Wall clock time and date at job start Tue Mar 31 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34183 * 127.02257 * 2 1 4 4 O 1.34212 * 109.12377 * 180.26699 * 3 2 1 5 5 C 1.33655 * 110.90882 * 359.70610 * 4 3 2 6 6 C 1.50701 * 125.79736 * 180.02562 * 5 4 3 7 7 C 1.36418 * 108.39672 * 0.02562 * 5 4 3 8 8 C 1.47373 * 127.19026 * 180.02562 * 7 5 4 9 9 O 1.21612 * 120.00440 * 90.02080 * 8 7 5 10 10 N 1.34787 * 119.99696 * 270.02088 * 8 7 5 11 11 C 1.46924 * 120.63033 * 359.72203 * 10 8 7 12 12 C 1.53187 * 108.77642 * 126.66473 * 11 10 8 13 13 C 1.53041 * 109.31211 * 54.63373 * 12 11 10 14 14 C 1.52994 * 109.46090 * 178.61149 * 13 12 11 15 15 C 1.50705 * 109.47418 * 295.07073 * 14 13 12 16 16 H 1.07998 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99633 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99213 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47350 * 60.00452 * 19 17 15 21 21 H 1.48506 * 109.46729 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47403 * 299.99470 * 19 17 15 23 23 C 1.53038 * 109.53768 * 298.63806 * 13 12 11 24 24 C 1.46926 * 120.62918 * 180.02562 * 10 8 7 25 25 H 1.08991 * 109.47352 * 270.20301 * 1 2 3 26 26 H 1.08999 * 109.47129 * 30.20772 * 1 2 3 27 27 H 1.09000 * 109.46562 * 150.20106 * 1 2 3 28 28 H 1.07998 * 125.43596 * 359.97241 * 3 2 1 29 29 H 1.08997 * 109.46958 * 269.99615 * 6 5 4 30 30 H 1.08995 * 109.47384 * 30.00192 * 6 5 4 31 31 H 1.09006 * 109.46388 * 150.00301 * 6 5 4 32 32 H 1.09003 * 109.58516 * 246.45674 * 11 10 8 33 33 H 1.09002 * 109.58479 * 6.87832 * 11 10 8 34 34 H 1.08999 * 109.49975 * 294.68379 * 12 11 10 35 35 H 1.08998 * 109.50042 * 174.58459 * 12 11 10 36 36 H 1.09007 * 109.44471 * 58.64946 * 13 12 11 37 37 H 1.09007 * 109.46925 * 55.07096 * 14 13 12 38 38 H 1.08998 * 109.47122 * 175.06865 * 14 13 12 39 39 H 0.96998 * 120.00415 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.49677 * 301.40907 * 23 13 12 41 41 H 1.09001 * 109.52131 * 181.33314 * 23 13 12 42 42 H 1.09002 * 109.58798 * 353.11768 * 24 10 8 43 43 H 1.08996 * 109.58781 * 113.40238 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6623 -0.6759 -0.0035 6 6 4.9292 -1.4919 -0.0080 7 6 2.3923 -1.1738 0.0037 8 6 1.9914 -2.5919 0.0091 9 8 1.8306 -3.1744 1.0644 10 7 1.8031 -3.2434 -1.1558 11 6 1.9876 -2.5516 -2.4388 12 6 2.9653 -3.3590 -3.2982 13 6 2.4576 -4.7970 -3.4269 14 6 3.4136 -5.5977 -4.3133 15 6 3.3893 -5.0380 -5.7123 16 1 2.7557 -4.1951 -5.9457 17 6 4.1768 -5.6013 -6.6939 18 7 4.9487 -6.6274 -6.4096 19 14 4.1471 -4.9070 -8.4278 20 1 4.5726 -3.4845 -8.3988 21 1 5.0758 -5.6835 -9.2879 22 1 2.7697 -5.0006 -8.9751 23 6 2.3877 -5.4411 -2.0404 24 6 1.4029 -4.6571 -1.1666 25 1 -0.3633 0.0036 1.0276 26 1 -0.3633 0.8881 -0.5171 27 1 -0.3632 -0.8918 -0.5107 28 1 1.9895 2.1011 -0.0004 29 1 5.2296 -1.6908 -1.0367 30 1 5.7191 -0.9395 0.5009 31 1 4.7551 -2.4359 0.5086 32 1 1.0294 -2.4720 -2.9521 33 1 2.3934 -1.5555 -2.2617 34 1 3.9481 -3.3611 -2.8268 35 1 3.0371 -2.9087 -4.2882 36 1 1.4642 -4.7923 -3.8757 37 1 4.4248 -5.5290 -3.9120 38 1 3.1012 -6.6418 -4.3342 39 1 5.5030 -7.0234 -7.1001 40 1 3.3759 -5.4235 -1.5808 41 1 2.0486 -6.4727 -2.1347 42 1 1.4229 -5.0503 -0.1502 43 1 0.3961 -4.7487 -1.5741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335501508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:15 Heat of formation + Delta-G solvation = -63.415685 kcal Electronic energy + Delta-G solvation = -23872.634142 eV Core-core repulsion = 20496.728271 eV Total energy + Delta-G solvation = -3375.905871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.55970 -41.04829 -38.70049 -35.71711 -34.95441 -33.97562 -33.45208 -32.03874 -29.96300 -29.03532 -27.47433 -26.44492 -24.53073 -24.14495 -22.71253 -21.14814 -20.78492 -19.82631 -18.56752 -18.38059 -17.65851 -17.02435 -16.53317 -16.49178 -16.20959 -15.32435 -15.17425 -14.92423 -14.71873 -14.41952 -14.34963 -14.16658 -14.06604 -13.89854 -13.76754 -13.57919 -13.40808 -13.28326 -12.98016 -12.75263 -12.48964 -12.33393 -12.28991 -12.15466 -11.78724 -11.38657 -11.23321 -11.03733 -10.85853 -10.50581 -10.35053 -9.69510 -9.41937 -8.14410 -6.23785 0.62599 1.24830 1.38643 1.43131 1.44933 1.52410 1.85174 2.11573 2.44334 3.19495 3.46943 3.56265 3.89220 3.91972 4.02462 4.12155 4.16886 4.21189 4.35992 4.37469 4.50695 4.53450 4.60296 4.66471 4.74146 4.76737 4.79434 4.87304 4.94366 4.99224 5.01758 5.08730 5.17781 5.30357 5.32338 5.38178 5.49096 5.53523 5.58960 5.82353 5.91090 6.08610 6.29344 6.33145 6.92699 7.01970 7.44978 8.97290 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019365 B = 0.004054 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.575763 B = 6904.258260 C = 7362.064678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.170 4.170 3 C -0.027 4.027 4 O -0.177 6.177 5 C 0.038 3.962 6 C -0.082 4.082 7 C -0.250 4.250 8 C 0.594 3.406 9 O -0.582 6.582 10 N -0.594 5.594 11 C 0.119 3.881 12 C -0.110 4.110 13 C -0.073 4.073 14 C 0.034 3.966 15 C -0.527 4.527 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.937 5.937 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.268 1.268 23 C -0.120 4.120 24 C 0.117 3.883 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.052 0.948 28 H 0.249 0.751 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.063 0.937 37 H -0.014 1.014 38 H -0.013 1.013 39 H 0.261 0.739 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 16.317 11.495 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.172 4.172 3 C -0.092 4.092 4 O -0.073 6.073 5 C -0.014 4.014 6 C -0.138 4.138 7 C -0.254 4.254 8 C 0.383 3.617 9 O -0.463 6.463 10 N -0.325 5.325 11 C -0.003 4.003 12 C -0.148 4.148 13 C -0.091 4.091 14 C -0.003 4.003 15 C -0.565 4.565 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.578 5.578 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.193 1.193 23 C -0.158 4.158 24 C -0.005 4.005 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.500 16.068 11.948 21.052 hybrid contribution 0.231 -0.540 -0.976 1.139 sum -6.269 15.528 10.972 20.020 Atomic orbital electron populations 1.20204 0.87464 1.03463 1.02662 1.21630 0.97816 0.90083 1.07624 1.24402 0.78525 1.00808 1.05471 1.83741 1.30612 1.21275 1.71658 1.22756 0.96213 0.81242 1.01204 1.20502 0.91162 0.97339 1.04804 1.21020 0.94573 0.93507 1.16308 1.17648 0.75677 0.85483 0.82942 1.90734 1.53961 1.69420 1.32210 1.48192 1.66360 1.11860 1.06112 1.21821 1.00286 0.95786 0.82394 1.21766 0.97857 0.95409 0.99781 1.21039 0.99208 0.94951 0.93913 1.19003 0.93426 0.94003 0.93898 1.21626 1.23987 1.15402 0.95442 0.91580 1.25923 0.95256 0.95343 1.03291 1.70097 1.27980 1.24659 1.35031 0.85613 0.78139 0.78655 0.79326 1.19031 1.21521 1.19250 1.21908 0.98975 0.99512 0.95437 1.21661 0.98301 0.79529 1.01021 0.91103 0.88326 0.92900 0.73513 0.88686 0.87727 0.90421 0.89933 0.89254 0.93284 0.90596 0.91858 0.99524 0.99482 0.93072 0.93263 0.90655 0.89964 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.38 71.24 0.74 -0.64 16 2 C -0.17 -3.63 6.38 -18.49 -0.12 -3.75 16 3 C -0.03 -0.45 11.96 66.89 0.80 0.35 16 4 O -0.18 -3.80 10.52 4.47 0.05 -3.75 16 5 C 0.04 0.93 7.26 25.26 0.18 1.11 16 6 C -0.08 -1.72 10.24 71.24 0.73 -1.00 16 7 C -0.25 -6.81 4.06 -18.99 -0.08 -6.89 16 8 C 0.59 19.04 7.14 86.65 0.62 19.65 16 9 O -0.58 -22.59 16.52 -4.07 -0.07 -22.65 16 10 N -0.59 -17.60 2.97 -822.77 -2.45 -20.04 16 11 C 0.12 3.24 6.34 86.36 0.55 3.78 16 12 C -0.11 -3.70 5.19 30.67 0.16 -3.54 16 13 C -0.07 -2.75 2.10 -10.77 -0.02 -2.78 16 14 C 0.03 1.70 4.45 29.85 0.13 1.83 16 15 C -0.53 -28.28 8.39 25.60 0.21 -28.07 16 16 H 0.07 3.33 7.05 -2.91 -0.02 3.31 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 19 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 C -0.12 -4.01 5.36 30.68 0.16 -3.85 16 24 C 0.12 3.44 6.43 86.37 0.56 3.99 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.25 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.83 7.93 -2.38 -0.02 1.82 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.26 6.25 -2.39 -0.01 2.24 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 2.69 6.91 -2.39 -0.02 2.68 16 36 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 37 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.08 2.53 7.01 -2.39 -0.02 2.51 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -70.46 352.65 5.92 -64.54 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.99 Total: 12.27 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 5.09 Total: -19.37 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -2.16 Total: -76.03 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.02 Total: -26.40 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.46 5.92 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335501508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.127 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds