Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00154 * 2 1 4 4 C 1.53000 * 109.47600 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46744 * 64.99629 * 4 3 2 6 6 C 1.37095 * 120.00498 * 270.00113 * 5 4 3 7 7 H 1.08001 * 120.00233 * 144.60610 * 6 5 4 8 8 C 1.38955 * 120.00000 * 324.61232 * 6 5 4 9 9 N 1.31411 * 119.99830 * 338.15577 * 8 6 5 10 10 Si 1.86797 * 120.00073 * 158.15445 * 8 6 5 11 11 H 1.48492 * 109.47292 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46966 * 119.99875 * 10 8 6 13 13 H 1.48498 * 109.47139 * 239.99580 * 10 8 6 14 14 C 1.34778 * 119.99891 * 90.00463 * 5 4 3 15 15 O 1.21297 * 119.99781 * 5.02588 * 14 5 4 16 16 C 1.50703 * 120.00200 * 185.01918 * 14 5 4 17 17 C 1.50699 * 109.46868 * 182.33907 * 16 14 5 18 18 C 1.38264 * 120.00076 * 265.00096 * 17 16 14 19 19 C 1.38215 * 119.99896 * 179.97438 * 18 17 16 20 20 C 1.50690 * 119.99831 * 180.02562 * 19 18 17 21 21 C 1.38259 * 119.99881 * 359.97438 * 19 18 17 22 22 C 1.38216 * 120.00109 * 0.27769 * 21 19 18 23 23 C 1.38206 * 119.99970 * 85.02969 * 17 16 14 24 24 C 1.50702 * 120.00126 * 359.97438 * 23 17 16 25 25 H 1.09006 * 109.47271 * 60.00593 * 1 2 3 26 26 H 1.09003 * 109.46924 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47626 * 300.00226 * 1 2 3 28 28 H 1.09003 * 109.47135 * 59.99389 * 3 2 1 29 29 H 1.08998 * 109.47061 * 299.99791 * 3 2 1 30 30 H 1.09005 * 109.46713 * 305.00319 * 4 3 2 31 31 H 1.08998 * 109.47157 * 184.99843 * 4 3 2 32 32 H 0.96997 * 120.00456 * 180.64425 * 9 8 6 33 33 H 1.08999 * 109.46669 * 62.34422 * 16 14 5 34 34 H 1.08995 * 109.47068 * 302.34322 * 16 14 5 35 35 H 1.08001 * 119.99955 * 0.02562 * 18 17 16 36 36 H 1.08999 * 109.47338 * 269.97573 * 20 19 18 37 37 H 1.08999 * 109.47520 * 29.98275 * 20 19 18 38 38 H 1.09007 * 109.47229 * 149.97712 * 20 19 18 39 39 H 1.07993 * 119.99807 * 180.02562 * 21 19 18 40 40 H 1.07997 * 119.99893 * 179.72694 * 22 21 19 41 41 H 1.09000 * 109.47256 * 89.99939 * 24 23 17 42 42 H 1.08992 * 109.47440 * 210.00046 * 24 23 17 43 43 H 1.09004 * 109.47046 * 330.00375 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0979 -0.7991 -1.3345 7 1 3.8568 -1.3071 -2.2566 8 6 4.5311 -1.5270 -0.2330 9 7 5.2190 -0.9343 0.7169 10 14 4.1354 -3.3479 -0.1025 11 1 3.3559 -3.7717 -1.2933 12 1 5.3988 -4.1255 -0.0362 13 1 3.3375 -3.5943 1.1254 14 6 4.2633 1.3329 -2.3200 15 8 4.2444 2.5416 -2.2202 16 6 4.6074 0.6909 -3.6393 17 6 4.9397 1.7610 -4.6470 18 6 3.9624 2.2296 -5.5055 19 6 4.2671 3.2115 -6.4294 20 6 3.2018 3.7226 -7.3646 21 6 5.5489 3.7254 -6.4947 22 6 6.5272 3.2532 -5.6400 23 6 6.2215 2.2736 -4.7135 24 6 7.2867 1.7628 -3.7778 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1766 0.0902 32 1 5.5294 -1.4444 1.4813 33 1 3.7559 0.1100 -3.9937 34 1 5.4673 0.0337 -3.5103 35 1 2.9608 1.8291 -5.4536 36 1 3.1993 3.1231 -8.2749 37 1 2.2281 3.6514 -6.8800 38 1 3.4074 4.7633 -7.6156 39 1 5.7869 4.4928 -7.2163 40 1 7.5296 3.6515 -5.6941 41 1 7.7975 0.9160 -4.2363 42 1 8.0065 2.5567 -3.5786 43 1 6.8267 1.4461 -2.8418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316915747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -78.345020 kcal Electronic energy + Delta-G solvation = -23918.568309 eV Core-core repulsion = 20542.015054 eV Total energy + Delta-G solvation = -3376.553256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04362 -39.90789 -38.51510 -36.55264 -34.99832 -33.47366 -33.22547 -31.10835 -30.08123 -28.49810 -27.26158 -26.43067 -25.58200 -23.90101 -22.83130 -21.31919 -20.63132 -18.61204 -17.95886 -17.20374 -16.98166 -16.77209 -16.63060 -16.15138 -16.09704 -15.71346 -15.48601 -14.97029 -14.85581 -14.30281 -14.00159 -13.87767 -13.64565 -13.58461 -13.50548 -13.31096 -12.94401 -12.90159 -12.73736 -12.58180 -12.52180 -12.44677 -12.26210 -12.02792 -11.81865 -11.74766 -11.64675 -11.01878 -10.53611 -10.35780 -9.58886 -9.40328 -9.17313 -8.22277 -5.92975 0.51986 0.56738 1.43257 1.51231 1.61830 2.05451 2.37980 2.77940 3.00439 3.09773 3.29479 3.88901 3.96593 4.10352 4.19526 4.23604 4.28436 4.39100 4.45594 4.50674 4.53183 4.60691 4.62512 4.67399 4.75379 4.78054 4.81003 4.82277 4.88011 4.89446 4.94152 4.96493 5.16572 5.31997 5.38069 5.44130 5.56947 5.61916 5.75451 5.87973 6.04516 6.24623 6.41641 6.47830 7.22063 7.66109 8.07542 8.80967 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.005068 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.015214 B = 5523.839202 C = 6281.524218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.067 3.933 4 C 0.106 3.894 5 N -0.441 5.441 6 C -0.332 4.332 7 H 0.091 0.909 8 C 0.013 3.987 9 N -0.894 5.894 10 Si 0.975 3.025 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.283 1.283 14 C 0.466 3.534 15 O -0.630 6.630 16 C -0.076 4.076 17 C -0.068 4.068 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.106 4.106 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.110 4.110 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.269 0.731 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 3.541 -10.123 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.010 4.010 4 C -0.018 4.018 5 N -0.159 5.159 6 C -0.460 4.460 7 H 0.108 0.892 8 C -0.190 4.190 9 N -0.532 5.532 10 Si 0.800 3.200 11 H -0.184 1.184 12 H -0.207 1.207 13 H -0.209 1.209 14 C 0.256 3.744 15 O -0.518 6.518 16 C -0.115 4.115 17 C -0.069 4.069 18 C -0.145 4.145 19 C -0.102 4.102 20 C -0.163 4.163 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.097 4.097 24 C -0.167 4.167 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.156 3.894 -9.863 11.063 hybrid contribution -0.364 -0.702 0.796 1.123 sum -3.520 3.192 -9.067 10.236 Atomic orbital electron populations 1.22893 0.80782 1.03330 1.00216 1.88085 1.20307 1.27589 1.95264 1.22779 0.94434 0.84671 0.99155 1.21442 0.91548 0.97811 0.90994 1.43541 1.56439 1.06488 1.09450 1.19510 1.44655 0.80922 1.00888 0.89152 1.25920 0.93671 1.03421 0.95943 1.69982 1.32643 1.38834 1.11766 0.85163 0.77835 0.78454 0.78562 1.18436 1.20746 1.20865 1.20805 0.79646 0.86525 0.87395 1.90498 1.59154 1.15792 1.86327 1.20342 1.03280 0.96830 0.91066 1.19493 0.94050 0.97542 0.95783 1.21003 0.98458 0.98450 0.96541 1.20187 0.96317 0.96260 0.97391 1.20777 0.95862 1.01819 0.97808 1.21273 0.92409 1.00837 1.00060 1.21227 1.00536 0.96701 0.95631 1.19924 0.94543 0.97647 0.97613 1.20745 0.96859 1.01694 0.97359 0.94181 0.88806 0.93103 0.91754 0.95281 0.88349 0.92590 0.92148 0.89058 0.88795 0.86522 0.89888 0.91886 0.90172 0.83402 0.84093 0.89901 0.90709 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -16.69 10.18 -148.98 -1.52 -18.21 16 3 C 0.07 2.85 6.28 71.98 0.45 3.30 16 4 C 0.11 5.28 5.47 86.38 0.47 5.75 16 5 N -0.44 -22.78 2.52 -635.52 -1.60 -24.38 16 6 C -0.33 -17.07 8.14 84.04 0.68 -16.38 16 7 H 0.09 4.46 7.10 -2.91 -0.02 4.44 16 8 C 0.01 0.66 4.97 84.93 0.42 1.08 16 9 N -0.89 -48.28 11.34 21.66 0.25 -48.03 16 10 Si 0.97 41.08 29.61 68.60 2.03 43.11 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 14 C 0.47 23.37 6.84 87.66 0.60 23.97 16 15 O -0.63 -34.51 15.59 -3.08 -0.05 -34.56 16 16 C -0.08 -3.19 3.74 29.10 0.11 -3.08 16 17 C -0.07 -2.64 4.37 -19.87 -0.09 -2.73 16 18 C -0.13 -4.37 9.34 22.27 0.21 -4.16 16 19 C -0.10 -2.91 5.88 -19.87 -0.12 -3.03 16 20 C -0.11 -2.17 10.01 71.23 0.71 -1.46 16 21 C -0.13 -3.44 9.70 22.27 0.22 -3.22 16 22 C -0.12 -3.66 9.70 22.27 0.22 -3.44 16 23 C -0.10 -3.49 5.88 -19.87 -0.12 -3.60 16 24 C -0.11 -3.80 9.22 71.24 0.66 -3.15 16 25 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 5.28 5.38 -2.38 -0.01 5.27 16 31 H 0.06 2.87 7.36 -2.39 -0.02 2.85 16 32 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.09 3.60 7.81 -2.39 -0.02 3.58 16 34 H 0.09 3.95 6.81 -2.39 -0.02 3.93 16 35 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 38 H 0.08 1.35 8.09 -2.38 -0.02 1.33 16 39 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 43 H 0.04 1.62 6.16 -2.39 -0.01 1.60 16 Total: -1.00 -66.15 355.45 5.78 -60.38 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.99 Total: 29.85 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.68 Total: -8.16 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.35 Total: -72.41 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -1.56 Total: -52.77 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -66.15 5.78 -60.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316915747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.968 kcal (2) G-P(sol) polarization free energy of solvation -66.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds