Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38284 * 119.96903 * 2 1 4 4 C 1.38249 * 120.10621 * 180.29439 * 3 2 1 5 5 C 1.50704 * 119.96980 * 179.73058 * 4 3 2 6 6 C 1.38162 * 120.05539 * 359.45804 * 4 3 2 7 7 C 1.50704 * 120.02440 * 180.29625 * 6 4 3 8 8 C 1.38707 * 119.94769 * 0.26733 * 6 4 3 9 9 O 1.35898 * 120.05653 * 179.97438 * 8 6 4 10 10 C 1.42900 * 116.99844 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47207 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47299 * 180.02562 * 11 10 9 13 13 O 1.21295 * 120.00278 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00335 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99554 * 359.97438 * 14 12 11 16 16 C 1.37088 * 120.00106 * 180.02562 * 14 12 11 17 17 H 1.08002 * 120.00674 * 24.39378 * 16 14 12 18 18 C 1.38952 * 119.99852 * 204.39128 * 16 14 12 19 19 N 1.31415 * 120.00264 * 12.64255 * 18 16 14 20 20 Si 1.86805 * 120.00206 * 192.64164 * 18 16 14 21 21 H 1.48497 * 109.46769 * 60.00016 * 20 18 16 22 22 H 1.48494 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47067 * 300.00182 * 20 18 16 24 24 C 1.38126 * 119.97160 * 179.75408 * 2 1 3 25 25 H 1.09005 * 109.47001 * 270.24738 * 1 2 3 26 26 H 1.09000 * 109.47217 * 30.24824 * 1 2 3 27 27 H 1.09003 * 109.46893 * 150.24698 * 1 2 3 28 28 H 1.07993 * 119.94858 * 0.05058 * 3 2 1 29 29 H 1.09007 * 109.46651 * 269.72858 * 5 4 3 30 30 H 1.08999 * 109.47244 * 29.72746 * 5 4 3 31 31 H 1.09004 * 109.47263 * 149.72928 * 5 4 3 32 32 H 1.08996 * 109.47371 * 90.00068 * 7 6 4 33 33 H 1.09006 * 109.47054 * 209.99728 * 7 6 4 34 34 H 1.09001 * 109.47529 * 329.99477 * 7 6 4 35 35 H 1.08995 * 109.47568 * 300.00553 * 10 9 8 36 36 H 1.09003 * 109.47009 * 60.00831 * 10 9 8 37 37 H 1.08995 * 109.47290 * 300.00702 * 11 10 9 38 38 H 1.09003 * 109.46475 * 60.00482 * 11 10 9 39 39 H 1.09003 * 109.47003 * 85.86930 * 15 14 12 40 40 H 1.08998 * 109.47068 * 205.86864 * 15 14 12 41 41 H 1.08998 * 109.47243 * 325.86434 * 15 14 12 42 42 H 0.96998 * 120.00251 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.02719 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0061 5 6 4.3300 2.5086 -0.0123 6 6 4.2751 0.0071 -0.0010 7 6 5.7822 0.0116 -0.0009 8 6 3.5846 -1.1958 0.0047 9 8 4.2658 -2.3717 0.0093 10 6 3.4893 -3.5713 0.0145 11 6 4.4231 -4.7833 0.0198 12 6 3.6042 -6.0484 0.0246 13 8 2.3928 -5.9867 0.0245 14 7 4.2178 -7.2484 0.0303 15 6 5.6810 -7.3229 0.0310 16 6 3.4728 -8.3992 0.0342 17 1 2.4647 -8.3913 -0.3533 18 6 4.0148 -9.5759 0.5365 19 7 5.1313 -9.5421 1.2288 20 14 3.1562 -11.2060 0.2280 21 1 3.0653 -11.4485 -1.2342 22 1 3.9311 -12.3017 0.8637 23 1 1.7901 -11.1637 0.8086 24 6 2.1971 -1.1965 0.0051 25 1 -0.3633 0.0044 1.0277 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8922 -0.5100 28 1 1.6565 2.1324 0.0008 29 1 4.5103 2.8191 -1.0415 30 1 3.7388 3.2688 0.4983 31 1 5.2830 2.3834 0.5018 32 1 6.1455 0.0171 1.0267 33 1 6.1482 -0.8796 -0.5109 34 1 6.1430 0.9004 -0.5187 35 1 2.8608 -3.5935 0.9047 36 1 2.8603 -3.6008 -0.8752 37 1 5.0519 -4.7614 -0.8702 38 1 5.0518 -4.7536 0.9097 39 1 6.0472 -7.2628 1.0559 40 1 5.9969 -8.2668 -0.4130 41 1 6.0873 -6.4945 -0.5492 42 1 5.5098 -10.3636 1.5792 43 1 1.6571 -2.1318 0.0096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337252141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = -78.626163 kcal Electronic energy + Delta-G solvation = -22761.498698 eV Core-core repulsion = 19384.933251 eV Total energy + Delta-G solvation = -3376.565447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41771 -40.43998 -38.84714 -36.75565 -35.25920 -33.88376 -33.10462 -31.58835 -30.12020 -28.31035 -28.00199 -26.86997 -25.74932 -24.66983 -22.56048 -21.26702 -20.39928 -18.97740 -18.61864 -17.61305 -17.42662 -17.28525 -16.54328 -16.31092 -16.04649 -15.88316 -15.07751 -14.86631 -14.51897 -14.22175 -14.19323 -14.03085 -13.77292 -13.68875 -13.54908 -13.38409 -13.19438 -13.16863 -12.87571 -12.76393 -12.65943 -12.54709 -12.34027 -12.18777 -12.15836 -12.10953 -11.62085 -11.51993 -11.03042 -10.48086 -9.72153 -9.45163 -9.01332 -8.37790 -6.03709 0.32927 0.47598 1.37439 1.39899 1.50458 1.92832 1.98653 2.30803 2.71354 3.05069 3.16626 3.71140 3.81973 3.88933 3.91892 4.05952 4.10109 4.21818 4.27418 4.41327 4.45346 4.61968 4.66054 4.71838 4.76170 4.77292 4.80504 4.82691 4.86998 4.89834 4.94366 5.01237 5.11486 5.21030 5.34104 5.40752 5.41544 5.46311 5.59795 5.68451 5.92443 6.05530 6.40366 6.43712 7.10766 7.40073 7.94862 8.65293 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.002977 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.916973 B = 9401.648858 C =10256.799521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.059 4.059 3 C -0.160 4.160 4 C -0.052 4.052 5 C -0.112 4.112 6 C -0.142 4.142 7 C -0.101 4.101 8 C 0.113 3.887 9 O -0.319 6.319 10 C 0.095 3.905 11 C -0.113 4.113 12 C 0.440 3.560 13 O -0.634 6.634 14 N -0.458 5.458 15 C 0.117 3.883 16 C -0.349 4.349 17 H 0.072 0.928 18 C -0.001 4.001 19 N -0.894 5.894 20 Si 0.991 3.009 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.277 1.277 24 C -0.233 4.233 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.275 0.725 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 21.498 -2.538 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.178 4.178 4 C -0.053 4.053 5 C -0.168 4.168 6 C -0.143 4.143 7 C -0.158 4.158 8 C 0.068 3.932 9 O -0.233 6.233 10 C 0.019 3.981 11 C -0.153 4.153 12 C 0.230 3.770 13 O -0.523 6.523 14 N -0.176 5.176 15 C -0.026 4.026 16 C -0.477 4.477 17 H 0.090 0.910 18 C -0.203 4.203 19 N -0.533 5.533 20 Si 0.814 3.186 21 H -0.191 1.191 22 H -0.193 1.193 23 H -0.202 1.202 24 C -0.252 4.252 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.166 0.834 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.273 21.310 -2.438 21.487 hybrid contribution -0.728 -1.574 0.100 1.737 sum 0.545 19.736 -2.338 19.881 Atomic orbital electron populations 1.20853 0.89497 1.03542 1.03146 1.20002 0.97303 0.92183 0.96447 1.21112 0.93627 0.97903 1.05191 1.19978 0.93855 0.94964 0.96453 1.20888 1.00343 0.92027 1.03531 1.19416 0.97572 0.89669 1.07621 1.20633 0.89377 1.03179 1.02602 1.19136 0.90788 0.85883 0.97384 1.85923 1.36181 1.12465 1.88689 1.22156 0.93033 0.81441 1.01473 1.21232 0.98431 0.89581 1.06013 1.20610 0.88158 0.85605 0.82663 1.90484 1.16345 1.87709 1.57746 1.43810 1.07023 1.04429 1.62378 1.21504 0.79081 1.01157 1.00820 1.19595 0.99653 0.87092 1.41323 0.90995 1.26128 0.97381 1.02699 0.94141 1.70052 1.20889 1.29842 1.32476 0.85041 0.77973 0.76655 0.78940 1.19082 1.19323 1.20232 1.21296 0.93251 0.99647 1.10999 0.90266 0.89327 0.92066 0.83404 0.89730 0.89862 0.90368 0.91070 0.92333 0.89420 0.92845 0.92414 0.87021 0.87737 0.93626 0.92182 0.91212 0.91532 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 2 C -0.06 -1.46 5.88 -19.88 -0.12 -1.57 16 3 C -0.16 -3.33 9.35 22.28 0.21 -3.12 16 4 C -0.05 -1.10 5.88 -19.88 -0.12 -1.21 16 5 C -0.11 -1.43 9.19 71.24 0.65 -0.77 16 6 C -0.14 -3.64 5.89 -19.77 -0.12 -3.75 16 7 C -0.10 -2.10 8.97 71.24 0.64 -1.46 16 8 C 0.11 3.52 6.66 22.50 0.15 3.67 16 9 O -0.32 -10.59 9.18 -92.41 -0.85 -11.44 16 10 C 0.09 3.42 4.03 71.98 0.29 3.71 16 11 C -0.11 -4.19 4.68 29.85 0.14 -4.05 16 12 C 0.44 21.89 7.63 87.65 0.67 22.56 16 13 O -0.63 -36.31 15.70 -3.08 -0.05 -36.36 16 14 N -0.46 -23.98 3.01 -658.88 -1.98 -25.97 16 15 C 0.12 5.16 8.44 127.77 1.08 6.24 16 16 C -0.35 -20.05 9.24 84.04 0.78 -19.28 16 17 H 0.07 4.40 7.45 -2.91 -0.02 4.38 16 18 C 0.00 -0.07 5.04 84.93 0.43 0.36 16 19 N -0.89 -47.58 10.84 21.66 0.23 -47.34 16 20 Si 0.99 42.55 29.57 68.60 2.03 44.58 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C -0.23 -7.07 8.69 22.37 0.19 -6.87 16 25 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.09 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 28 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.08 0.90 6.70 -2.39 -0.02 0.88 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.35 7.53 -2.38 -0.02 1.33 16 34 H 0.09 1.35 6.70 -2.39 -0.02 1.33 16 35 H 0.05 2.06 7.62 -2.39 -0.02 2.04 16 36 H 0.06 2.17 7.62 -2.39 -0.02 2.15 16 37 H 0.11 3.60 7.41 -2.39 -0.02 3.58 16 38 H 0.10 3.59 8.11 -2.39 -0.02 3.57 16 39 H 0.05 2.05 7.83 -2.39 -0.02 2.03 16 40 H 0.06 2.80 6.80 -2.39 -0.02 2.78 16 41 H 0.07 2.44 6.61 -2.39 -0.02 2.42 16 42 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 43 H 0.12 3.75 6.30 -2.91 -0.02 3.74 16 Total: -1.00 -69.20 350.92 5.97 -63.23 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.00 Total: 20.30 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 5.59 Total: -7.00 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.75 Total: -73.31 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.90 Total: -47.80 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.20 5.97 -63.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337252141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.392 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds