Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00154 * 2 1 4 4 C 1.53000 * 109.47600 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46744 * 64.99629 * 4 3 2 6 6 C 1.37095 * 120.00498 * 270.00113 * 5 4 3 7 7 H 1.08001 * 120.00233 * 144.60610 * 6 5 4 8 8 C 1.38955 * 120.00000 * 324.61232 * 6 5 4 9 9 N 1.31411 * 119.99830 * 338.15577 * 8 6 5 10 10 Si 1.86797 * 120.00073 * 158.15445 * 8 6 5 11 11 H 1.48492 * 109.47292 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46966 * 119.99875 * 10 8 6 13 13 H 1.48498 * 109.47139 * 239.99580 * 10 8 6 14 14 C 1.34778 * 119.99891 * 90.00463 * 5 4 3 15 15 O 1.21297 * 119.99781 * 5.02588 * 14 5 4 16 16 C 1.50703 * 120.00200 * 185.01918 * 14 5 4 17 17 C 1.50699 * 109.46868 * 182.33907 * 16 14 5 18 18 C 1.38264 * 120.00076 * 265.00096 * 17 16 14 19 19 C 1.38215 * 119.99896 * 179.97438 * 18 17 16 20 20 C 1.50690 * 119.99831 * 180.02562 * 19 18 17 21 21 C 1.38259 * 119.99881 * 359.97438 * 19 18 17 22 22 C 1.38216 * 120.00109 * 0.27769 * 21 19 18 23 23 C 1.38206 * 119.99970 * 85.02969 * 17 16 14 24 24 C 1.50702 * 120.00126 * 359.97438 * 23 17 16 25 25 H 1.09006 * 109.47271 * 60.00593 * 1 2 3 26 26 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47626 * 300.00226 * 1 2 3 28 28 H 1.09003 * 109.47135 * 59.99389 * 3 2 1 29 29 H 1.08998 * 109.47061 * 299.99791 * 3 2 1 30 30 H 1.09005 * 109.46713 * 305.00319 * 4 3 2 31 31 H 1.08998 * 109.47157 * 184.99843 * 4 3 2 32 32 H 0.96997 * 120.00456 * 180.64425 * 9 8 6 33 33 H 1.08999 * 109.46669 * 62.34422 * 16 14 5 34 34 H 1.08995 * 109.47068 * 302.34322 * 16 14 5 35 35 H 1.08001 * 119.99955 * 0.02562 * 18 17 16 36 36 H 1.08999 * 109.47338 * 269.97573 * 20 19 18 37 37 H 1.08999 * 109.47520 * 29.98275 * 20 19 18 38 38 H 1.09007 * 109.47229 * 149.97712 * 20 19 18 39 39 H 1.07993 * 119.99807 * 180.02562 * 21 19 18 40 40 H 1.07997 * 119.99893 * 179.72694 * 22 21 19 41 41 H 1.09000 * 109.47256 * 89.99939 * 24 23 17 42 42 H 1.08992 * 109.47440 * 210.00046 * 24 23 17 43 43 H 1.09004 * 109.47046 * 330.00375 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0979 -0.7991 -1.3345 7 1 3.8568 -1.3071 -2.2566 8 6 4.5311 -1.5270 -0.2330 9 7 5.2190 -0.9343 0.7169 10 14 4.1354 -3.3479 -0.1025 11 1 3.3559 -3.7717 -1.2933 12 1 5.3988 -4.1255 -0.0362 13 1 3.3375 -3.5943 1.1254 14 6 4.2633 1.3329 -2.3200 15 8 4.2444 2.5416 -2.2202 16 6 4.6074 0.6909 -3.6393 17 6 4.9397 1.7610 -4.6470 18 6 3.9624 2.2296 -5.5055 19 6 4.2671 3.2115 -6.4294 20 6 3.2018 3.7226 -7.3646 21 6 5.5489 3.7254 -6.4947 22 6 6.5272 3.2532 -5.6400 23 6 6.2215 2.2736 -4.7135 24 6 7.2867 1.7628 -3.7778 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1766 0.0902 32 1 5.5294 -1.4444 1.4813 33 1 3.7559 0.1100 -3.9937 34 1 5.4673 0.0337 -3.5103 35 1 2.9608 1.8291 -5.4536 36 1 3.1993 3.1231 -8.2749 37 1 2.2281 3.6514 -6.8800 38 1 3.4074 4.7633 -7.6156 39 1 5.7869 4.4928 -7.2163 40 1 7.5296 3.6515 -5.6941 41 1 7.7975 0.9160 -4.2363 42 1 8.0065 2.5567 -3.5786 43 1 6.8267 1.4461 -2.8418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316915747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = -62.277289 kcal Electronic energy + Delta-G solvation = -23917.871560 eV Core-core repulsion = 20542.015054 eV Total energy + Delta-G solvation = -3375.856507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.53283 -38.28197 -36.89877 -34.67211 -33.70267 -31.82653 -31.52303 -29.42474 -28.92574 -27.01111 -25.74358 -24.61955 -24.36373 -22.29769 -21.41568 -19.83126 -18.87307 -16.80126 -16.16864 -15.60794 -15.45444 -15.28766 -15.25431 -14.49809 -14.41109 -14.20759 -13.96633 -13.59363 -13.33400 -12.96579 -12.68834 -12.48247 -12.30481 -12.25547 -11.95961 -11.68005 -11.52445 -11.19978 -11.18410 -11.07550 -10.97966 -10.89401 -10.60714 -10.46462 -10.36445 -10.28843 -9.98848 -9.11913 -8.95238 -8.53765 -8.21042 -7.89598 -7.44594 -6.28616 -3.93837 1.78459 1.84632 3.18916 3.30270 3.33823 3.93064 4.09632 4.23381 4.53882 4.86751 5.11680 5.14357 5.18959 5.35541 5.41302 5.51873 5.67425 5.72022 5.73056 5.81878 5.87432 5.94870 5.97642 6.01381 6.07363 6.08634 6.11759 6.18906 6.35413 6.35827 6.37790 6.44480 6.62649 6.72380 6.80434 6.88396 6.96642 7.21509 7.32712 7.47422 7.55227 7.85065 8.04484 8.43226 9.17850 9.58166 9.99792 10.73798 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.005068 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.015214 B = 5523.839202 C = 6281.524218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.431 5.431 6 C -0.323 4.323 7 H 0.087 0.913 8 C 0.051 3.949 9 N -0.863 5.863 10 Si 0.914 3.086 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.280 1.280 14 C 0.473 3.527 15 O -0.601 6.601 16 C -0.088 4.088 17 C -0.040 4.040 18 C -0.108 4.108 19 C -0.099 4.099 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.073 4.073 24 C -0.116 4.116 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.267 0.733 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 3.392 -8.359 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.015 4.015 5 N -0.150 5.150 6 C -0.451 4.451 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.500 5.500 10 Si 0.741 3.259 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.206 1.206 14 C 0.262 3.738 15 O -0.488 6.488 16 C -0.128 4.128 17 C -0.041 4.041 18 C -0.126 4.126 19 C -0.099 4.099 20 C -0.165 4.165 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.073 4.073 24 C -0.173 4.173 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.464 3.753 -8.092 9.254 hybrid contribution -0.564 -0.730 0.270 0.961 sum -3.028 3.023 -7.822 8.916 Atomic orbital electron populations 1.22645 0.83609 1.01687 0.98761 1.88158 1.17185 1.27646 1.94992 1.23026 0.96642 0.84299 0.98339 1.21504 0.89149 0.99211 0.91646 1.43327 1.56324 1.06247 1.09056 1.19292 1.44602 0.80710 1.00459 0.89573 1.25186 0.94109 0.99724 0.96402 1.69884 1.31696 1.37295 1.11169 0.86100 0.78047 0.83083 0.78669 1.19348 1.21222 1.20595 1.20184 0.80489 0.86753 0.86333 1.90545 1.57987 1.14555 1.85667 1.20483 1.03405 0.96387 0.92510 1.19467 0.92769 0.96743 0.95092 1.20820 0.98611 0.97357 0.95795 1.19740 0.94933 0.97448 0.97816 1.20716 0.97183 1.00559 0.98042 1.20819 0.93011 1.00809 1.00149 1.20889 0.98883 0.97711 0.96380 1.19714 0.94744 0.96430 0.96423 1.20817 0.96769 1.00551 0.99142 0.95060 0.90469 0.95226 0.94399 0.94498 0.86539 0.91096 0.92265 0.89732 0.88349 0.86702 0.91742 0.91876 0.92044 0.86894 0.86681 0.91608 0.92163 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.76 10.18 -35.23 -0.36 -8.12 16 3 C 0.05 1.15 6.28 37.16 0.23 1.38 16 4 C 0.11 2.62 5.47 -4.04 -0.02 2.59 16 5 N -0.43 -10.77 2.52 -114.81 -0.29 -11.06 16 6 C -0.32 -8.14 8.14 -14.93 -0.12 -8.26 16 7 H 0.09 2.10 7.10 -52.49 -0.37 1.73 16 8 C 0.05 1.29 4.97 -17.47 -0.09 1.20 16 9 N -0.86 -22.76 11.34 55.50 0.63 -22.13 16 10 Si 0.91 20.02 29.61 -169.99 -5.03 14.99 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.47 11.43 6.84 -10.98 -0.08 11.36 16 15 O -0.60 -15.87 15.59 5.54 0.09 -15.78 16 16 C -0.09 -1.80 3.74 -29.03 -0.11 -1.91 16 17 C -0.04 -0.77 4.37 -104.62 -0.46 -1.23 16 18 C -0.11 -1.88 9.34 -39.58 -0.37 -2.25 16 19 C -0.10 -1.53 5.88 -104.63 -0.62 -2.14 16 20 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 21 C -0.13 -1.93 9.70 -39.58 -0.38 -2.31 16 22 C -0.12 -1.91 9.70 -39.58 -0.38 -2.29 16 23 C -0.07 -1.32 5.88 -104.62 -0.62 -1.93 16 24 C -0.12 -1.98 9.22 36.01 0.33 -1.65 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.12 3.01 5.38 -51.93 -0.28 2.73 16 31 H 0.07 1.72 7.36 -51.93 -0.38 1.34 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.08 1.62 7.81 -51.93 -0.41 1.21 16 34 H 0.10 1.97 6.81 -51.93 -0.35 1.62 16 35 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 43 H 0.08 1.56 6.16 -51.93 -0.32 1.24 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -30.06 355.45 -7.55 -37.61 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.74 Total: 5.88 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.20 Total: -6.74 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.34 Total: -33.19 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.27 Total: -23.90 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.06 -7.55 -37.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316915747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.671 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds