Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35135 * 125.61322 * 2 1 4 4 C 1.40363 * 107.11038 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.64315 * 180.02562 * 4 3 2 6 6 C 1.36539 * 106.71213 * 359.97438 * 4 3 2 7 7 C 1.46660 * 125.99011 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00013 * 352.56457 * 7 6 4 9 9 N 1.34778 * 120.00039 * 172.56346 * 7 6 4 10 10 C 1.46930 * 120.63104 * 3.47272 * 9 7 6 11 11 C 1.52757 * 109.01134 * 233.58812 * 10 9 7 12 12 C 1.53040 * 109.38295 * 305.58948 * 11 10 9 13 13 C 1.52997 * 109.45198 * 181.25367 * 12 11 10 14 14 C 1.50702 * 109.47119 * 64.93837 * 13 12 11 15 15 H 1.08005 * 119.99942 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00293 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46851 * 90.00134 * 18 16 14 20 20 H 1.48494 * 109.47449 * 210.00608 * 18 16 14 21 21 H 1.48502 * 109.46713 * 330.00844 * 18 16 14 22 22 C 1.53042 * 109.53784 * 61.23865 * 12 11 10 23 23 C 1.46920 * 120.63217 * 183.76014 * 9 7 6 24 24 O 1.33927 * 125.61833 * 180.26552 * 2 1 3 25 25 H 1.09003 * 109.47049 * 89.99838 * 1 2 3 26 26 H 1.08993 * 109.47580 * 210.00044 * 1 2 3 27 27 H 1.09001 * 109.47302 * 330.00523 * 1 2 3 28 28 H 1.08004 * 126.44629 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46832 * 269.95420 * 5 4 3 30 30 H 1.08995 * 109.47118 * 29.95198 * 5 4 3 31 31 H 1.08998 * 109.46994 * 149.96035 * 5 4 3 32 32 H 1.09003 * 109.58329 * 353.42157 * 10 9 7 33 33 H 1.08996 * 109.58640 * 113.84516 * 10 9 7 34 34 H 1.08994 * 109.56903 * 185.55349 * 11 10 9 35 35 H 1.09002 * 109.35844 * 65.49639 * 11 10 9 36 36 H 1.09005 * 109.45996 * 301.21865 * 12 11 10 37 37 H 1.09003 * 109.47215 * 184.93802 * 13 12 11 38 38 H 1.09003 * 109.47141 * 304.93357 * 13 12 11 39 39 H 0.96996 * 120.00288 * 179.97438 * 17 16 14 40 40 H 1.09006 * 109.49801 * 178.68617 * 22 12 11 41 41 H 1.08995 * 109.52685 * 58.60607 * 22 12 11 42 42 H 1.09008 * 109.58353 * 246.15591 * 23 9 7 43 43 H 1.09001 * 109.58855 * 6.43217 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0006 5 6 4.8617 1.5144 0.0014 6 6 3.5823 -0.7116 0.0015 7 6 4.7415 -1.6101 0.0019 8 8 5.8626 -1.1570 -0.1351 9 7 4.5650 -2.9376 0.1539 10 6 3.2139 -3.5077 0.2442 11 6 3.1154 -4.3560 1.5108 12 6 4.2383 -5.3958 1.5144 13 6 4.1224 -6.2665 2.7670 14 6 2.8424 -7.0600 2.7106 15 1 2.1778 -6.9534 1.8659 16 6 2.5192 -7.9210 3.7377 17 7 1.4025 -8.6138 3.6883 18 14 3.6683 -8.1048 5.1991 19 1 3.3014 -7.1161 6.2446 20 1 3.5499 -9.4776 5.7525 21 1 5.0673 -7.8663 4.7616 22 6 5.5938 -4.6853 1.5109 23 6 5.7202 -3.8414 0.2387 24 8 2.2870 -1.0887 -0.0050 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9612 2.1261 0.0004 29 1 5.1608 1.7215 -1.0262 30 1 4.6507 2.4526 0.5145 31 1 5.6680 0.9919 0.5161 32 1 2.4799 -2.7030 0.2870 33 1 3.0225 -4.1338 -0.6273 34 1 2.1506 -4.8624 1.5369 35 1 3.2128 -3.7124 2.3851 36 1 4.1549 -6.0233 0.6269 37 1 4.9710 -6.9489 2.8150 38 1 4.1171 -5.6306 3.6523 39 1 1.1753 -9.2199 4.4107 40 1 6.3929 -5.4261 1.5370 41 1 5.6684 -4.0387 2.3852 42 1 5.7374 -4.4952 -0.6334 43 1 6.6396 -3.2570 0.2752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = -31.093779 kcal Electronic energy + Delta-G solvation = -23720.663561 eV Core-core repulsion = 20346.159273 eV Total energy + Delta-G solvation = -3374.504288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.89253 -39.79535 -37.51089 -34.56573 -33.80357 -32.69015 -32.10177 -30.87580 -28.81164 -28.09217 -27.18719 -24.57240 -23.07129 -22.06980 -21.54906 -20.58182 -19.70216 -19.01462 -17.35791 -16.75204 -16.64773 -16.04206 -15.51893 -14.86743 -14.35377 -14.17294 -13.91232 -13.70403 -13.43985 -13.38816 -13.21471 -13.17778 -13.05803 -12.81536 -12.62864 -12.47410 -12.25063 -11.92510 -11.69281 -11.45966 -11.14326 -10.84165 -10.65045 -10.32604 -10.04444 -9.88963 -9.76470 -9.64261 -9.47089 -9.07225 -8.68229 -8.54873 -8.31272 -6.05748 -4.03145 1.00101 2.20585 2.48783 3.08785 3.23484 3.29611 3.37512 3.41139 4.37047 4.44214 4.58820 4.67710 5.04405 5.15148 5.19737 5.25722 5.27446 5.31532 5.37450 5.40943 5.47485 5.50963 5.60005 5.61665 5.63058 5.84542 5.90666 5.96352 6.03608 6.21082 6.24719 6.28743 6.36031 6.43608 6.62285 6.77022 6.83995 6.86741 6.96392 7.25460 7.40613 7.46288 7.78489 8.10232 8.52147 8.98644 9.57509 11.07465 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.004064 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.738065 B = 6888.031372 C = 7783.673480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.013 3.987 3 C -0.225 4.225 4 C -0.087 4.087 5 C -0.091 4.091 6 C -0.081 4.081 7 C 0.600 3.400 8 O -0.532 6.532 9 N -0.595 5.595 10 C 0.087 3.913 11 C -0.118 4.118 12 C -0.073 4.073 13 C -0.009 4.009 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.133 4.133 23 C 0.114 3.886 24 O -0.150 6.150 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.016 0.984 38 H 0.010 0.990 39 H 0.262 0.738 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 18.651 -8.442 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 C -0.244 4.244 4 C -0.090 4.090 5 C -0.147 4.147 6 C -0.132 4.132 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.327 5.327 10 C -0.034 4.034 11 C -0.156 4.156 12 C -0.092 4.092 13 C -0.046 4.046 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.171 4.171 23 C -0.008 4.008 24 O -0.047 6.047 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.170 0.830 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.891 18.409 -8.419 20.331 hybrid contribution 0.327 -0.163 0.924 0.994 sum 2.218 18.246 -7.495 19.850 Atomic orbital electron populations 1.20430 0.84715 1.04647 1.03886 1.22984 0.94521 0.84818 1.01547 1.21417 0.91832 0.99615 1.11530 1.20559 0.96295 0.92133 1.00022 1.20369 0.93861 0.97751 1.02726 1.21847 0.81965 0.93999 1.15429 1.16692 0.86008 0.81209 0.77284 1.90802 1.22728 1.75631 1.52017 1.48090 1.08835 1.05565 1.70166 1.22423 0.82290 0.98800 0.99856 1.21824 1.01520 0.96877 0.95426 1.21029 0.91689 0.95588 1.00863 1.19618 0.97685 0.94614 0.92724 1.21133 1.04517 1.22823 1.06906 0.90849 1.25017 0.94955 0.95341 0.98139 1.69907 1.23670 1.27492 1.33269 0.86817 0.82205 0.77262 0.83222 1.20405 1.21468 1.19058 1.22075 0.99572 0.98749 0.96672 1.21720 0.88403 0.91924 0.98764 1.84242 1.16084 1.33131 1.71267 0.89644 0.89825 0.89122 0.82986 0.90893 0.91667 0.89814 0.87815 0.91221 0.89067 0.92441 0.91632 0.96552 0.97129 0.92799 0.90873 0.92010 0.91330 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.41 36.01 0.37 -0.19 16 2 C 0.01 0.14 7.31 -35.41 -0.26 -0.12 16 3 C -0.22 -2.43 10.73 -39.89 -0.43 -2.86 16 4 C -0.09 -1.13 6.20 -104.43 -0.65 -1.78 16 5 C -0.09 -1.02 9.74 36.01 0.35 -0.67 16 6 C -0.08 -1.20 6.85 -36.80 -0.25 -1.45 16 7 C 0.60 9.72 7.66 -12.86 -0.10 9.62 16 8 O -0.53 -9.40 14.27 5.19 0.07 -9.33 16 9 N -0.60 -9.26 2.98 -174.58 -0.52 -9.78 16 10 C 0.09 1.32 6.28 -3.93 -0.02 1.30 16 11 C -0.12 -2.10 5.17 -26.84 -0.14 -2.23 16 12 C -0.07 -1.37 2.10 -90.58 -0.19 -1.56 16 13 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 14 C -0.52 -14.11 8.94 -34.44 -0.31 -14.41 16 15 H 0.07 2.13 7.30 -52.48 -0.38 1.75 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 18 Si 0.88 21.56 27.47 -169.99 -4.67 16.90 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.13 -2.12 5.36 -26.61 -0.14 -2.27 16 23 C 0.11 1.67 6.43 -3.72 -0.02 1.65 16 24 O -0.15 -2.03 7.08 5.01 0.04 -1.99 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.09 6.63 -51.93 -0.34 0.74 16 32 H 0.10 1.51 3.77 -55.31 -0.21 1.30 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.76 6.91 -51.93 -0.36 1.40 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 43 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -31.82 341.01 -7.82 -39.64 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.67 Total: -0.47 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.98 Total: -13.49 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.25 Total: -36.40 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.11 Total: -11.32 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.82 -7.82 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.545 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds