Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00339 * 2 1 4 4 C 1.52999 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46907 * 65.00466 * 4 3 2 6 6 C 1.37098 * 119.99904 * 89.99638 * 5 4 3 7 7 H 1.07993 * 119.99991 * 213.82116 * 6 5 4 8 8 C 1.38946 * 120.00005 * 33.82347 * 6 5 4 9 9 N 1.31415 * 120.00488 * 23.05953 * 8 6 5 10 10 Si 1.86805 * 120.00014 * 203.05833 * 8 6 5 11 11 H 1.48508 * 109.46805 * 89.99998 * 10 8 6 12 12 H 1.48495 * 109.47154 * 209.99696 * 10 8 6 13 13 H 1.48494 * 109.47354 * 330.00232 * 10 8 6 14 14 C 1.34771 * 119.99988 * 270.27277 * 5 4 3 15 15 O 1.21299 * 119.99967 * 4.50608 * 14 5 4 16 16 C 1.50702 * 120.00207 * 184.50636 * 14 5 4 17 17 C 1.50692 * 109.47297 * 174.58283 * 16 14 5 18 18 C 1.38257 * 120.00273 * 89.99975 * 17 16 14 19 19 C 1.38213 * 120.00618 * 179.97438 * 18 17 16 20 20 C 1.38257 * 119.99650 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.00130 * 180.02562 * 20 19 18 22 22 C 1.38216 * 120.00143 * 0.02562 * 20 19 18 23 23 C 1.50700 * 120.00064 * 180.02562 * 22 20 19 24 24 C 1.38212 * 120.00420 * 269.72622 * 17 16 14 25 25 H 1.08999 * 109.47090 * 59.99158 * 1 2 3 26 26 H 1.08997 * 109.46856 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46590 * 299.99537 * 1 2 3 28 28 H 1.08999 * 109.46471 * 60.00180 * 3 2 1 29 29 H 1.09002 * 109.47199 * 300.00960 * 3 2 1 30 30 H 1.08999 * 109.47442 * 305.00315 * 4 3 2 31 31 H 1.09001 * 109.46773 * 185.00265 * 4 3 2 32 32 H 0.96996 * 120.00116 * 180.47551 * 9 8 6 33 33 H 1.09004 * 109.46902 * 294.58569 * 16 14 5 34 34 H 1.09002 * 109.46969 * 54.58405 * 16 14 5 35 35 H 1.08007 * 119.99898 * 0.02562 * 18 17 16 36 36 H 1.08000 * 120.00086 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47277 * 89.99488 * 21 20 19 38 38 H 1.09000 * 109.47568 * 210.00378 * 21 20 19 39 39 H 1.08999 * 109.46999 * 330.00115 * 21 20 19 40 40 H 1.09002 * 109.46976 * 89.99816 * 23 22 20 41 41 H 1.08995 * 109.46986 * 209.99779 * 23 22 20 42 42 H 1.08999 * 109.46929 * 330.00118 * 23 22 20 43 43 H 1.08010 * 119.99515 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2663 1.3471 -2.3403 7 1 4.0601 0.9852 -3.3366 8 6 4.8263 2.6060 -2.1604 9 7 5.4863 2.8802 -1.0577 10 14 4.6409 3.9088 -3.4863 11 1 3.4061 4.6956 -3.2379 12 1 5.8181 4.8135 -3.4594 13 1 4.5508 3.2530 -4.8156 14 6 4.0895 -0.7758 -1.3375 15 8 3.7500 -1.4734 -0.4050 16 6 4.6386 -1.4078 -2.5905 17 6 4.7860 -2.8928 -2.3811 18 6 3.7390 -3.7417 -2.6889 19 6 3.8743 -5.1038 -2.4973 20 6 5.0569 -5.6175 -1.9984 21 6 5.2048 -7.1026 -1.7900 22 6 6.1037 -4.7689 -1.6907 23 6 7.3929 -5.3290 -1.1474 24 6 5.9698 -3.4069 -1.8867 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 3.8516 0.5681 0.8409 31 1 3.9786 2.1765 0.0890 32 1 5.8712 3.7612 -0.9292 33 1 3.9553 -1.2238 -3.4197 34 1 5.6123 -0.9747 -2.8192 35 1 2.8155 -3.3405 -3.0798 36 1 3.0565 -5.7668 -2.7382 37 1 5.6014 -7.5591 -2.6969 38 1 5.8885 -7.2871 -0.9614 39 1 4.2312 -7.5361 -1.5611 40 1 8.0646 -5.5620 -1.9737 41 1 7.8620 -4.5932 -0.4943 42 1 7.1847 -6.2369 -0.5813 43 1 6.7892 -2.7442 -1.6500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316608412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = -77.160932 kcal Electronic energy + Delta-G solvation = -23659.365063 eV Core-core repulsion = 20282.863153 eV Total energy + Delta-G solvation = -3376.501910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89171 -39.97042 -38.48147 -36.61836 -34.94542 -33.48439 -33.07445 -31.50413 -29.89451 -28.03301 -27.21949 -26.77018 -25.89510 -23.50560 -22.91262 -21.28693 -20.65238 -18.67415 -17.83511 -17.21483 -17.03282 -16.70754 -16.66047 -16.11351 -16.04729 -15.76488 -15.39727 -15.09272 -14.96271 -14.39293 -13.96227 -13.70134 -13.57681 -13.53292 -13.32770 -13.29575 -13.24480 -12.75948 -12.67654 -12.64647 -12.46617 -12.37146 -12.23062 -12.02107 -11.91192 -11.73784 -11.62807 -11.01682 -10.53664 -10.22503 -9.55594 -9.44073 -9.19392 -8.28009 -5.99870 0.51521 0.56930 1.43626 1.49852 1.59862 2.16242 2.33818 2.78595 2.99664 3.08798 3.30205 3.91145 3.95533 4.10004 4.19272 4.26164 4.33486 4.36301 4.44990 4.51634 4.54639 4.57767 4.62013 4.71431 4.76737 4.77933 4.80370 4.82464 4.90128 4.94600 5.03780 5.08880 5.12354 5.29039 5.33679 5.44482 5.52494 5.61823 5.79860 5.84844 6.03995 6.25368 6.38811 6.50860 7.18709 7.68518 8.16076 8.74267 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015577 B = 0.004813 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.114461 B = 5816.047590 C = 6829.483855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.060 3.940 4 C 0.114 3.886 5 N -0.452 5.452 6 C -0.350 4.350 7 H 0.094 0.906 8 C 0.004 3.996 9 N -0.892 5.892 10 Si 0.979 3.021 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.260 1.260 14 C 0.468 3.532 15 O -0.609 6.609 16 C -0.075 4.075 17 C -0.069 4.069 18 C -0.125 4.125 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.097 4.097 23 C -0.111 4.111 24 C -0.129 4.129 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.111 0.889 32 H 0.273 0.727 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 -10.425 -3.242 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.018 4.018 4 C -0.010 4.010 5 N -0.172 5.172 6 C -0.478 4.478 7 H 0.112 0.888 8 C -0.199 4.199 9 N -0.529 5.529 10 Si 0.803 3.197 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.184 1.184 14 C 0.257 3.743 15 O -0.494 6.494 16 C -0.115 4.115 17 C -0.069 4.069 18 C -0.143 4.143 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.164 4.164 22 C -0.097 4.097 23 C -0.167 4.167 24 C -0.147 4.147 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.173 -10.764 -2.690 11.306 hybrid contribution -0.273 1.634 -0.352 1.694 sum -2.446 -9.130 -3.042 9.930 Atomic orbital electron populations 1.22846 0.80892 1.02924 1.00341 1.88148 1.20339 1.28129 1.95327 1.22913 0.94547 0.84603 0.99724 1.21456 0.91775 1.00811 0.86926 1.43553 1.57894 1.04133 1.11613 1.19731 1.41441 0.99129 0.87482 0.88799 1.26103 0.93294 1.00870 0.99589 1.70002 1.30829 1.22893 1.29219 0.85137 0.77691 0.77911 0.78935 1.19862 1.20987 1.18417 1.20775 0.81023 0.82970 0.89489 1.90529 1.54451 1.62721 1.41715 1.20345 1.02733 0.91713 0.96710 1.19566 0.94668 0.94071 0.98629 1.21058 0.97748 0.94201 1.01300 1.21214 0.98155 0.94528 0.99999 1.20103 0.93264 0.97533 0.99612 1.20852 1.03395 0.89153 1.03030 1.20036 0.97533 0.92494 0.99673 1.20868 0.93095 1.01548 1.01197 1.20977 0.97363 0.95670 1.00676 0.93944 0.89503 0.92989 0.91916 0.93754 0.94659 0.87120 0.91744 0.88883 0.89364 0.86582 0.83964 0.89861 0.90355 0.90853 0.89774 0.92288 0.89520 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.40 -17.89 9.27 -136.50 -1.27 -19.16 16 3 C 0.06 2.56 6.28 71.98 0.45 3.01 16 4 C 0.11 5.75 5.45 86.38 0.47 6.22 16 5 N -0.45 -23.64 2.53 -635.54 -1.61 -25.24 16 6 C -0.35 -17.75 8.61 84.04 0.72 -17.02 16 7 H 0.09 4.55 7.13 -2.91 -0.02 4.53 16 8 C 0.00 0.21 4.95 84.93 0.42 0.63 16 9 N -0.89 -46.58 11.30 21.66 0.24 -46.33 16 10 Si 0.98 38.67 29.61 68.60 2.03 40.70 16 11 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 12 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 14 C 0.47 24.28 7.29 87.66 0.64 24.92 16 15 O -0.61 -34.75 14.62 9.39 0.14 -34.61 16 16 C -0.08 -3.28 4.50 29.10 0.13 -3.15 16 17 C -0.07 -2.77 4.38 -19.87 -0.09 -2.86 16 18 C -0.12 -4.53 9.70 22.27 0.22 -4.31 16 19 C -0.12 -3.67 9.70 22.27 0.22 -3.45 16 20 C -0.11 -2.97 5.88 -19.87 -0.12 -3.09 16 21 C -0.11 -2.05 9.60 71.23 0.68 -1.36 16 22 C -0.10 -3.03 5.88 -19.86 -0.12 -3.15 16 23 C -0.11 -2.56 9.60 71.24 0.68 -1.87 16 24 C -0.13 -4.85 9.36 22.27 0.21 -4.64 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.03 1.90 7.50 -2.39 -0.02 1.88 16 31 H 0.11 5.74 5.31 -2.39 -0.01 5.73 16 32 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 33 H 0.09 3.76 7.73 -2.38 -0.02 3.74 16 34 H 0.09 3.83 7.96 -2.39 -0.02 3.81 16 35 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.31 5.95 -2.39 -0.01 1.30 16 39 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 42 H 0.09 1.63 5.95 -2.39 -0.01 1.61 16 43 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -66.95 354.04 6.30 -60.65 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.99 Total: 32.03 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.77 Total: -8.03 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.36 Total: -71.58 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -1.13 Total: -53.77 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -66.95 6.30 -60.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316608412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.507 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds