Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35135 * 125.61322 * 2 1 4 4 C 1.40363 * 107.11038 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.64315 * 180.02562 * 4 3 2 6 6 C 1.36539 * 106.71213 * 359.97438 * 4 3 2 7 7 C 1.46660 * 125.99011 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00013 * 352.56457 * 7 6 4 9 9 N 1.34778 * 120.00039 * 172.56346 * 7 6 4 10 10 C 1.46930 * 120.63104 * 3.47272 * 9 7 6 11 11 C 1.52757 * 109.01134 * 233.58812 * 10 9 7 12 12 C 1.53040 * 109.38295 * 305.58948 * 11 10 9 13 13 C 1.52997 * 109.45198 * 181.25367 * 12 11 10 14 14 C 1.50702 * 109.47119 * 64.93837 * 13 12 11 15 15 H 1.08005 * 119.99942 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00293 * 180.02562 * 16 14 13 18 18 Si 1.86808 * 120.00148 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46851 * 90.00134 * 18 16 14 20 20 H 1.48494 * 109.47449 * 210.00608 * 18 16 14 21 21 H 1.48502 * 109.46713 * 330.00844 * 18 16 14 22 22 C 1.53042 * 109.53784 * 61.23865 * 12 11 10 23 23 C 1.46920 * 120.63217 * 183.76014 * 9 7 6 24 24 O 1.33927 * 125.61833 * 180.26552 * 2 1 3 25 25 H 1.09003 * 109.47049 * 89.99838 * 1 2 3 26 26 H 1.08993 * 109.47580 * 210.00044 * 1 2 3 27 27 H 1.09001 * 109.47302 * 330.00523 * 1 2 3 28 28 H 1.08004 * 126.44629 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46832 * 269.95420 * 5 4 3 30 30 H 1.08995 * 109.47118 * 29.95198 * 5 4 3 31 31 H 1.08998 * 109.46994 * 149.96035 * 5 4 3 32 32 H 1.09003 * 109.58329 * 353.42157 * 10 9 7 33 33 H 1.08996 * 109.58640 * 113.84516 * 10 9 7 34 34 H 1.08994 * 109.56903 * 185.55349 * 11 10 9 35 35 H 1.09002 * 109.35844 * 65.49639 * 11 10 9 36 36 H 1.09005 * 109.45996 * 301.21865 * 12 11 10 37 37 H 1.09003 * 109.47215 * 184.93802 * 13 12 11 38 38 H 1.09003 * 109.47141 * 304.93357 * 13 12 11 39 39 H 0.96996 * 120.00288 * 179.97438 * 17 16 14 40 40 H 1.09006 * 109.49801 * 178.68617 * 22 12 11 41 41 H 1.08995 * 109.52685 * 58.60607 * 22 12 11 42 42 H 1.09008 * 109.58353 * 246.15591 * 23 9 7 43 43 H 1.09001 * 109.58855 * 6.43217 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0006 5 6 4.8617 1.5144 0.0014 6 6 3.5823 -0.7116 0.0015 7 6 4.7415 -1.6101 0.0019 8 8 5.8626 -1.1570 -0.1351 9 7 4.5650 -2.9376 0.1539 10 6 3.2139 -3.5077 0.2442 11 6 3.1154 -4.3560 1.5108 12 6 4.2383 -5.3958 1.5144 13 6 4.1224 -6.2665 2.7670 14 6 2.8424 -7.0600 2.7106 15 1 2.1778 -6.9534 1.8659 16 6 2.5192 -7.9210 3.7377 17 7 1.4025 -8.6138 3.6883 18 14 3.6683 -8.1048 5.1991 19 1 3.3014 -7.1161 6.2446 20 1 3.5499 -9.4776 5.7525 21 1 5.0673 -7.8663 4.7616 22 6 5.5938 -4.6853 1.5109 23 6 5.7202 -3.8414 0.2387 24 8 2.2870 -1.0887 -0.0050 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9612 2.1261 0.0004 29 1 5.1608 1.7215 -1.0262 30 1 4.6507 2.4526 0.5145 31 1 5.6680 0.9919 0.5161 32 1 2.4799 -2.7030 0.2870 33 1 3.0225 -4.1338 -0.6273 34 1 2.1506 -4.8624 1.5369 35 1 3.2128 -3.7124 2.3851 36 1 4.1549 -6.0233 0.6269 37 1 4.9710 -6.9489 2.8150 38 1 4.1171 -5.6306 3.6523 39 1 1.1753 -9.2199 4.4107 40 1 6.3929 -5.4261 1.5370 41 1 5.6684 -4.0387 2.3852 42 1 5.7374 -4.4952 -0.6334 43 1 6.6396 -3.2570 0.2752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335500444.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = -49.258556 kcal Electronic energy + Delta-G solvation = -23721.451245 eV Core-core repulsion = 20346.159273 eV Total energy + Delta-G solvation = -3375.291972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.83321 -41.03193 -38.86794 -35.91987 -35.05747 -34.12262 -33.39032 -32.13286 -30.48775 -28.91009 -28.29422 -26.11063 -24.37009 -23.53812 -22.47275 -21.96085 -20.91042 -20.25265 -18.88785 -18.46540 -17.65663 -17.26145 -16.55480 -16.33467 -16.00233 -15.35700 -15.32825 -15.00807 -14.60215 -14.55247 -14.31957 -14.24591 -14.02429 -13.99431 -13.71054 -13.66814 -13.33928 -13.24920 -13.09987 -12.78654 -12.54870 -12.41155 -12.16621 -11.99324 -11.73150 -11.43606 -11.29519 -11.00810 -10.92443 -10.72728 -10.63821 -9.85460 -9.34835 -8.25772 -6.27429 -0.01403 1.33203 1.35379 1.37260 1.48279 1.51715 1.96263 2.10351 2.37380 3.09846 3.38750 3.71624 3.78013 3.91445 3.95574 4.03316 4.13827 4.32617 4.36819 4.46140 4.51268 4.57791 4.64678 4.68219 4.72986 4.76625 4.81624 4.88770 4.93022 4.98878 5.04517 5.13762 5.15736 5.18662 5.27341 5.33373 5.39221 5.50880 5.58892 5.69032 5.72136 5.91604 6.26171 6.33820 6.79670 6.90758 7.36455 8.90463 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.004064 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.738065 B = 6888.031372 C = 7783.673480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.017 3.983 3 C -0.229 4.229 4 C -0.086 4.086 5 C -0.089 4.089 6 C -0.122 4.122 7 C 0.596 3.404 8 O -0.554 6.554 9 N -0.599 5.599 10 C 0.098 3.902 11 C -0.111 4.111 12 C -0.070 4.070 13 C -0.007 4.007 14 C -0.517 4.517 15 H 0.041 0.959 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.249 1.249 22 C -0.123 4.123 23 C 0.116 3.884 24 O -0.165 6.165 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.184 0.816 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.010 0.990 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 20.597 -8.467 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 C -0.247 4.247 4 C -0.089 4.089 5 C -0.146 4.146 6 C -0.172 4.172 7 C 0.386 3.614 8 O -0.436 6.436 9 N -0.330 5.330 10 C -0.024 4.024 11 C -0.149 4.149 12 C -0.089 4.089 13 C -0.044 4.044 14 C -0.555 4.555 15 H 0.060 0.940 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.766 3.234 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.172 1.172 22 C -0.161 4.161 23 C -0.006 4.006 24 O -0.064 6.064 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.134 0.866 28 H 0.201 0.799 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.379 20.364 -8.454 22.177 hybrid contribution 0.050 -0.698 0.870 1.116 sum 2.429 19.666 -7.585 21.217 Atomic orbital electron populations 1.20666 0.81885 1.05774 1.05344 1.23832 0.96050 0.84207 0.99370 1.21779 0.90615 1.01104 1.11229 1.20978 0.97881 0.91783 0.98298 1.20399 0.92634 0.98317 1.03210 1.21695 0.82149 0.94469 1.18926 1.16911 0.86359 0.81351 0.76741 1.90774 1.23690 1.75981 1.53185 1.48141 1.08921 1.05720 1.70213 1.22299 0.82731 0.98777 0.98560 1.21678 0.99950 0.96649 0.96656 1.20945 0.93909 0.95455 0.98581 1.19576 0.95319 0.94700 0.94795 1.21448 1.05577 1.22823 1.05618 0.94035 1.25906 0.96562 0.95239 1.01369 1.70051 1.25831 1.28787 1.34558 0.85788 0.80796 0.77312 0.79530 1.19705 1.21220 1.17220 1.21963 0.97992 0.98877 0.97250 1.21736 0.88403 0.91854 0.98568 1.84148 1.15916 1.34457 1.71831 0.87865 0.90058 0.86601 0.79880 0.90190 0.89095 0.91869 0.86944 0.90385 0.91413 0.93236 0.92007 0.96277 0.97154 0.92723 0.89352 0.92560 0.89842 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.41 71.24 0.74 -0.15 16 2 C 0.02 0.33 7.31 24.97 0.18 0.52 16 3 C -0.23 -4.35 10.73 22.07 0.24 -4.11 16 4 C -0.09 -2.13 6.20 -19.74 -0.12 -2.25 16 5 C -0.09 -1.89 9.74 71.24 0.69 -1.19 16 6 C -0.12 -3.53 6.85 24.07 0.16 -3.37 16 7 C 0.60 19.23 7.66 86.44 0.66 19.89 16 8 O -0.55 -19.58 14.27 -4.33 -0.06 -19.64 16 9 N -0.60 -18.35 2.98 -824.47 -2.46 -20.80 16 10 C 0.10 2.94 6.28 86.22 0.54 3.48 16 11 C -0.11 -3.98 5.17 30.53 0.16 -3.83 16 12 C -0.07 -2.62 2.10 -10.77 -0.02 -2.64 16 13 C -0.01 -0.30 3.52 29.85 0.10 -0.19 16 14 C -0.52 -28.81 8.94 25.60 0.23 -28.58 16 15 H 0.04 2.51 7.30 -2.91 -0.02 2.49 16 16 C 0.01 0.33 5.47 84.65 0.46 0.79 16 17 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 18 Si 0.94 44.27 27.47 68.60 1.88 46.16 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 22 C -0.12 -3.77 5.36 30.67 0.16 -3.61 16 23 C 0.12 3.27 6.43 86.36 0.55 3.83 16 24 O -0.17 -4.34 7.08 -5.00 -0.04 -4.37 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.61 6.63 -2.39 -0.02 1.60 16 32 H 0.11 3.27 3.77 -56.03 -0.21 3.05 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.73 6.91 -2.39 -0.02 2.71 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 38 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 39 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.09 2.45 8.14 -2.38 -0.02 2.44 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.09 2.57 7.02 -2.39 -0.02 2.55 16 Total: -1.00 -69.89 341.01 5.12 -64.76 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.74 Total: 13.99 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.75 Total: -21.43 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.16 Total: -79.47 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.10 Total: -24.02 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -69.89 5.12 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500444.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.505 kcal (2) G-P(sol) polarization free energy of solvation -69.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds