Wall clock time and date at job start Tue Mar 31 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38284 * 119.96903 * 2 1 4 4 C 1.38249 * 120.10621 * 180.29439 * 3 2 1 5 5 C 1.50704 * 119.96980 * 179.73058 * 4 3 2 6 6 C 1.38162 * 120.05539 * 359.45804 * 4 3 2 7 7 C 1.50704 * 120.02440 * 180.29625 * 6 4 3 8 8 C 1.38707 * 119.94769 * 0.26733 * 6 4 3 9 9 O 1.35898 * 120.05653 * 179.97438 * 8 6 4 10 10 C 1.42900 * 116.99844 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47207 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47299 * 180.02562 * 11 10 9 13 13 O 1.21295 * 120.00278 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00335 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99554 * 359.97438 * 14 12 11 16 16 C 1.37088 * 120.00106 * 180.02562 * 14 12 11 17 17 H 1.08002 * 120.00674 * 24.39378 * 16 14 12 18 18 C 1.38952 * 119.99852 * 204.39128 * 16 14 12 19 19 N 1.31415 * 120.00264 * 12.64255 * 18 16 14 20 20 Si 1.86805 * 120.00206 * 192.64164 * 18 16 14 21 21 H 1.48497 * 109.46769 * 60.00016 * 20 18 16 22 22 H 1.48494 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47067 * 300.00182 * 20 18 16 24 24 C 1.38126 * 119.97160 * 179.75408 * 2 1 3 25 25 H 1.09005 * 109.47001 * 270.24738 * 1 2 3 26 26 H 1.09000 * 109.47217 * 30.24824 * 1 2 3 27 27 H 1.09003 * 109.46893 * 150.24698 * 1 2 3 28 28 H 1.07993 * 119.94858 * 0.05058 * 3 2 1 29 29 H 1.09007 * 109.46651 * 269.72858 * 5 4 3 30 30 H 1.08999 * 109.47244 * 29.72746 * 5 4 3 31 31 H 1.09004 * 109.47263 * 149.72928 * 5 4 3 32 32 H 1.08996 * 109.47371 * 90.00068 * 7 6 4 33 33 H 1.09006 * 109.47054 * 209.99728 * 7 6 4 34 34 H 1.09001 * 109.47529 * 329.99477 * 7 6 4 35 35 H 1.08995 * 109.47568 * 300.00553 * 10 9 8 36 36 H 1.09003 * 109.47009 * 60.00831 * 10 9 8 37 37 H 1.08995 * 109.47290 * 300.00702 * 11 10 9 38 38 H 1.09003 * 109.46475 * 60.00482 * 11 10 9 39 39 H 1.09003 * 109.47003 * 85.86930 * 15 14 12 40 40 H 1.08998 * 109.47068 * 205.86864 * 15 14 12 41 41 H 1.08998 * 109.47243 * 325.86434 * 15 14 12 42 42 H 0.96998 * 120.00251 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.02719 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0061 5 6 4.3300 2.5086 -0.0123 6 6 4.2751 0.0071 -0.0010 7 6 5.7822 0.0116 -0.0009 8 6 3.5846 -1.1958 0.0047 9 8 4.2658 -2.3717 0.0093 10 6 3.4893 -3.5713 0.0145 11 6 4.4231 -4.7833 0.0198 12 6 3.6042 -6.0484 0.0246 13 8 2.3928 -5.9867 0.0245 14 7 4.2178 -7.2484 0.0303 15 6 5.6810 -7.3229 0.0310 16 6 3.4728 -8.3992 0.0342 17 1 2.4647 -8.3913 -0.3533 18 6 4.0148 -9.5759 0.5365 19 7 5.1313 -9.5421 1.2288 20 14 3.1562 -11.2060 0.2280 21 1 3.0653 -11.4485 -1.2342 22 1 3.9311 -12.3017 0.8637 23 1 1.7901 -11.1637 0.8086 24 6 2.1971 -1.1965 0.0051 25 1 -0.3633 0.0044 1.0277 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.6565 2.1324 0.0008 29 1 4.5103 2.8191 -1.0415 30 1 3.7388 3.2688 0.4983 31 1 5.2830 2.3834 0.5018 32 1 6.1455 0.0171 1.0267 33 1 6.1482 -0.8796 -0.5109 34 1 6.1430 0.9004 -0.5187 35 1 2.8608 -3.5935 0.9047 36 1 2.8603 -3.6008 -0.8752 37 1 5.0519 -4.7614 -0.8702 38 1 5.0518 -4.7536 0.9097 39 1 6.0472 -7.2628 1.0559 40 1 5.9969 -8.2668 -0.4130 41 1 6.0873 -6.4945 -0.5492 42 1 5.5098 -10.3636 1.5792 43 1 1.6571 -2.1318 0.0096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337252141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:23 Heat of formation + Delta-G solvation = -61.855679 kcal Electronic energy + Delta-G solvation = -22760.771475 eV Core-core repulsion = 19384.933251 eV Total energy + Delta-G solvation = -3375.838224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32013 -38.63176 -37.63666 -34.77186 -34.35854 -32.15282 -31.55451 -30.33142 -29.23950 -27.20625 -26.39946 -25.24694 -24.55859 -23.18550 -21.46353 -20.15398 -18.71476 -17.40025 -16.86349 -16.31973 -16.04804 -15.80078 -15.36754 -14.66014 -14.44383 -14.09005 -13.89649 -13.81207 -13.41543 -13.37377 -12.94032 -12.85328 -12.81175 -12.44854 -12.34108 -12.05865 -11.89207 -11.62907 -11.45354 -11.35381 -11.28544 -11.15449 -11.04199 -10.85859 -10.57874 -10.42415 -10.35513 -10.21904 -9.03471 -8.49234 -8.49071 -7.96480 -7.70603 -6.35729 -3.92533 1.30412 1.49177 3.16922 3.22224 3.23939 3.32562 3.69710 3.83580 4.13883 4.68851 4.73538 4.90299 5.03906 5.08067 5.11915 5.14495 5.25393 5.31919 5.39960 5.43789 5.47558 5.54247 5.65415 5.67885 5.70823 5.72599 5.77991 5.79913 5.95956 5.97416 6.16182 6.23911 6.28191 6.38167 6.44130 6.54275 6.63217 6.82547 6.88969 7.16976 7.53422 7.59165 8.09468 8.43831 9.13656 9.37420 9.92219 10.69160 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.002977 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.916973 B = 9401.648858 C =10256.799521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.162 4.162 4 C -0.052 4.052 5 C -0.113 4.113 6 C -0.130 4.130 7 C -0.104 4.104 8 C 0.146 3.854 9 O -0.316 6.316 10 C 0.080 3.920 11 C -0.127 4.127 12 C 0.449 3.551 13 O -0.594 6.594 14 N -0.442 5.442 15 C 0.109 3.891 16 C -0.309 4.309 17 H 0.098 0.902 18 C 0.031 3.969 19 N -0.881 5.881 20 Si 0.928 3.072 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.211 4.211 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.028 0.972 42 H 0.269 0.731 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.592 19.554 -2.329 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.050 4.050 3 C -0.180 4.180 4 C -0.052 4.052 5 C -0.170 4.170 6 C -0.130 4.130 7 C -0.160 4.160 8 C 0.100 3.900 9 O -0.229 6.229 10 C 0.005 3.995 11 C -0.168 4.168 12 C 0.237 3.763 13 O -0.480 6.480 14 N -0.160 5.160 15 C -0.034 4.034 16 C -0.437 4.437 17 H 0.116 0.884 18 C -0.172 4.172 19 N -0.520 5.520 20 Si 0.754 3.246 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.229 4.229 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.366 19.350 -2.232 19.482 hybrid contribution -0.435 -1.091 0.014 1.175 sum -0.069 18.259 -2.218 18.394 Atomic orbital electron populations 1.20808 0.91173 1.02780 1.02414 1.19655 0.95887 0.92445 0.97019 1.20709 0.93297 0.97296 1.06735 1.19501 0.93456 0.94068 0.98190 1.20801 1.00139 0.93722 1.02290 1.19041 0.96323 0.89878 1.07803 1.20601 0.90752 1.02595 1.02073 1.18779 0.90245 0.85777 0.95244 1.85977 1.36461 1.12501 1.87994 1.22501 0.93545 0.80833 1.02606 1.21388 0.98955 0.92228 1.04201 1.19724 0.88124 0.84287 0.84154 1.90520 1.14238 1.86884 1.56309 1.43534 1.05740 1.04468 1.62280 1.21520 0.80941 1.00245 1.00732 1.19604 0.99739 0.85161 1.39178 0.88436 1.25366 0.96752 1.00073 0.95031 1.69985 1.20373 1.28726 1.32913 0.85977 0.79279 0.80605 0.78717 1.19875 1.20905 1.19745 1.21249 0.93113 0.99234 1.09330 0.91053 0.91587 0.91332 0.86327 0.91127 0.91582 0.91189 0.91626 0.91088 0.91851 0.91319 0.91405 0.89526 0.89272 0.92850 0.90634 0.95369 0.92116 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.05 -0.63 5.88 -104.64 -0.62 -1.24 16 3 C -0.16 -1.87 9.35 -39.56 -0.37 -2.24 16 4 C -0.05 -0.61 5.88 -104.64 -0.62 -1.22 16 5 C -0.11 -0.93 9.19 36.01 0.33 -0.60 16 6 C -0.13 -1.73 5.89 -104.47 -0.62 -2.35 16 7 C -0.10 -1.16 8.97 36.01 0.32 -0.84 16 8 C 0.15 2.23 6.66 -39.22 -0.26 1.97 16 9 O -0.32 -5.17 9.18 -19.42 -0.18 -5.35 16 10 C 0.08 1.40 4.03 37.16 0.15 1.55 16 11 C -0.13 -2.37 4.68 -27.88 -0.13 -2.50 16 12 C 0.45 10.90 7.63 -10.99 -0.08 10.82 16 13 O -0.59 -16.24 15.70 5.54 0.09 -16.16 16 14 N -0.44 -11.35 3.01 -122.19 -0.37 -11.72 16 15 C 0.11 2.43 8.44 59.85 0.51 2.93 16 16 C -0.31 -8.63 9.24 -14.94 -0.14 -8.76 16 17 H 0.10 2.83 7.45 -52.49 -0.39 2.44 16 18 C 0.03 0.83 5.04 -17.47 -0.09 0.74 16 19 N -0.88 -23.47 10.84 55.50 0.60 -22.87 16 20 Si 0.93 20.70 29.57 -169.99 -5.03 15.67 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.21 -3.08 8.69 -39.43 -0.34 -3.43 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 34 H 0.06 0.57 6.70 -51.93 -0.35 0.23 16 35 H 0.07 1.25 7.62 -51.93 -0.40 0.85 16 36 H 0.07 1.20 7.62 -51.93 -0.40 0.81 16 37 H 0.09 1.46 7.41 -51.93 -0.38 1.08 16 38 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 39 H 0.05 1.21 7.83 -51.93 -0.41 0.80 16 40 H 0.07 1.77 6.80 -51.93 -0.35 1.41 16 41 H 0.03 0.51 6.61 -51.93 -0.34 0.17 16 42 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.13 1.97 6.30 -52.49 -0.33 1.64 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -31.05 350.92 -7.78 -38.83 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.59 Total: 2.27 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.59 Total: -5.97 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.23 Total: -34.58 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.09 Total: -21.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.05 -7.78 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337252141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.028 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds