 31 H 1.09001 * 109.46773 * 185.00265 * 4 3 2 32 32 H 0.96996 * 120.00116 * 180.47551 * 9 8 6 33 33 H 1.09004 * 109.46902 * 294.58569 * 16 14 5 34 34 H 1.09002 * 109.46969 * 54.58405 * 16 14 5 35 35 H 1.08007 * 119.99898 * 0.02562 * 18 17 16 36 36 H 1.08000 * 120.00086 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47277 * 89.99488 * 21 20 19 38 38 H 1.09000 * 109.47568 * 210.00378 * 21 20 19 39 39 H 1.08999 * 109.46999 * 330.00115 * 21 20 19 40 40 H 1.09002 * 109.46976 * 89.99816 * 23 22 20 41 41 H 1.08995 * 109.46986 * 209.99779 * 23 22 20 42 42 H 1.08999 * 109.46929 * 330.00118 * 23 22 20 43 43 H 1.08010 * 119.99515 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2663 1.3471 -2.3403 7 1 4.0601 0.9852 -3.3366 8 6 4.8263 2.6060 -2.1604 9 7 5.4863 2.8802 -1.0577 10 14 4.6409 3.9088 -3.4863 11 1 3.4061 4.6956 -3.2379 12 1 5.8181 4.8135 -3.4594 13 1 4.5508 3.2530 -4.8156 14 6 4.0895 -0.7758 -1.3375 15 8 3.7500 -1.4734 -0.4050 16 6 4.6386 -1.4078 -2.5905 17 6 4.7860 -2.8928 -2.3811 18 6 3.7390 -3.7417 -2.6889 19 6 3.8743 -5.1038 -2.4973 20 6 5.0569 -5.6175 -1.9984 21 6 5.2048 -7.1026 -1.7900 22 6 6.1037 -4.7689 -1.6907 23 6 7.3929 -5.3290 -1.1474 24 6 5.9698 -3.4069 -1.8867 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 3.8516 0.5681 0.8409 31 1 3.9786 2.1765 0.0890 32 1 5.8712 3.7612 -0.9292 33 1 3.9553 -1.2238 -3.4197 34 1 5.6123 -0.9747 -2.8192 35 1 2.8155 -3.3405 -3.0798 36 1 3.0565 -5.7668 -2.7382 37 1 5.6014 -7.5591 -2.6969 38 1 5.8885 -7.2871 -0.9614 39 1 4.2312 -7.5361 -1.5611 40 1 8.0646 -5.5620 -1.9737 41 1 7.8620 -4.5932 -0.4943 42 1 7.1847 -6.2369 -0.5813 43 1 6.7892 -2.7442 -1.6500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316608412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = -61.617016 kcal Electronic energy + Delta-G solvation = -23658.691028 eV Core-core repulsion = 20282.863153 eV Total energy + Delta-G solvation = -3375.827875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.40671 -38.29741 -36.82159 -34.74011 -33.56481 -31.86129 -31.54699 -29.88434 -28.44055 -26.84632 -25.75198 -24.99478 -24.45718 -21.84873 -21.58248 -19.78186 -18.88955 -16.86182 -15.98141 -15.58417 -15.47201 -15.32435 -15.20007 -14.50629 -14.36051 -14.25662 -14.00211 -13.83464 -13.36368 -12.74207 -12.64948 -12.60782 -12.37319 -12.22561 -11.85883 -11.67177 -11.64514 -11.45469 -11.17863 -11.09124 -11.00891 -10.75071 -10.49970 -10.43212 -10.40675 -10.26845 -10.13117 -9.12362 -8.92880 -8.36526 -8.22626 -7.85039 -7.47951 -6.38005 -4.02800 1.82429 1.87987 3.09942 3.20671 3.22226 4.03367 4.11957 4.18053 4.59643 4.88389 5.07412 5.11318 5.15675 5.32351 5.35482 5.53492 5.62979 5.70638 5.70878 5.76806 5.82095 5.95446 6.00114 6.01721 6.05698 6.07906 6.09945 6.16837 6.22089 6.37079 6.44019 6.49399 6.62170 6.67830 6.89411 6.96161 7.03057 7.22815 7.24662 7.45297 7.52924 7.93847 7.97203 8.42161 9.12266 9.62149 10.08872 10.63187 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.004813 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.114461 B = 5816.047590 C = 6829.483855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.049 3.951 4 C 0.116 3.884 5 N -0.444 5.444 6 C -0.333 4.333 7 H 0.089 0.911 8 C 0.040 3.960 9 N -0.861 5.861 10 Si 0.911 3.089 11 H -0.278 1.278 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.481 3.519 15 O -0.577 6.577 16 C -0.088 4.088 17 C -0.041 4.041 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.105 4.105 21 C -0.110 4.110 22 C -0.090 4.090 23 C -0.113 4.113 24 C -0.105 4.105 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.121 0.879 32 H 0.269 0.731 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -9.208 -2.324 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.029 4.029 4 C -0.008 4.008 5 N -0.164 5.164 6 C -0.461 4.461 7 H 0.106 0.894 8 C -0.165 4.165 9 N -0.498 5.498 10 Si 0.737 3.263 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.193 1.193 14 C 0.269 3.731 15 O -0.460 6.460 16 C -0.128 4.128 17 C -0.042 4.042 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.105 4.105 21 C -0.167 4.167 22 C -0.090 4.090 23 C -0.169 4.169 24 C -0.123 4.123 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.594 -9.551 -1.765 9.842 hybrid contribution -0.454 1.320 -0.696 1.560 sum -2.047 -8.230 -2.461 8.831 Atomic orbital electron populations 1.22615 0.83697 1.01538 0.98704 1.88207 1.17181 1.27821 1.95018 1.23113 0.96737 0.84402 0.98602 1.21512 0.89350 1.02143 0.87825 1.43309 1.58074 1.03739 1.11313 1.19453 1.40729 0.98577 0.87312 0.89360 1.25299 0.94221 0.99473 0.97532 1.69908 1.30269 1.22291 1.27373 0.86191 0.77894 0.80832 0.81361 1.20393 1.20995 1.19340 1.20109 0.81383 0.83051 0.88523 1.90579 1.52992 1.62098 1.40298 1.20486 1.03342 0.90481 0.98459 1.19573 0.93309 0.94923 0.96362 1.20912 0.98061 0.93044 1.00519 1.20842 0.96878 0.95132 1.00828 1.19579 0.94154 0.95293 1.01445 1.20773 1.02083 0.92240 1.01600 1.19612 0.95671 0.93347 1.00416 1.20804 0.94576 1.01063 1.00493 1.20856 0.97721 0.94222 0.99548 0.95089 0.90659 0.95264 0.94576 0.93616 0.92135 0.86173 0.92060 0.89741 0.88813 0.86662 0.86811 0.91826 0.91578 0.92131 0.91670 0.91771 0.91602 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.36 -8.10 9.27 -48.28 -0.45 -8.55 16 3 C 0.05 1.05 6.28 37.16 0.23 1.28 16 4 C 0.12 2.81 5.45 -4.04 -0.02 2.79 16 5 N -0.44 -11.23 2.53 -114.81 -0.29 -11.52 16 6 C -0.33 -8.29 8.61 -14.93 -0.13 -8.42 16 7 H 0.09 2.12 7.13 -52.49 -0.37 1.74 16 8 C 0.04 0.98 4.95 -17.47 -0.09 0.89 16 9 N -0.86 -22.13 11.30 55.50 0.63 -21.50 16 10 Si 0.91 19.00 29.61 -169.99 -5.03 13.97 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 14 C 0.48 11.98 7.29 -10.99 -0.08 11.90 16 15 O -0.58 -15.78 14.62 -7.51 -0.11 -15.89 16 16 C -0.09 -1.83 4.50 -29.04 -0.13 -1.96 16 17 C -0.04 -0.80 4.38 -104.63 -0.46 -1.26 16 18 C -0.11 -1.93 9.70 -39.58 -0.38 -2.31 16 19 C -0.12 -1.88 9.70 -39.58 -0.38 -2.27 16 20 C -0.10 -1.59 5.88 -104.63 -0.62 -2.20 16 21 C -0.11 -1.25 9.60 36.00 0.35 -0.91 16 22 C -0.09 -1.45 5.88 -104.62 -0.62 -2.06 16 23 C -0.11 -1.41 9.60 36.01 0.35 -1.06 16 24 C -0.11 -1.93 9.36 -39.58 -0.37 -2.30 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.55 7.50 -51.93 -0.39 1.16 16 31 H 0.12 3.01 5.31 -51.93 -0.28 2.73 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.08 1.64 7.73 -51.93 -0.40 1.24 16 34 H 0.09 1.92 7.96 -51.93 -0.41 1.51 16 35 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.68 5.95 -51.93 -0.31 0.38 16 39 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.07 0.72 5.95 -51.93 -0.31 0.41 16 43 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -30.31 354.04 -7.83 -38.14 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.67 Total: 6.26 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.24 Total: -6.24 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.34 Total: -33.02 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.56 Total: -24.44 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.31 -7.83 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316608412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.479 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds