Wall clock time and date at job start Tue Mar 31 2020 07:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34183 * 127.02257 * 2 1 4 4 O 1.34212 * 109.12377 * 180.26699 * 3 2 1 5 5 C 1.33655 * 110.90882 * 359.70610 * 4 3 2 6 6 C 1.50701 * 125.79736 * 180.02562 * 5 4 3 7 7 C 1.36418 * 108.39672 * 0.02562 * 5 4 3 8 8 C 1.47373 * 127.19026 * 180.02562 * 7 5 4 9 9 O 1.21612 * 120.00440 * 90.02080 * 8 7 5 10 10 N 1.34787 * 119.99696 * 270.02088 * 8 7 5 11 11 C 1.46924 * 120.63033 * 359.72203 * 10 8 7 12 12 C 1.53187 * 108.77642 * 126.66473 * 11 10 8 13 13 C 1.53041 * 109.31211 * 54.63373 * 12 11 10 14 14 C 1.52994 * 109.46090 * 178.61149 * 13 12 11 15 15 C 1.50705 * 109.47418 * 295.07073 * 14 13 12 16 16 H 1.07998 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99633 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99213 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47350 * 60.00452 * 19 17 15 21 21 H 1.48506 * 109.46729 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47403 * 299.99470 * 19 17 15 23 23 C 1.53038 * 109.53768 * 298.63806 * 13 12 11 24 24 C 1.46926 * 120.62918 * 180.02562 * 10 8 7 25 25 H 1.08991 * 109.47352 * 270.20301 * 1 2 3 26 26 H 1.08999 * 109.47129 * 30.20772 * 1 2 3 27 27 H 1.09000 * 109.46562 * 150.20106 * 1 2 3 28 28 H 1.07998 * 125.43596 * 359.97241 * 3 2 1 29 29 H 1.08997 * 109.46958 * 269.99615 * 6 5 4 30 30 H 1.08995 * 109.47384 * 30.00192 * 6 5 4 31 31 H 1.09006 * 109.46388 * 150.00301 * 6 5 4 32 32 H 1.09003 * 109.58516 * 246.45674 * 11 10 8 33 33 H 1.09002 * 109.58479 * 6.87832 * 11 10 8 34 34 H 1.08999 * 109.49975 * 294.68379 * 12 11 10 35 35 H 1.08998 * 109.50042 * 174.58459 * 12 11 10 36 36 H 1.09007 * 109.44471 * 58.64946 * 13 12 11 37 37 H 1.09007 * 109.46925 * 55.07096 * 14 13 12 38 38 H 1.08998 * 109.47122 * 175.06865 * 14 13 12 39 39 H 0.96998 * 120.00415 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.49677 * 301.40907 * 23 13 12 41 41 H 1.09001 * 109.52131 * 181.33314 * 23 13 12 42 42 H 1.09002 * 109.58798 * 353.11768 * 24 10 8 43 43 H 1.08996 * 109.58781 * 113.40238 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6759 -0.0035 6 6 4.9292 -1.4919 -0.0080 7 6 2.3923 -1.1738 0.0037 8 6 1.9914 -2.5919 0.0091 9 8 1.8306 -3.1744 1.0644 10 7 1.8031 -3.2434 -1.1558 11 6 1.9876 -2.5516 -2.4388 12 6 2.9653 -3.3590 -3.2982 13 6 2.4576 -4.7970 -3.4269 14 6 3.4136 -5.5977 -4.3133 15 6 3.3893 -5.0380 -5.7123 16 1 2.7557 -4.1951 -5.9457 17 6 4.1768 -5.6013 -6.6939 18 7 4.9487 -6.6274 -6.4096 19 14 4.1471 -4.9070 -8.4278 20 1 4.5726 -3.4845 -8.3988 21 1 5.0758 -5.6835 -9.2879 22 1 2.7697 -5.0006 -8.9751 23 6 2.3877 -5.4411 -2.0404 24 6 1.4029 -4.6571 -1.1666 25 1 -0.3633 0.0036 1.0276 26 1 -0.3633 0.8881 -0.5171 27 1 -0.3632 -0.8918 -0.5107 28 1 1.9895 2.1011 -0.0004 29 1 5.2296 -1.6908 -1.0367 30 1 5.7191 -0.9395 0.5009 31 1 4.7551 -2.4359 0.5086 32 1 1.0294 -2.4720 -2.9521 33 1 2.3934 -1.5555 -2.2617 34 1 3.9481 -3.3611 -2.8268 35 1 3.0371 -2.9087 -4.2882 36 1 1.4642 -4.7923 -3.8757 37 1 4.4248 -5.5290 -3.9120 38 1 3.1012 -6.6418 -4.3342 39 1 5.5030 -7.0234 -7.1001 40 1 3.3759 -5.4235 -1.5808 41 1 2.0486 -6.4727 -2.1347 42 1 1.4229 -5.0503 -0.1502 43 1 0.3961 -4.7487 -1.5741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335501508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:16 Heat of formation + Delta-G solvation = -45.562917 kcal Electronic energy + Delta-G solvation = -23871.859988 eV Core-core repulsion = 20496.728271 eV Total energy + Delta-G solvation = -3375.131717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.65928 -39.76580 -37.26812 -34.20268 -33.83407 -32.66859 -32.03879 -30.73494 -28.49635 -27.87814 -26.58554 -24.86435 -23.15580 -22.73942 -21.26808 -19.97582 -19.67719 -18.63700 -17.44775 -16.60931 -16.29948 -15.96510 -15.42889 -15.01953 -14.55208 -14.23321 -13.74571 -13.72386 -13.49407 -13.39954 -13.14996 -12.97151 -12.91227 -12.76811 -12.66286 -12.47972 -12.23775 -11.82536 -11.44970 -11.19845 -11.01786 -10.80943 -10.71056 -10.47599 -10.15422 -9.94660 -9.71073 -9.41150 -9.26448 -8.99718 -8.54900 -8.38400 -8.35209 -6.01715 -4.03905 1.54721 2.12835 2.61261 2.75228 3.24819 3.30478 3.35878 3.37333 4.35270 4.43414 4.58389 4.80044 4.95011 5.16556 5.18459 5.33318 5.36160 5.37427 5.45650 5.46392 5.49163 5.53781 5.61253 5.66941 5.69153 5.78033 5.81044 5.98683 6.04126 6.08391 6.26559 6.35720 6.38943 6.50406 6.67605 6.94508 6.96802 6.97428 7.08835 7.55059 7.64588 7.79202 7.97723 8.26699 8.40084 9.02334 9.60006 11.09467 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.004054 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.575763 B = 6904.258260 C = 7362.064678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.150 4.150 3 C -0.043 4.043 4 O -0.173 6.173 5 C 0.044 3.956 6 C -0.082 4.082 7 C -0.221 4.221 8 C 0.591 3.409 9 O -0.545 6.545 10 N -0.595 5.595 11 C 0.107 3.893 12 C -0.117 4.117 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.128 4.128 24 C 0.111 3.889 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.206 0.794 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 13.543 11.978 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.152 4.152 3 C -0.109 4.109 4 O -0.070 6.070 5 C -0.008 4.008 6 C -0.138 4.138 7 C -0.225 4.225 8 C 0.379 3.621 9 O -0.423 6.423 10 N -0.327 5.327 11 C -0.016 4.016 12 C -0.155 4.155 13 C -0.100 4.100 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.167 4.167 24 C -0.011 4.011 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.222 0.778 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.342 13.277 12.440 18.962 hybrid contribution -0.145 0.337 -1.157 1.214 sum -5.487 13.614 11.283 18.514 Atomic orbital electron populations 1.20170 0.88753 1.02777 1.02385 1.21325 0.96751 0.90599 1.06480 1.23574 0.79728 0.99415 1.08177 1.83715 1.29485 1.21953 1.71846 1.22544 0.96125 0.80659 1.01458 1.20472 0.90994 0.97790 1.04555 1.20963 0.93157 0.94062 1.14326 1.17343 0.76644 0.84671 0.83482 1.90762 1.52232 1.68344 1.30979 1.48135 1.66813 1.11860 1.05883 1.21903 1.00293 0.96024 0.83358 1.21895 0.97495 0.96443 0.99689 1.21199 1.00624 0.94354 0.93778 1.19115 0.93708 0.94761 0.93281 1.21194 1.24383 1.15404 0.94554 0.92686 1.25008 0.95554 0.95031 0.98766 1.69947 1.26847 1.23013 1.33654 0.86721 0.77859 0.79064 0.84711 1.20295 1.21356 1.20294 1.22028 0.98944 0.99069 0.96613 1.21718 0.98029 0.79710 1.01603 0.91149 0.91174 0.91476 0.77792 0.88925 0.89892 0.89075 0.91633 0.90528 0.92349 0.89721 0.92334 0.96643 0.96589 0.92979 0.92042 0.91027 0.89621 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.38 36.01 0.37 -0.44 16 2 C -0.15 -1.78 6.38 -102.49 -0.65 -2.43 16 3 C -0.04 -0.44 11.96 29.30 0.35 -0.08 16 4 O -0.17 -2.08 10.52 7.65 0.08 -2.00 16 5 C 0.04 0.57 7.26 -34.96 -0.25 0.31 16 6 C -0.08 -0.89 10.24 36.01 0.37 -0.52 16 7 C -0.22 -3.14 4.06 -103.28 -0.42 -3.56 16 8 C 0.59 9.60 7.14 -12.54 -0.09 9.51 16 9 O -0.54 -10.47 16.52 5.27 0.09 -10.38 16 10 N -0.59 -9.07 2.97 -174.03 -0.52 -9.59 16 11 C 0.11 1.54 6.34 -3.71 -0.02 1.51 16 12 C -0.12 -2.00 5.19 -26.61 -0.14 -2.14 16 13 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 15 C -0.52 -13.81 8.39 -34.44 -0.29 -14.10 16 16 H 0.05 1.41 7.05 -52.49 -0.37 1.04 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.13 -2.13 5.36 -26.59 -0.14 -2.27 16 24 C 0.11 1.68 6.43 -3.69 -0.02 1.65 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.21 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.04 6.25 -51.93 -0.32 0.72 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.54 6.91 -51.93 -0.36 1.18 16 36 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.32 7.01 -51.93 -0.36 0.96 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -32.06 352.65 -7.55 -39.61 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.88 Total: -1.20 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.35 Total: -12.22 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.22 Total: -35.14 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.17 Total: -12.39 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.06 -7.55 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335501508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.951 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds